Publications

Number
Publication
1Diosady, L. L.; Sleggs, P.; Kaji, T., Chemical degumming of canola oils. J. Am. Oil Chem. Soc. 1982, 59 (7), 313-316. https://doi.org/10.1007/BF02662234
2Kulakova, S. M.; Yakunin, A. F.; Gogotov, I. N., Resistance of hydrogenase and nitrogenase of purple bacteria to oxygen and products of its reduction. Prikladnaya Biokhimiya i Mikrobiologiya 1982, 18 (3), 324-330.

3Tsygankov, A. A.; Yakunin, A. F.; Gogotov, I. N., Hydrogenase activity of Rhodopseudomonas capsulata growing in organic media. Mikrobiologiya 1982, 51 (4), 533-537.

4Diosady, L. L.; Rubin, L. J.; Ting, N.; Trass, O., Rapid extraction of canola oil. J. Am. Oil Chem. Soc. 1983, 60 (9), 1658-1661. https://doi.org/10.1007/BF02662427
5Sefton, M. V.; Horvath, V.; Allen, D. G.; Zingg, W., Insulin delivery from an implanted controlled release micropump in pancreatectomized dogs. Trans. Am. Soc. Artif. Intern. Organs 1983, 29 (1), 714-718.

6Tsygankov, A. A.; Yakunin, A. F.; Gogotov, I. N., The effect of pO2 on the growth and hydrogenase and nitrogenase activities of Rhodopseudomonas capsulata and Azotobacter vinelandii cells. Mikrobiologiya 1983, 52 (4), 543-547.

7Yakunin, A. F.; Gogotov, I. N., Properties and regulation of synthesis of two ferredoxins from Rhodopseudomonas capsulata. BBA - Bioenergetics 1983, 725 (2), 298-308. https://doi.org/10.1016/0005-2728(83)90203-7
8Davidson, V. J.; Paton, D.; Diosady, L. L.; Larocque, G., Degradation of wheat starch in a single screw extruder: Characteristics of extruded starch polymers. J. Food Sci. 1984, 49 (2), 453-458. https://doi.org/10.1111/j.1365-2621.1984.tb12441.x
9Davidson, V. J.; Paton, D.; Diosady, L. L.; Rubin, L. J., A model for mechanical degradation of wheat starch in a single‐screw extruder. J. Food Sci. 1984, 49 (4), 1154-1157. https://doi.org/10.1111/j.1365-2621.1984.tb10416.x
10Diosady, L. L.; Sleggs, P. W.; Kaji, T., Scale-up of canola oil degumming. J. Am. Oil Chem. Soc. 1984, 61 (8), 1366-1369. https://doi.org/10.1007/BF02542244
11Shahidi, F.; Naczk, M.; Rubin, L. J.; Diosady, L. L., Functional properties of blood globin. J. Food Sci. 1984, 49 (2), 370-372. https://doi.org/10.1111/j.1365-2621.1984.tb12424.x
12Yakunin, A. F.; Gogotov, I. N., The activity of two forms of nitrogenase from Rhodopseudomonas capsulata in the presence of different electron donors. FEMS Microbiol. Lett. 1984, 23 (2-3), 217-220.

13Bello, C.; Diosady, L. L.; Graydon, W. F.; Rubin, L. J., Homogeneous catalytic hydrogenation of canola oil using a ruthenium catalyst. Journal of the American Oil Chemists’ Society 1985, 62 (11), 1587-1592. https://doi.org/10.1007/BF02541693
14Caceres, L.; Diosady, L. L.; Graydon, W. F.; Rubin, L. J., Supported gold catalysis in the hydrogenation of canola oil. J. Am. Oil Chem. Soc. 1985, 62 (5), 906-910. https://doi.org/10.1007/BF02541755
15Diosady, L. L.; Naczk, M.; Rubin, L. J., The effect of ammonia concentration on the properties of canola meals produced by the ammonia-methanol/hexane extraction system. Food Chem. 1985, 18 (2), 121-130. https://doi.org/10.1016/0308-8146(85)90135-9
16Diosady, L. L.; Paton, D.; Rosen, N.; Rubin, L. J.; Athanassoulias, C., Degradation of wheat starch in a single‐screw extruder: Mechano‐kinetic breakdown of cooked starch. J. Food Sci. 1985, 50 (6), 1697-1699. https://doi.org/10.1111/j.1365-2621.1985.tb10568.x
17Naczk, M.; Diosady, L. L.; Rubin, L. J., Functional properties of canola meals produced by a two‐phase solvent extraction system. J. Food Sci. 1985, 50 (6), 1685-1688. https://doi.org/10.1111/j.1365-2621.1985.tb10565.x
18Shahidi, F.; Rubin, L. J.; Diosady, L. L.; Wood, D. F., Effect of sulfanilamide on the TBA values of cured meats. J. Food Sci. 1985, 50 (1), 274-275. https://doi.org/10.1111/j.1365-2621.1985.tb13332.x
19Shahidi, F.; Rubin, L. J.; Diosady, L. L.; Wood, D. F., Preparation of the cooked cured‐meat pigment, dinitrosyl ferrohemochrome, from gemin and nitric oxide. J. Food Sci. 1985, 50 (1), 272-273. https://doi.org/10.1111/j.1365-2621.1985.tb13331.x
20Yakunin, A. F.; Tsygankov, A. A.; Gogotov, I. N., Ratio of two forms of nitrogenase and the effect of its turnoff in cells of Rhodopseudomonas capsulata grown under conditions of ammonium limitation. Dokl. Biochem. 1985, 281 (1-6), 79-82.

21Allen, D. G.; Sefton, M. V., A model of insulin delivery by a controlled release micropump. Ann. Biomed. Eng. 1986, 14 (3), 257-276. https://doi.org/10.1007/BF00000004
22Diosady, L. L.; Rubin, L. J.; Tar, C. G.; Etkin, B., Air classification of rapeseed meal using the tervel separator. Can. J. Chem. Eng. 1986, 64 (5), 768-774. https://doi.org/10.1002/cjce.5450640508
23Hsu, N.; Diosady, L. L.; Graydon, W. F.; Rubin, L. J., Heterogeneous catalytic hydrogenation of canola oil using palladium. J. Am. Oil Chem. Soc. 1986, 63 (8), 1036-1042. https://doi.org/10.1007/BF02673794
24Naczk, M.; Diosady, L. L.; Rubin, L. J., The phytate and complex phenol content of meals produced by alkanol-ammonia/hexane extraction of canola. LWT - Food Science and Technology 1986, 19 (1), 13-16.

25Rubin, L. J.; Köseoglu, S. S.; Diosady, L. L.; Graydon, W. F., Hydrogenation of canola oil in the presence of nickel and the methyl benzoate-chrome carbonyl complex. J. Am. Oil Chem. Soc. 1986, 63 (12), 1551-1557. https://doi.org/10.1007/BF02553083
26Saville, B. A.; Gray, M. R.; Tam, Y. K., The metabolism of lidocaine in the liver: Steady‐state and dynamic modelling. Can. J. Chem. Eng. 1986, 64 (4), 617-624. https://doi.org/10.1002/cjce.5450640412
27Shahidi, F.; Rubin, L. J.; Diosady, L. L.; Kassam, N.; Fong, J. C. L. S.; Wood, D. F., Effect of sequestering agents on lipid oxidation in cooked meats. Food Chem. 1986, 21 (2), 145-152. https://doi.org/10.1016/0308-8146(86)90159-7
28Allen, D. G.; Robinson, C. W., The influence of "slip" on rheological measurements on a mycelial broth of Aspergillus niger. Ann. N. Y. Acad. Sci. 1987, 506, 589-99. https://doi.org/10.1111/j.1749-6632.1987.tb23853.x
29Gray, M. R.; Saville, B. A.; Tam, Y. K., Mechanisms of lidocaine kinetics in the isolated perfused rat liver. III. Evaluation of liver models for time-dependent behavior. Drug Metab. Disposition 1987, 15 (1), 22-26.

30Moo‐Young, M.; Halard, B.; Allen, D. G.; Burrell, R.; Kawase, Y., Oxygen transfer to mycelial fermentation broths in an airlift fermentor. Biotechnology and Bioengineering 1987, 30 (6), 746-753. https://doi.org/10.1002/bit.260300607
31Saville, B. A.; Gray, M. R.; Tam, Y. K., Mechanisms of lidocaine kinetics in the isolated perfused rat liver. II. Kinetics of steady state elimination. Drug Metab. Disposition 1987, 15 (1), 17-21.

32Tzeng, Y. M.; Diosady, L. L.; Rubin, L. J., Preparation of rapeseed protein isolate by sodium hexametaphosphate extraction, ultrafiltration, diafiltration, and ion‐exchange. J. Food Sci. 1988, 53 (5), 1537-1541. https://doi.org/10.1111/j.1365-2621.1988.tb09318.x
33Yakunin, A. F.; Gogotov, I. N., Formation of two forms of nitrogenase and effects of its switch-off by ammonia in purple bacteria. Microbiol. Sci. 1988, 5 (3), 78-81.

34Allen, D. G.; Robinson, C. W., Hydrodynamics and mass transfer in Aspergillus niger fermentations in bubble column and loop bioreactors. Biotechnology and Bioengineering 1989, 34 (6), 731-740. https://doi.org/10.1002/bit.260340602
35Bernstein, P. A.; Graydon, W. F.; Diosady, L. L., Hydrogenation of canola oil using chromium catalysts. J. Am. Oil Chem. Soc. 1989, 66 (5), 680-684. https://doi.org/10.1007/BF02669951
36Ch'ang, W. N.; Yakunin, A. F.; Gogotov, I. N., The ability of the free-living cyanobacterium Anabaena azollae to synthesize alternative nitrogenases. Dokl. Biochem. 1989, 309 (1-6), 361-363.

37Diosady, L. L.; Tar, C. G.; Rubin, L. J.; Sidaway-Wolf, D., Use of liquid cyclones in extraction of oil from ground canola seed. Transactions of the American Society of Agricultural Engineers 1989, 32 (5), 1754-1758.

38Hsu, N.; Diosady, L. L.; Rubin, L. J., Catalytic behavior of palladium in the hydrogenation of edible oils II. Geometrical and positional isomerization characteristics. J. Am. Oil Chem. Soc. 1989, 66 (2), 232-236. https://doi.org/10.1007/BF02546066
39Saville, B. A.; Gray, M. R.; Tam, Y. K., Evidence for lidocaine‐lnduced enzyme inactivation. J. Pharm. Sci. 1989, 78 (12), 1003-1008. https://doi.org/10.1002/jps.2600781207
40Tar, C. G.; Diosady, L. L.; Rubin, L. J.; Sidaway-Wolf, D. M., Simultaneous grinding and extraction of canola in the Szego mill using methanol/ammonia/water and hexane. Transactions of the American Society of Agricultural Engineers 1989, 32 (2), 751-755.

41Yakunin, A. F.; Ch'ang Wang, N.; Gogotov, I. N., Formation of alternative nitrogenases of the heterocystic cyanobacterium Anabaena variabilis. Dokl. Biochem. 1989, 307 (1-6), 239-240.

42Carbohydrate PolymersChan Van, N.; Yakunin, A. F.; Gogotov, I. N., The effect of molybdenum, vanadium and tungsten on the growth of a free-living Anabaena azollae cyanobacterium and on its synthesis of nitrogenase. Mikrobiologiya 1990, 59 (4), 583-586.

43Chan Van, N.; Yakunin, A. F.; Gogotov, I. N., The effect of bound nitrogen forms on the growth and synthesis of different nitrogenases in Anabaena variabilis. Mikrobiologiya 1990, 59 (3), 394-398.

44Tzeng, Y. M.; Diosady, L. L.; Rubin, L. J., Production of canola protein materials by alkaline extraction, precipitation, and membrane processing. J. Food Sci. 1990, 55 (4), 1147-1151. https://doi.org/10.1111/j.1365-2621.1990.tb01619.x
45Yakunin, A. F.; Chan, K.; Gogotov, I. N., The effect of molybdenum on the growth, nitrogenase and nitrate reductase activities of the heterocystic cyanobacterium Anabaena sphaerica. Mikrobiologiya 1990, 59 (6), 956-961.

46Yakunin, A. F.; Chan, K.; Gogotov, I. N., The growth, nitrogenase and nitrate reductase activities of Anabaena sphaerica at a deficiency of certain ions in the medium. Mikrobiologiya 1990, 59 (5), 771-776.

47Yakunin, A. F.; Chan, K.; Laurinavichene, T. V.; Gogotov, I. N., Purification and properties of two ferredoxins from the nitrogen-fixing heterocystous cyanobacterium Anabaena sphaerica. Biokhimiya 1990, 55 (1), 80-86.

48Allen, D. G.; Robinson, C. W., Comments on the communication: On the calculation of shear rate and apparent viscosity in airlift and bubble column bioreactors. Biotechnology and Bioengineering 1991, 38 (2), 212-216. https://doi.org/10.1002/bit.260380214
49Allen, D. G.; Robinson, C. W., The prediction of transport parameters in filamentous fermentation broths based on results obtained in pseudoplastic polymer solutions. The Canadian Journal of Chemical Engineering 1991, 69 (2), 498-505. https://doi.org/10.1002/cjce.5450690214
50Ramarathnam, N.; Rubin, L. J.; Diosady, L. L., Studies on meat flavor. 1. Qualitative and quantitative differences in uncured and cured pork. Journal of Agricultural and Food Chemistry 1991, 39 (2), 344-350.

51Ramarathnam, N.; Rubin, L. J.; Diosady, L. L., Studies on meat flavor. 2. A quantitative investigation of the volatile carbonyls and hydrocarbons in uncured and cured beef and chicken. Journal of Agricultural and Food Chemistry 1991, 39 (10), 1839-1847.

52Tomar, P.; Allen, D. G., Removal of organochlorines from kraft pulp mill effluent by an aerated logoon. Water pollution research journal of Canada 1991, 26 (1), 101-117.

53Ackerman, J. D.; Ethier, C. R.; Allen, D. G.; Spelt, J. K., Investigation of zebra mussel adhesion strength using rotating disks. Journal of Environmental Engineering (United States) 1992, 118 (5), 708-724. https://doi.org/10.1061/(ASCE)0733-9372(1992)118:5(708)
54Cherysh, A.; Liss, S. N.; Allen, D. G., Batch study of the aerobic and anaerobic removal of chlorinated organic compounds in an aerated lagoon. Water pollution research journal of Canada 1992, 27 (3), 621-638.

55Edwards, E. A.; Grbic-Galic, D., Complete mineralization of benzene by aquifer microorganisms under strictly anaerobic conditions. Applied and Environmental Microbiology 1992, 58 (8), 2663-2666. https://doi.org/10.1128/aem.58.8.2663-2666.1992
56Edwards, E. A.; Wills, L. E.; Reinhard, M.; Grbic-Galic, D., Anaerobic degradation of toluene and xylene by aquifer microorganisms under sulfate-reducing conditions. Applied and Environmental Microbiology 1992, 58 (3), 794-800. https://doi.org/10.1128/aem.58.3.794-800.1992
57Leong‐Poi, L.; Allen, D. G., Direct measurement of the yield stress of filamentous fermentation broths with the rotating vane technique. Biotechnology and Bioengineering 1992, 40 (3), 403-412. https://doi.org/10.1002/bit.260400310
58O'Boyle, A. R.; Aladin‐Kassam, N.; Rubin, L. J.; Diosady, L. L., Encapsulated cured‐meat pigment and its application in nitrite‐free ham. J. Food Sci. 1992, 57 (4), 807-812. https://doi.org/10.1111/j.1365-2621.1992.tb14299.x
59Saville, B. A.; Gray, M. R.; Tam, Y. K., Experimental studies of transient mass transfer and reaction in the liver: Interpretation with a heterogeneous compartment model. J. Pharm. Sci. 1992, 81 (3), 265-271. https://doi.org/10.1002/jps.2600810316
60Saville, B. A.; Gray, M. R.; Tam, Y. K., Models of hepatic drug elimination. Drug Metab. Rev. 1992, 24 (1), 49-88.

61Saville, B. A.; Persi, S., The effect of oxygen upon the kinetics of enzyme inactivation: In vitro investigations using glutamine synthetase. Can. J. Chem. Eng. 1992, 70 (6), 1143-1148. https://doi.org/10.1002/cjce.5450700614
62Adu-Peasah, S. P.; Diosady, L. L.; Rubin, L. J., A multistage hydrocyclone/stirred-tank system for countercurrent extraction of canola oil. Journal of the American Oil Chemists’ Society 1993, 70 (8), 755-762. https://doi.org/10.1007/BF02542596
63Cai, W.; Diosady, L. L., Model for gelatinization of wheat starch in a twin‐screw extruder. J. Food Sci. 1993, 58 (4), 872-875. https://doi.org/10.1111/j.1365-2621.1993.tb09380.x
64Friedrich, S. W.; Cheng, Y. L.; Saville, B. A., Theoretical corneal permeation model for ionizable drugs. J. Ocul. Pharmacol. 1993, 9 (3), 229-249.

65Fulthorpe, R. R.; Liss, S. N.; Allen, D. G., Characterization of bacteria isolated from a bleached kraft pulp mill wastewater treatment system. Can. J. Microbiol. 1993, 39 (1), 13-24.

66Ramarathnam, N.; Rubin, L. J.; Diosady, L. L., Studies on meat flavor. 3. A novel method for trapping volatile components from uncured and cured pork. Journal of Agricultural and Food Chemistry 1993, 41 (6), 933-938.

67Ramarathnam, N.; Rubin, L. J.; Diosady, L. L., Studies on meat flavor. 4. Fractionation, characterization, and quantitation of volatiles from uncured and cured beef and chicken. Journal of Agricultural and Food Chemistry 1993, 41 (6), 939-945.

68Tamagnini, P.; Yakunin, A. F.; Gogotov, I. N.; Lindblad, P., Plant-type and bacterial-type ferredoxins in a nitrogen-fixing cyanobacterium: Nostoc sp. strain PCC 73102. FEMS Microbiol. Lett. 1993, 107 (1), 37-42.

69Yakunin, A. F.; Gennaro, G.; Hallenbeck, P. C., Purification and properties of a nif-specific flavodoxin from the photosynthetic bacterium Rhodobacter capsulatus. J. Bacteriol. 1993, 175 (21), 6775-6780.

70Yakunin, A. F.; Hallenbeck, P. C.; Troshina, O. Y.; Gogotov, I. N., Purification and properties of a bacterial-type ferredoxin from the nitrogen-fixing cyanobacterium Anabaena variabilis ATCC29413. Biochim. Biophys. Acta 1993, 1163 (2), 124-130. https://doi.org/10.1016/0167-4838(93)90173-O
71Yakunin, A. F.; Hallenbeck, P. C.; Troshina, O. Y.; Gogotov, I. N., Purification and properties of a flavodoxin from the heterocystous cyanobacterium Anabaena sphaerica. Biochim. Biophys. Acta 1993, 1164 (3), 305-310. https://doi.org/10.1016/0167-4838(93)90263-Q
72Ackerman, J. D.; Wong, L.; Ethier, C. R.; Allen, D. G.; Spelt, J. K., Preston-static tubes for the measurement of wall shear stress. Journal of Fluids Engineering, Transactions of the ASME 1994, 116 (3), 645-649.

73Chiu, R.; Saville, B. A., Effect of oxygen upon the kinetics of tyrosinase inactivation. Food and Bioproducts Processing: Transactions of the Institution of of Chemical Engineers, Part C 1994, 72 (1), 41-46.

74Edwards, E. A.; Edwards, A. M.; Grbic-Galic, D., A method for detection of aromatic metabolites at very low concentrations: Application to detection of metabolites of anaerobic toluene degradation. Applied and Environmental Microbiology 1994, 60 (1), 323-327. https://doi.org/10.1128/aem.60.1.323-327.1994
75Edwards, E. A.; Grbic-Galic, D., Anaerobic degradation of toluene and o-xylene by a methanogenic consortium. Applied and Environmental Microbiology 1994, 60 (1), 313-322. https://doi.org/10.1128/aem.60.1.313-322.1994
76Fulthorpe, R. R.; Allen, D. G., Evaluation of Biolog MT plates for aromatic and chloroaromatic substrate utilization tests. Can. J. Microbiol. 1994, 40 (12), 1067-1071.

77Kautola, H. K.; Allen, D. G., Surface tension measurements on filamentous broths. Biotechnol. Tech. 1994, 8 (2), 83-86. https://doi.org/10.1007/BF00152845
78Oh, C.; Apel, A. J. G.; Saville, B. A.; Cheng, Y. L.; Rootman, D. S., Local efficacy of cyclosporine in corneal transplant therapy. Curr. Eye Res. 1994, 13 (5), 337-343. https://doi.org/10.3109/02713689409167297
79Varga, T. K.; Diosady, L. L., Simultaneous extraction of oil and antinutritional compounds from flaxseed. J. Am. Oil Chem. Soc. 1994, 71 (6), 603-607. https://doi.org/10.1007/BF02540586
80Xu, L.; Diosady, L. L., Functional properties of Chinese rapeseed protein isolates. J. Food Sci. 1994, 59 (5), 1127-1130. https://doi.org/10.1111/j.1365-2621.1994.tb08207.x
81Xu, L.; Diosady, L. L., The production of Chinese rapeseed protein isolates by membrane processing. J. Am. Oil Chem. Soc. 1994, 71 (9), 935-939. https://doi.org/10.1007/BF02542257
82Yan, G.; Allen, D. G., Biosorption of high molecular weight organochlorines in pulp mill effluent. Water Res. 1994, 28 (9), 1933-1941. https://doi.org/10.1016/0043-1354(94)90168-6
83Ackerman, J. D.; Cottrell, C. M.; Ethier, C. R.; Allen, D. G.; Spelt, J. K., A wall jet to measure the attachment strength of zebra mussels. Can. J. Fish. Aquat. Sci. 1995, 52 (1), 126-135. https://doi.org/10.1139/f95-012
84Apel, A.; Oh, C.; Chiu, R.; Saville, B.; Cheng, Y. L.; Rootman, D., A subconjunctival degradable implant for cyclosporine delivery in corneal transplant therapy. Curr. Eye Res. 1995, 14 (8), 659-667. https://doi.org/10.3109/02713689508998493
85Cai, W.; Diosady, L. L.; Rubin, L. J., Degradation of wheat starch in a twin-screw extruder. J. Food Eng. 1995, 26 (3), 289-300. https://doi.org/10.1016/0260-8774(94)00056-F
86Fichtali, J.; van de Voort, F. R.; Diosady, L. L., Performance evaluation of acid casein neutralization process by twin-screw extrusion. J. Food Eng. 1995, 26 (3), 301-318. https://doi.org/10.1016/0260-8774(94)00058-H
87Fulthorpe, R. R.; Allen, D. G., A comparison of organochlorine removal from bleached kraft pulp and paper-mill effluents by dehalogenating Pseudomonas, Ancylobacter and Methylobacterium strains. Applied Microbiology and Biotechnology 1995, 42 (5), 782-789. https://doi.org/10.1007/BF00171962
88Kamilakis, E. G.; Allen, D. G., Cultivating filamentous microorganisms in a cyclone bioreactor: The influence of pumping on cell morphology. Process Biochem. 1995, 30 (4), 353-360. https://doi.org/10.1016/0032-9592(95)87044-X
89Liu, J.; Shi, M.; Diosady, L. L.; Rubin, L. J., Three-phase extraction of Chinese rapeseed using the Karr column. J. Food Eng. 1995, 24 (1), 35-45. https://doi.org/10.1016/0260-8774(94)P1606-X
90Mohseni, M.; Allen, D. G., The effect of particle morphology and concentration on the directly measured yield stress in filamentous suspensions. Biotechnology and Bioengineering 1995, 48 (3), 257-265. https://doi.org/10.1002/bit.260480312
91Oh, C.; Saville, B. A.; Cheng, Y. L.; Rootman, D. S., A compartmental model for the occular pharmacokinetics of cyclosporine in rabbits. Pharmaceutical Research: An Official Journal of the American Association of Pharmaceutical Scientists 1995, 12 (3), 433-437. https://doi.org/10.1023/A:1016268922035
92Pasko, A.; Adzhiev, V.; Sourin, A.; Savchenko, V., Function representation in geometric modeling: concepts, implementation and applications. The Visual Computer 1995, 11 (8), 429-446. https://doi.org/10.1007/BF02464333
93Ackerman, J. D.; Cottrell, C. M.; Ethier, C. R.; Allen, D. G.; Spelt, J. K., Attachment strength of zebra mussels on natural, polymeric, and metallic materials. J. Environ. Eng. 1996, 122 (2), 141-148.

94Diosady, L. L.; Rizvi, S. S. H.; Cai, W.; Jagdeo, D. J., Moisture sorption isotherms of canola meals, and applications to packaging. J. Food Sci. 1996, 61 (1), 204-208.

95Friedrich, S. W.; Saville, B. A.; Cheng, Y. L., Finite element modelling of drug distribution in the vitreous humour of the eye. Invest. Ophthalmol. Vis. Sci. 1996, 37 (3).

96Friedrich, S. W.; Saville, B. A.; Cheng, Y. L.; Rootman, D. S., Pharmacokinetic differences between ocular inserts and eyedrops. J. Ocul. Pharmacol. Ther. 1996, 12 (1), 5-18.

97Gennaro, G.; Hübner, P.; Sandmeier, U.; Yakunin, A. F.; Hallenbeck, P. C., Cloning, characterization, and regulation of nifF from Rhodobacter capsulatus. J. Bacteriol. 1996, 178 (13), 3949-3952.

98Jimenez Hamann, M. C.; Saville, B. A., Enhancement of tyrosinase stability by immobilization on Nylon 66. Food and Bioproducts Processing: Transactions of the Institution of of Chemical Engineers, Part C 1996, 74 (1), 47-52.

99Victorio, L.; Gilbride, K. A.; Allen, D. G.; Liss, S. N., Phenotypic fingerprinting of microbial communities in wastewater treatment systems. Water Res. 1996, 30 (5), 1077-1086. https://doi.org/10.1016/0043-1354(95)00269-3
100Zheng, Y.; Allen, D. G., Biological dechlorination of model organochlorine compounds in bleached kraft mill effluents. Environ. Sci. Technol. 1996, 30 (6), 1890-1895. https://doi.org/10.1021/es950527p
101Diosady, L. L.; Alberti, J. O.; Mannar, M. G. V.; Stone, T. G., Stability of iodine in iodized salt used for correction of iodine-deficiency disorders. Food Nutr. Bull. 1997, 18 (4), 388-396.

102Dong, G.; Vieille, C.; Savchenko, A.; Zeikus, J. G., Cloning, sequencing, and expression of the gene encoding extracellular α-amylase from Pyrococcus furiosus and biochemical characterization of the recombinant enzyme. Applied and Environmental Microbiology 1997, 63 (9), 3569-3576.

103Friedrich, S.; Cheng, Y. L.; Saville, B., Drug distribution in the vitreous humor of the human eye: The effects of intravitreal injection position and volume. Curr. Eye Res. 1997, 16 (7), 663-669. https://doi.org/10.1076/ceyr.16.7.663.5061
104Friedrich, S.; Cheng, Y. L.; Saville, B., Finite element modeling of drug distribution in the vitreous humor of the rabbit eye. Ann. Biomed. Eng. 1997, 25 (2), 303-314. https://doi.org/10.1007/BF02648045
105Friedrich, S.; Saville, B.; Cheng, Y. L., Drug distribution in the vitreous humor of the human eye: The effects of aphakia and changes in retinal permeability and vitreous diffusivity. J. Ocul. Pharmacol. Ther. 1997, 13 (5), 445-459.

106Liu, H.-W.; Liss, S. N.; Allen, D. G., The influence of anoxic conditioning of sludge on enhanced AOX (adsorbable organic halogen) removal in aerobic biological treatment systems. Water Sci. Technol. 1997, 35 (2), 77-84. https://doi.org/https://doi.org/10.1016/S0273-1223(96)00917-1
107Mohseni, M.; Kautola, H.; Allen, D. G., The viscoelastic nature of filamentous fermentation broths and its influence on the directly measured yield stress. Journal of Fermentation and Bioengineering 1997, 83 (3), 281-286. https://doi.org/10.1016/S0922-338X(97)80993-2
108Thobani, M.; Diosady, L. L., Two-phase solvent extraction of canola. J. Am. Oil Chem. Soc. 1997, 74 (3), 207-214. https://doi.org/https://doi.org/10.1007/s11746-997-0125-x
109Thobani, M.; Diosady, L. L., Pilot-scale two-phase extraction of canola. J. Am. Oil Chem. Soc. 1997, 74 (3), 201-206. https://doi.org/10.1007/s11746-997-0124-y
110Tripathi, C. S.; Allen, D. G., Kinetics of organochlorine removal from bleached kraft pulp mill effluent during biological treatment. Can. J. Chem. Eng. 1997, 75 (1), 104-112.

111Xu, L.; Diosady, L. L., Rapid method for total phenolic acid determination in rapeseed/canola meals. Food Res. Int. 1997, 30 (8), 571-574. https://doi.org/10.1016/S0963-9969(98)00022-2
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113Zheng, Y.; Allen, D. G., The effect of pre-hydrolysis of D-stage filtrate on the biotreatability of chlorinated organic compounds in bleached kraft mill effluents. Water Res. 1997, 31 (7), 1595-1600. https://doi.org/10.1016/S0043-1354(96)00401-0
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115Fedorov, A. S.; Troshina, O. Y.; Laurinavichene, T. V.; Glazer, V. M.; Babykin, M. M.; Zinchenko, V. V.; Yakunin, A. F.; Tsygankov, A. A., Regulatory effect of ammonium on the nitrogenase activity of Rhodobacter sphaeroides and Rhodobacter capsulatus is not mediated by ADP-ribosylation of the fe-protein of nitrogenase. Microbiology 1998, 67 (6), 610-615.

116Fortin, N.; Fulthorpe, R. R.; Allen, D. G.; Greer, C. W., Molecular analysis of bacterial isolates and total community DNA from kraft pulp mill effluent treatment systems. Can. J. Microbiol. 1998, 44 (6), 537-546.

117Master, E. R.; Mohn, W. W., Psychrotolerant bacteria isolated from Arctic soil that degrade polychlorinated biphenyls at low temperatures. Applied and Environmental Microbiology 1998, 64 (12), 4823-4829.

118Mohseni, M.; Allen, D. G.; Nichols, K. M., Biofiltration of α-pinene and its application to the treatment of pulp and paper air emissions. Tappi J. 1998, 81 (8), 205-211.

119Nales, M.; Butler, B. J.; Edwards, E. A., Anaerobic benzene biodegradation: A microcosm survey. Bioremediation Journal 1998, 2 (2), 125-144. https://doi.org/10.1080/10889869891214268
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124Zeikus, J. G.; Vieille, C.; Savchenko, A., Thermozymes: Biotechnology and structure-function relationships. Extremophiles 1998, 2 (3), 179-183. https://doi.org/10.1007/s007920050058
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127Diosady, L. L.; Alberti, J. O.; FitzGerald, S.; Venkatesh Mannar, M. G., Field tests for iodide in salt. Food Nutr. Bull. 1999, 20 (2), 215-220.

128Ficker, M.; Krastel, K.; Orlicky, S.; Edwards, E., Molecular characterization of a toluene-degrading methanogenic consortium. Applied and Environmental Microbiology 1999, 65 (12), 5576-5585.

129McKay, R. M. L.; La Roche, J.; Yakunin, A. F.; Durnford, D. G.; Geider, R. J., Accumulation of ferredoxin and flavodoxin in a marine diatom in response to Fe. J. Phycol. 1999, 35 (3 II), 510-519.

130Mohseni, M.; Allen, D. G., Transient performance of biofilters treating mixtures of hydrophilic and hydrophobic volatile organic compounds. Journal of the Air and Waste Management Association 1999, 49 (12), 1434-1441.

131Mollah, A. H.; Allen, D. G., Biodegradation and detoxification of wood leachate from pentachlorophenol-treated poles. Can. J. Chem. Eng. 1999, 77 (5), 942-947.

132Warrington, J. C.; Saville, B. A., The effect of a perfluorochemical emulsion on enzyme reaction stability. Can. J. Chem. Eng. 1999, 77 (5), 877-882.

133Warrington, J. C.; Saville, B. A., Tyrosinase inactivation in organic solvents. Biotechnology and Bioengineering 1999, 65 (3), 325-333. https://doi.org/10.1002/(SICI)1097-0290(19991105)65:3<325::AID-BIT10>3.0.CO;2-Q
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135Yang, H.; Allen, D. G., Model-based scale-up strategy for mycelial fermentation processes. Can. J. Chem. Eng. 1999, 77 (5), 844-854.

136Ahad, J. M. E.; Lollar, B. S.; Edwards, E. A.; Slater, G. F.; Sleep, B. E., Carbon isotope fractionation during anaerobic biodegradation of toluene: Implications for intrinsic bioremediation. Environ. Sci. Technol. 2000, 34 (5), 892-896. https://doi.org/10.1021/es990797y
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143Liao, B. Q.; Allen, D. G.; Droppo, I. G.; Leppard, G. G.; Liss, S. N., Bound water content of activated sludge and its relationship to solids retention time, floc structure, and surface properties. Water Environment Research 2000, 72 (6-7), 722-730.

144Mohseni, M.; Allen, D. G., Biofiltration of mixtures of hydrophilic and hydrophobic volatile organic compounds. Chem. Eng. Sci. 2000, 55 (9), 1545-1558. https://doi.org/10.1016/S0009-2509(99)00420-0
145Shi, G.; Gong, Y.; Savchenko, A.; Zeikus, J. G.; Xiao, B.; Ji, X.; Yan, H., Dissecting the nucleotide binding properties of Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase with fluorescent 3'(2)'-o-anthraniloyladenosine 5'-triphosphate. Biochim. Biophys. Acta 2000, 1478 (2), 289-299. https://doi.org/10.1016/S0167-4838(00)00043-1
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151Konduru, R. R.; Liss, S. N.; Allen, D. G., Recalcitrant organics emerging from biological treatment of kraft mill effluents. Water Qual. Res. J. Can. 2001, 36 (4), 737-757.

152Kong, Z.; Farhana, L.; Fulthorpe, R. R.; Allen, D. G., Treatment of volatile organic compounds in a biotrickling filter under thermophilic conditions. Environ. Sci. Technol. 2001, 35 (21), 4347-4352. https://doi.org/10.1021/es010639i
153Liao, B. Q.; Allen, D. G.; Droppo, I. G.; Leppard, G. G.; Liss, S. N., Surface properties of sludge and their role in bioflocculation and settleability. Water Res. 2001, 35 (2), 339-350. https://doi.org/10.1016/S0043-1354(00)00277-3
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156Morgan-Sagastume, F.; Sleep, B. E.; Allen, D. G., Effects of biomass growth on grass pressure drop in biofilters. J. Environ. Eng. 2001, 127 (5), 388-396. https://doi.org/10.1061/(ASCE)0733-9372(2001)127:5(388)
157Savchenko, A.; Vieille, C.; Zeikus, J. G., α-Amylases and amylopullulanase from Pyrococcus furiosus. In Methods Enzymol., Academic Press: 2001; Vol. 330, pp 354-363. https://doi.org/https://doi.org/10.1016/S0076-6879(01)30388-9
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159Slater, G. F.; Lollar, B. S.; Sleep, B. E.; Edwards, E. A., Variability in carbon isotopic fractionation during biodegradation of chlorinated ethenes: Implications for field applications. Environ. Sci. Technol. 2001, 35 (5), 901-907. https://doi.org/10.1021/es001583f
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161Yakunin, A. F.; Fedorov, A. S.; Laurinavichene, T. V.; Glaser, V. M.; Egorov, N. S.; Tsygankov, A. A.; Zinchenko, V. V.; Hallenbeck, P. C., Regulation of nitrogenase in the photosynthetic bacterium Rhodobacter sphaeroides containing draTG and nifHDK genes from Rhodobacter capsulatus. Can. J. Microbiol. 2001, 47 (3), 206-212. https://doi.org/10.1139/cjm-47-3-206
162Zhang, R. G.; Skarina, T.; Katz, J. E.; Beasley, S.; Khachatryan, A.; Vyas, S.; Arrowsmith, C. H.; Clarke, S.; Edwards, A.; Joachimiak, A.; Savchenko, A., Structure of Thermotoga maritima stationary phase survival protein SurE: A novel acid phosphatase. Structure 2001, 9 (11), 1095-1106. https://doi.org/10.1016/S0969-2126(01)00675-X
163Diosady, L. L.; Alberti, J. O.; Ramcharan, K.; Venkatesh Mannar, M. G., Iodine stability in salt double-fortified with iron and iodine. Food Nutr. Bull. 2002, 23 (2), 196-207.

164Diosady, L. L.; Alberti, J. O.; Venkatesh Mannar, M. G., Microencapsulation for iodine stability in salt fortified with ferrous fumarate and potassium iodide. Food Res. Int. 2002, 35 (7), 635-642. https://doi.org/10.1016/S0963-9969(01)00166-1
165Duhamel, M.; Wehr, S. D.; Yu, L.; Rizvi, H.; Seepersad, D.; Dworatzek, S.; Cox, E. E.; Edwards, E. A., Comparison of anaerobic dechlorinating enrichment cultures maintained on tetrachloroethene, trichloroethene, cis-dichloroethene and vinyl chloride. Water Res. 2002, 36 (17), 4193-4202. https://doi.org/10.1016/S0043-1354(02)00151-3
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167Korolev, S.; Ikeguchi, Y.; Skarina, T.; Beasley, S.; Arrowsmith, C.; Edwards, A.; Joachimiak, A.; Pegg, A. E.; Savchenko, A., The crystal structure of spermidine synthase with a multisubstrate adduct inhibitor. Nat. Struct. Biol. 2002, 9 (1), 27-31. https://doi.org/10.1038/nsb737
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170Liss, S. N.; Liao, B. Q.; Droppo, I. G.; Allen, D. G.; Leppard, G. G., Effect of solids retention time on floc structure. Water Sci Technol 2002, 46 (1-2), 431-8.

171Mahadevan, R.; Doyle Iii, F. J.; Allcock, A. C., Control-relevant scheduling of polymer grade transitions. AIChE Journal 2002, 48 (8), 1754-1764. https://doi.org/10.1002/aic.690480816
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177Savchenko, A.; Vieille, C.; Kang, S.; Zeikus, J. G., Pyrococcus furiosus α-amylase is stabilized by calcium and zinc. Biochemistry 2002, 41 (19), 6193-6201. https://doi.org/10.1021/bi012106s
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182Zhang, R. G.; Kim, Y.; Skarina, T.; Beasley, S.; Laskowski, R.; Arrowsmith, C.; Edwards, A.; Joachimiak, A.; Savchenko, A., Crystal structure of Thermotoga maritima 0065, a member of the IclR transcriptional factor family. J. Biol. Chem. 2002, 277 (21), 19183-19190. https://doi.org/10.1074/jbc.M112171200
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187Dirk-Faitakis, C.; Allen, D. G., Biofiltration of cyclic air emissions of α-pinene at low and high frequencies. Journal of the Air and Waste Management Association 2003, 53 (11), 1373-1383.

188Drepper, T.; Groß, S.; Yakunin, A. F.; Hallenbeck, P. C.; Masepohl, B.; Klipp, W., Role of GlnB and GlnK in ammonium control of both nitrogenase systems in the phototrophic bacterium Rhodobacter capsulatus. Microbiology 2003, 149 (8), 2203-2212.

189Francois, E.; Wang, D. Y.; Fulthorpe, R.; Liss, S. N.; Edwards, E. A., DNA microarrays for detecting endocrine-disrupting compounds. Biotechnol. Adv. 2003, 22 (1-2), 17-26. https://doi.org/10.1016/j.biotechadv.2003.08.005
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197McGuigan, A. P.; Briggs, G. A. D.; Burlakov, V. M.; Yanaka, M.; Tsukahara, Y., An elastic–plastic shear lag model for fracture of layered coatings. Thin Solid Films 2003, 424 (2), 219-223. https://doi.org/https://doi.org/10.1016/S0040-6090(02)01124-0
198Miller, D. J.; Ouellette, N.; Evdokimova, E.; Savchenko, A.; Edwards, A.; Anderson, W. F., Crystal complexes of a predicted S-adenosylmethionine-dependent methyltransferase reveal a typical AdoMet binding domain and a substrate recognition domain. Protein Sci. 2003, 12 (7), 1432-1442. https://doi.org/10.1110/ps.0302403
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215Zhang, R. G.; Duke, N.; Laskowski, R.; Evdokimova, E.; Skarina, T.; Edwards, A.; Joachimiak, A.; Savchenko, A., Conserved protein YecM from Escherichia coli shows structural homology to metal-binding isomerases and oxygenases. Proteins: Structure, Function and Genetics 2003, 51 (2), 311-314. https://doi.org/10.1002/prot.10307
216Bray, J. E.; Marsden, R. L.; Rison, S. C. G.; Savchenko, A.; Edwards, A. M.; Thornton, J. M.; Orengo, C. A., A practical and robust sequence search strategy for structural genomics target selection. Bioinformatics 2004, 20 (14), 2288-2295. https://doi.org/10.1093/bioinformatics/bth240
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218Dinglasan, M. J. A.; Ye, Y.; Edwards, E. A.; Mabury, S. A., Fluorotelomer alcohol biodegradation yields poly- and perfluorinated acids. Environ. Sci. Technol. 2004, 38 (10), 2857-2864.

219Duhamel, M.; Mo, K.; Edwards, E. A., Characterization of a highly enriched Dehalococcoides-containing culture that grows on vinyl chloride and trichloroethene. Applied and Environmental Microbiology 2004, 70 (9), 5538-5545. https://doi.org/10.1128/AEM.70.9.5538-5545.2004
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226Miller, M. J.; Allen, D. G., Transport of hydrophobic pollutants through biofilms in biofilters. Chem. Eng. Sci. 2004, 59 (17), 3515-3525. https://doi.org/10.1016/j.ces.2004.05.011
227Oshinowo, T.; Diosady, L.; Yusufali, R.; Laleye, L., Stability of salt double-fortified with ferrous fumarate and potassium iodate or iodide under storage and distribution conditions in Kenya. Food Nutr. Bull. 2004, 25 (3), 264-270.

228Proudfoot, M.; Kuznetsova, E.; Brown, G.; Rao, N. N.; Kitagawa, M.; Mori, H.; Savchenko, A.; Yakunin, A. F., General enzymatic screens identify three new nucleotidases in Escherichia coli: Biochemical characterization of SurE, YfbR, and YjjG. J. Biol. Chem. 2004, 279 (52), 54687-54694. https://doi.org/10.1074/jbc.M411023200
229Sanishvili, R.; Beasley, S.; Skarina, T.; Glesne, D.; Joachimiak, A.; Edwards, A.; Savchenko, A., The crystal structure of Escherichia coli MoaB suggests a probable role in molybdenum cofactor synthesis. J. Biol. Chem. 2004, 279 (40), 42139-42146. https://doi.org/10.1074/jbc.M407694200
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231Savchenko, A.; Skarina, T.; Evdokimova, E.; Watson, J. D.; Laskowski, R.; Arrowsmith, C. H.; Edwards, A. M.; Joachimiak, A.; Zhang, R. G., X-Ray crystal structure of CutA from Thermotoga maritima at 1.4 Å Resolution. Proteins: Structure, Function and Genetics 2004, 54 (1), 162-165. https://doi.org/10.1002/prot.10585
232Saville, B. A.; Khavkine, M.; Seetharam, G.; Marandi, B.; Zuo, Y. L., Characterization and performance of immobilized amylase and cellulase. Applied Biochemistry and Biotechnology - Part A Enzyme Engineering and Biotechnology 2004, 113 (1-3), 251-259. https://doi.org/10.1385/ABAB:113:1-3:251
233Waller, A. S.; Cox, E. E.; Edwards, E. A., Perchlorate-reducing microorganisms isolated from contaminated sites. Environ. Microbiol. 2004, 6 (5), 517-527. https://doi.org/10.1111/j.1462-2920.2004.00598.x
234Wang, D. Y.; Fulthorpe, R.; Liss, S. N.; Edwards, E. A., Identification of estrogen-responsive genes by complementary deoxyribonucleic acid microarray and characterization of a novel early estrogen-induced gene: EEIG1. Mol. Endocrinol. 2004, 18 (2), 402-411. https://doi.org/10.1210/me.2003-0202
235Wang, D. Y.; McKague, B.; Liss, S. N.; Edwards, E. A., Gene expression profiles for detecting and distinguishing potential endocrine-disrupting compounds in environmental samples. Environ. Sci. Technol. 2004, 38 (23), 6396-6406. https://doi.org/10.1021/es049235r
236Wiback, S. J.; Mahadevan, R.; Palsson, B. Ø., Using metabolic flux data to further constrain the metabolic solution space and predict internal flux patterns: The Escherichia coli spectrum. Biotechnology and Bioengineering 2004, 86 (3), 317-331. https://doi.org/10.1002/bit.20011
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240Chartrand, M. M. G.; Waller, A.; Mattes, T. E.; Elsner, M.; Lacrampe-Couloume, G.; Gossett, J. M.; Edwards, E. A.; Lollar, B. S., Carbon isotopic fractionation during aerobic vinyl chloride degradation. Environ. Sci. Technol. 2005, 39 (4), 1064-1070. https://doi.org/10.1021/es0492945
241Chen, S.; Yakunin, A. F.; Proudfoot, M.; Kim, R.; Kim, S. H., Structural and functional characterization of a 5,10- methenyltetrahydrofolate synthetase from Mycoplasma pneumoniae (GI: 13508087). Proteins: Structure, Function and Genetics 2005, 61 (2), 433-443. https://doi.org/10.1002/prot.20591
242Cuff, M. E.; Miller, D. J.; Korolev, S.; Xu, X.; Anderson, W. F.; Edwards, A.; Joachimiak, A.; Savchenko, A., Crystal structure of a predicted precorrin-8x methylmutase from Thermoplasma acidophilum. Proteins: Structure, Function and Genetics 2005, 58 (3), 751-754. https://doi.org/10.1002/prot.20022
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244Dirk-Faitakis, C.; Allen, D. G., Development and simulation studies of an unsteady state biofilter model for the treatment of cyclic air emissions of an α-pinene gas stream. Journal of Chemical Technology and Biotechnology 2005, 80 (7), 737-745. https://doi.org/10.1002/jctb.1200
245Dobrovetsky, E.; Ming, L. L.; Andorn-Broza, R.; Khutoreskaya, G.; Bray, J. E.; Savchenko, A.; Arrowsmith, C. H.; Edwards, A. M.; Koth, C. M., High-throughput production of prokaryotic membrane proteins. Journal of Structural and Functional Genomics 2005, 6 (1), 33-50. https://doi.org/10.1007/s10969-005-1363-5
246Famili, I.; Mahadevan, R.; Palsson, B. O., k-Cone analysis: Determining all candidate values for kinetic parameters on a network scale. Biophys. J. 2005, 88 (3), 1616-1625. https://doi.org/10.1529/biophysj.104.050385
247Gadkar, K. G.; Doyle Iii, F. J.; Edwards, J. S.; Mahadevan, R., Estimating optimal profiles of genetic alterations using constraint-based models. Biotechnology and Bioengineering 2005, 89 (2), 243-251. https://doi.org/10.1002/bit.20349
248Ghodsvali, A.; Khodaparast, M. H. H.; Vosoughi, M.; Diosady, L. L., Preparation of canola protein materials using membrane technology and evaluation of meals functional properties. Food Res. Int. 2005, 38 (2), 223-231. https://doi.org/10.1016/j.foodres.2004.10.007
249Kuznetsova, E.; Proudfoot, M.; Sanders, S. A.; Reinking, J.; Savchenko, A.; Arrowsmith, C. H.; Edwards, A. M.; Yakunin, A. F., Enzyme genomics: Application of general enzymatic screens to discover new enzymes. FEMS Microbiol. Rev. 2005, 29 (2), 263-279. https://doi.org/10.1016/j.femsre.2004.12.006
250Mahadevan, R.; Burgard, A. P.; Famili, I.; Van Dien, S.; Schilling, C. H., Applications of metabolic modeling to drive bioprocess development for the production of value-added chemicals. Biotechnology and Bioprocess Engineering 2005, 10 (5), 408-417.

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252Master, E. R.; McKinlay, J. J.; Stewart, G. R.; Mohn, W. W., Biphenyl uptake by psychrotolerant Pseudomonas sp. strain Cam-1 and mesophilic Burkholderia sp. strain LB400. Can. J. Microbiol. 2005, 51 (5), 399-404. https://doi.org/10.1139/w05-013
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254Miller, M. J.; Allen, D. G., Modelling transport and degradation of hydrophobic pollutants in biofilter biofilms. Chem. Eng. J. 2005, 113 (2-3), 197-204. https://doi.org/10.1016/j.cej.2005.03.008
255Mohseni, M.; Koh, L. H.; Kuhn, D. C. S.; Allen, D. G., Ultraviolet photooxidation for the biodegradability enhancement of airborne o-xylene. J. Environ. Eng. Sci. 2005, 4 (4), 279-286. https://doi.org/10.1139/s04-060
256Morgan-Sagastume, F.; Allen, D. G., Activated sludge deflocculation under temperature upshifts from 30 to 45°C. Water Res. 2005, 39 (6), 1061-1074. https://doi.org/10.1016/j.watres.2004.12.027
257Morgan-Sagastume, F.; Allen, D. G., Physicochemical properties and stability of activated sludge flocs under temperature upshifts from 30 to 45°C. Journal of Colloid and Interface Science 2005, 281 (1), 136-145. https://doi.org/10.1016/j.jcis.2004.08.026
258Morrill, P. L.; Lacrampe-Couloume, G.; Slater, G. F.; Sleep, B. E.; Edwards, E. A.; McMaster, M. L.; Major, D. W.; Lollar, B. S., Quantifying chlorinated ethene degradation during reductive dechlorination at Kelly AFB using stable carbon isotopes. J. Contam. Hydrol. 2005, 76 (3-4), 279-293. https://doi.org/10.1016/j.jconhyd.2004.11.002
259Qian, S. X.; Jancarik, J.; Lou, Y.; Kuznetsova, K.; Yakunin, A. F.; Yokota, H.; Adams, P.; Kim, R.; Kim, S. H., Crystal structures of a phosphotransacetylase from Bacillus subtilis and its complex with acetyl phosphate. Journal of Structural and Functional Genomics 2005, 6 (4), 269-279. https://doi.org/10.1007/s10969-005-9001-9
260Sanders, D. A. R.; Walker, J. R.; Skarina, T.; Savchenko, A., The X-ray crystal structure of PA3566 from Pseudomonas aureginosa at 1.8 Å resolution. Proteins: Structure, Function and Genetics 2005, 61 (1), 209-212. https://doi.org/10.1002/prot.20503
261Savchenko, A.; Krogatt, N.; Cort, J. R.; Evdokimova, E.; Lew, J. M.; Yee, A. A.; Sánchez-Pulido, L.; Andrade, M. A.; Bochkarev, A.; Watson, J. D.; Kennedy, M. A.; Greenblatt, J.; Hughes, T.; Arrowsmith, C. H.; Rommens, J. M.; Edwards, A. M., The Shwachman-Bodian-Diamond syndrome protein family is involved in RNA metabolism. J. Biol. Chem. 2005, 280 (19), 19213-19220. https://doi.org/10.1074/jbc.M414421200
262Scott, H. E.; Liss, S. N.; Farnood, R. R.; Allen, D. G., Ultraviolet disinfection of sequencing batch reactor effluent: A study of physicochemical properties of microbial floc and disinfection performance. J. Environ. Eng. Sci. 2005, 4 (SUPPL. 1), S65-S74. https://doi.org/10.1139/s04-076
263Sosnik, A.; Leung, B.; McGuigan, A. P.; Sefton, M. V., Collagen/poloxamine hydrogels: Cytocompatibility of embedded HepG2 cells and surface-attached endothelial cells. Tissue Eng. 2005, 11 (11-12), 1807-1816. https://doi.org/10.1089/ten.2005.11.1807
264Sun, W.; Xu, X.; Pavlova, M.; Edwards, A. M.; Joachimiak, A.; Savchenko, A.; Christendat, D., The crystal structure of a novel SAM-dependent methyltransferase PH1915 from Pyrococcus horikoshii. Protein Sci. 2005, 14 (12), 3121-3128. https://doi.org/10.1110/ps.051821805
265Ulrich, A. C.; Beller, H. R.; Edwards, E. A., Metabolites detected during biodegradation of 13C 6-benzene in nitrate-reducing and methanogenic enrichment cultures. Environ. Sci. Technol. 2005, 39 (17), 6681-6691. https://doi.org/10.1021/es050294u
266Waller, A. S.; Krajmalnik-Brown, R.; Löffler, F. E.; Edwards, E. A., Multiple reductive-dehalogenase-homologous genes are simultaneously transcribed during dechlorination by Dehalococcoides-containing cultures. Applied and Environmental Microbiology 2005, 71 (12), 8257-8264. https://doi.org/10.1128/AEM.71.12.8257-8264.2005
267Yang, H.; Allen, D. G., Potential improvement in biofilter design through the use of heterogeneous packing and a conical biofilter geometry. J. Environ. Eng. 2005, 131 (4), 504-511. https://doi.org/10.1061/(ASCE)0733-9372(2005)131:4(504)
268Yee, A. A.; Savchenko, A.; Ignachenko, A.; Lukin, J.; Xu, X.; Skarina, T.; Evdokimova, E.; Liu, C. S.; Semesi, A.; Guido, V.; Edwards, A. M.; Arrowsmith, C. H., NMR and X-ray crystallography, complementary tools in structural proteomics of small proteins. Journal of the American Chemical Society 2005, 127 (47), 16512-16517. https://doi.org/10.1021/ja053565+
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271Dinglasan-Panlilio, M. J.; Dworatzek, S.; Mabury, S.; Edwards, E., Microbial oxidation of 1,2-dichloroethane under anoxic conditions with nitrate as electron acceptor in mixed and pure cultures. FEMS Microbiol. Ecol. 2006, 56 (3), 355-364. https://doi.org/10.1111/j.1574-6941.2006.00077.x
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273Duhamel, M.; Edwards, E. A., Microbial composition of chlorinated ethene-degrading cultures dominated by Dehalococcoides. FEMS Microbiol. Ecol. 2006, 58 (3), 538-549. https://doi.org/10.1111/j.1574-6941.2006.00191.x
274Gadkar, K. G.; Mahadevan, R.; Doyle Iii, F. J., Optimal genetic manipulations in batch bioreactor control. Automatica 2006, 42 (10), 1723-1733. https://doi.org/10.1016/j.automatica.2006.05.004
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276Gonzalez, C. F.; Proudfoot, M.; Brown, G.; Korniyenko, Y.; Mori, H.; Savchenko, A. V.; Yakunin, A. F., Molecular basis of formaldehyde detoxification: Characterization of two S-formylglutathione hydrolases from Escherichia coli, FrmB and YeiG. J. Biol. Chem. 2006, 281 (20), 14514-14522. https://doi.org/10.1074/jbc.M600996200
277Gorelik, M.; Lunin, V. V.; Skarina, T.; Savchenko, A., Structural characterization of GntR/HutC family signaling domain. Protein Sci. 2006, 15 (6), 1506-1511. https://doi.org/10.1110/ps.062146906
278Grostern, A.; Edwards, E. A., A 1,1,1-trichloroethane-degrading anaerobic mixed microbial culture enhances biotransformation of mixtures of chlorinated ethenes and ethanes. Applied and Environmental Microbiology 2006, 72 (12), 7849-7856. https://doi.org/10.1128/AEM.01269-06
279Grostern, A.; Edwards, E. A., Growth of Dehalobacter and Dehalococcoides spp. during degradation of chlorinated ethanes. Applied and Environmental Microbiology 2006, 72 (1), 428-436. https://doi.org/10.1128/AEM.72.1.428-436.2006
280Kuznetsova, E.; Proudfoot, M.; Gonzalez, C. F.; Brown, G.; Omelchenko, M. V.; Borozan, I.; Carmel, L.; Wolf, Y. I.; Mori, H.; Savchenko, A. V.; Arrowsmith, C. H.; Koonin, E. V.; Edwards, A. M.; Yakunin, A. F., Genome-wide analysis of substrate specificities of the Escherichia coli haloacid dehalogenase-like phosphatase family. J. Biol. Chem. 2006, 281 (47), 36149-36161. https://doi.org/10.1074/jbc.M605449200
281Liu, J. R.; Liu, C. T.; Edwards, E. A.; Liss, S. N., Effect of phosphorus limitation on microbial floc structure and gene expression in activated sludge. Water Sci. Technol. 2006, 54 (1), 247-255. https://doi.org/10.2166/wst.2006.393
282Löffler, F. E.; Edwards, E. A., Harnessing microbial activities for environmental cleanup. Curr. Opin. Biotechnol. 2006, 17 (3), 274-284. https://doi.org/10.1016/j.copbio.2006.05.001
283Mahadevan, R.; Bond, D. R.; Butler, J. E.; Esteve-Nuñez, A.; Coppi, M. V.; Palsson, B. O.; Schilling, C. H.; Lovley, D. R., Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling. Applied and Environmental Microbiology 2006, 72 (2), 1558-1568. https://doi.org/10.1128/AEM.72.2.1558-1568.2006
284Mancini, S. A.; Hirschorn, S. K.; Elsner, M.; Lacrampe-Couloume, G.; Sleep, B. E.; Edwards, E. A.; Lollar, B. S., Effects of trace element concentration on enzyme controlled stable isotope fractionation during aerobic biodegradation of toluene. Environ. Sci. Technol. 2006, 40 (24), 7675-7681. https://doi.org/10.1021/es061363n
285Marnoch, R.; Diosady, L. L., Production of mustard protein isolates from oriental mustard seed (Brassica juncea L.). J. Am. Oil Chem. Soc. 2006, 83 (1), 65-69. https://doi.org/https://doi.org/10.1007/s11746-006-1177-z
286McGuigan, A. P.; Sefton, M. V., Vascularized organoid engineered by modular assembly enables blood perfusion. Proceedings of the National Academy of Sciences of the United States of America 2006, 103 (31), 11461-11466. https://doi.org/10.1073/pnas.0602740103
287Morrill, P. L.; Sleep, B. E.; Slater, G. F.; Edwards, E. A.; Lollar, B. S., Evaluation of isotopic enrichment factors for the biodegradation of chlorinated ethenes using a parameter estimation model: Toward an improved quantification of biodegradation. Environ. Sci. Technol. 2006, 40 (12), 3886-3892. https://doi.org/10.1021/es051513e
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583Lücker, P. B.; Javaherian, S.; Soleas, J. P.; Halverson, D.; Zandstra, P. W.; McGuigan, A. P., A microgroove patterned multiwell cell culture plate for high-throughput studies of cell alignment. Biotechnology and Bioengineering 2014, 111 (12), 2537-2548. https://doi.org/10.1002/bit.25298
584Luo, F.; Gitiafroz, R.; Devine, C. E.; Gong, Y.; Hug, L. A.; Raskin, L.; Edwards, E. A., Metatranscriptome of an anaerobic benzene-degrading, nitrate-reducing enrichment culture reveals involvement of carboxylation in benzene ring activation. Applied and Environmental Microbiology 2014, 80 (14), 4095-4107. https://doi.org/10.1128/AEM.00717-14
585Meyer, T.; Edwards, E. A., Anaerobic digestion of pulp and paper mill wastewater and sludge. Water Res. 2014, 65, 321-349. https://doi.org/10.1016/j.watres.2014.07.022
586Meziane-Cherif, D.; Stogios, P. J.; Evdokimova, E.; Savchenko, A.; Courvalin, P., Structural basis for the evolution of vancomycin resistance D,D-peptidases. Proceedings of the National Academy of Sciences of the United States of America 2014, 111 (16), 5872-5877. https://doi.org/10.1073/pnas.1402259111
587Paz, A. C.; Soleas, J.; Poon, J. C. H.; Trieu, D.; Waddell, T. K.; McGuigan, A. P., Challenges and opportunities for tissue-engineering polarized epithelium. Tissue Engineering - Part B: Reviews 2014, 20 (1), 56-72. https://doi.org/10.1089/ten.teb.2013.0144
588Pérez-De-Mora, A.; Zila, A.; McMaster, M. L.; Edwards, E. A., Bioremediation of chlorinated ethenes in fractured bedrock and associated changes in dechlorinating and nondechlorinating microbial populations. Environ. Sci. Technol. 2014, 48 (10), 5770-5779. https://doi.org/10.1021/es404122y
589Pourbafrani, M.; McKechnie, J.; Shen, T.; Saville, B. A.; Maclean, H. L., Impacts of pre-treatment technologies and co-products on greenhouse gas emissions and energy use of lignocellulosic ethanol production. Journal of Cleaner Production 2014, 78, 104-111. https://doi.org/10.1016/j.jclepro.2014.04.050
590Prapakornwiriya, N.; Diosady, L. L., Recovery of Sinapic Acid from the Waste Effluent of Mustard Protein Isolation by Ion Exchange Chromatography. J. Am. Oil Chem. Soc. 2014, 91 (2), 357-362. https://doi.org/https://doi.org/10.1007/s11746-013-2366-1
591Schnurr, P. J.; Espie, G. S.; Allen, D. G., The effect of light direction and suspended cell concentrations on algal biofilm growth rates. Applied Microbiology and Biotechnology 2014, 98 (20), 8553-8562. https://doi.org/10.1007/s00253-014-5964-4
592Sinichi, S.; Diosady, L. L., Isopropyl Alcohol Extraction of De-hulled Yellow Mustard Flour. J. Am. Oil Chem. Soc. 2014, 91 (12), 2143-2153. https://doi.org/https://doi.org/10.1007/s11746-014-2556-5
593Stogios, P. J.; Kuhn, M. L.; Evdokimova, E.; Courvalin, P.; Anderson, W. F.; Savchenko, A., Potential for reduction of streptogramin a resistance revealed by structural analysis of acetyltransferase VatA. Antimicrobial Agents and Chemotherapy 2014, 58 (12), 7083-7092. https://doi.org/10.1128/AAC.03743-14
594Suzuki, H.; Vuong, T. V.; Gong, Y.; Chan, K.; Ho, C. Y.; Master, E. R.; Kondo, A., Sequence diversity and gene expression analyses of expansin-related proteins in the white-rot basidiomycete, Phanerochaete carnosa. Fungal Genetics and Biology 2014, 72, 115-123. https://doi.org/10.1016/j.fgb.2014.05.008
595Tabtabaei, S.; Boocock, D. G. B.; Diosady, L. L., Biodiesel Feedstock from Emulsions Produced by Aqueous Processing of Yellow Mustard. J. Am. Oil Chem. Soc. 2014, 91 (7), 1269-1282. https://doi.org/https://doi.org/10.1007/s11746-014-2448-8
596Trieu, D.; Waddell, T. K.; McGuigan, A. P., A microfluidic device to apply shear stresses to polarizing ciliated airway epithelium using air flow. Biomicrofluidics 2014, 8 (6). https://doi.org/10.1063/1.4901930
597Vuong, T. V.; Master, E. R., Fusion of a xylan-binding module to gluco-oligosaccharide oxidase increases activity and promotes stable immobilization. PLoS One 2014, 9 (4), e95170. https://doi.org/10.1371/journal.pone.0095170
598Wang, W.; Mai-Gisondi, G.; Stogios, P. J.; Kaur, A.; Xu, X.; Cui, H.; Turunen, O.; Savchenko, A.; Master, E. R., Elucidation of the molecular basis for arabinoxylan-debranching activity of a thermostable family GH62 α-L-arabinofuranosidase from Streptomyces thermoviolaceus. Applied and Environmental Microbiology 2014, 80 (17), 5317-5329. https://doi.org/10.1128/AEM.00685-14
599Alcaide, M.; Stogios, P. J.; Lafraya, A.; Tchigvintsev, A.; Flick, R.; Bargiela, R.; Chernikova, T. N.; Reva, O. N.; Hai, T.; Leggewie, C. C.; Katzke, N.; La Cono, V.; Matesanz, R.; Jebbar, M.; Jaeger, K. E.; Yakimov, M. M.; Yakunin, A. F.; Golyshin, P. N.; Golyshina, O. V.; Savchenko, A.; Ferrer, M., Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats. Environ. Microbiol. 2015, 17 (2), 332-345. https://doi.org/10.1111/1462-2920.12660
600Alcaide, M.; Tchigvintsev, A.; Martínez-Martínez, M.; Popovic, A.; Reva, O. N.; Lafraya, Á.; Bargiela, R.; Nechitaylo, T. Y.; Matesanz, R.; Cambon-Bonavita, M. A.; Jebbar, M.; Yakimov, M. M.; Savchenko, A.; Golyshina, O. V.; Yakunin, A. F.; Golyshin, P. N.; Ferrer, M., Identification and characterization of carboxyl esterases of gill chamber-associated microbiota in the deep-sea shrimp Rimicaris exoculata by using functional metagenomics. Applied and Environmental Microbiology 2015, 81 (6), 2125-2136. https://doi.org/10.1128/AEM.03387-14
601Beloglazova, N.; Kuznedelov, K.; Flick, R.; Datsenko, K. A.; Brown, G.; Popovic, A.; Lemak, S.; Semenova, E.; Severinov, K.; Yakunin, A. F., CRISPR RNA binding and DNA target recognition by purified Cascade complexes from Escherichia coli. Nucleic Acids Res. 2015, 43 (1), 530-543. https://doi.org/10.1093/nar/gku1285
602Beloglazova, N.; Lemak, S.; Flick, R.; Yakunin, A. F., Analysis of nuclease activity of Cas1 proteins against complex DNA substrates. Methods Mol. Biol. 2015, 1311, 251-64. https://doi.org/10.1007/978-1-4939-2687-9_16
603Bonilla, S.; Tran, H.; Allen, D. G., Enhancing pulp and paper mill biosludge dewaterability using enzymes. Water Res. 2015, 68, 692-700. https://doi.org/10.1016/j.watres.2014.10.057
604Couturier, M.; Navarro, D.; Chevret, D.; Henrissat, B.; Piumi, F.; Ruiz-Dueñas, F. J.; Martinez, A. T.; Grigoriev, I. V.; Riley, R.; Lipzen, A.; Berrin, J. G.; Master, E. R.; Rosso, M. N., Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus. Biotechnol Biofuels 2015, 8, 216. https://doi.org/10.1186/s13068-015-0407-8
605Cox, G.; Stogios, P. J.; Savchenko, A.; Wright, G. D., Structural and molecular basis for resistance to aminoglycoside antibiotics by the adenylyltransferase ANT(2″)-Ia. mBio 2015, 6 (1). https://doi.org/10.1128/mBio.02180-14
606Crowe, A. M.; Stogios, P. J.; Casabon, I.; Evdokimova, E.; Savchenko, A.; Eltis, L. D., Structural and functional characterization of a ketosteroid transcriptional regulator of Mycobacterium tuberculosis. J. Biol. Chem. 2015, 290 (2), 872-882. https://doi.org/10.1074/jbc.M114.607481
607D'Arcangelo, E.; McGuigan, A. P., Micropatterning strategies to engineer controlled cell and tissue architecture in vitro. BioTechniques 2015, 58 (1), 13-23. https://doi.org/10.2144/000114245
608Dumitrache, A.; Eberl, H. J.; Allen, D. G.; Wolfaardt, G. M., Mathematical modeling to validate on-line CO2 measurements as a metric for cellulolytic biofilm activity in continuous-flow bioreactors. Biochem. Eng. J. 2015, 101, 55-67. https://doi.org/10.1016/j.bej.2015.04.022
609Ebrahim, A.; Almaas, E.; Bauer, E.; Bordbar, A.; Burgard, A. P.; Chang, R. L.; Dräger, A.; Famili, I.; Feist, A. M.; Fleming, R. M. T.; Fong, S. S.; Hatzimanikatis, V.; Holder, A.; Hucka, M.; Hyduke, D.; Jamshidi, N.; Lee, S. Y.; Le Novère, N.; Lerman, J. A.; Lewis, N. E.; Ma, D.; Mahadevan, R.; Maranas, C.; Nagarajan, H.; Navid, A.; Nielsen, J.; Nielsen, L. K.; Nogales, J.; Noronha, A.; Pal, C.; Palsson, B. O.; Papin, J. A.; Patil, K. R.; Price, N. D.; Reed, J. L.; Saunders, M.; Senger, R. S.; Sonnenschein, N.; Sun, Y.; Thiele, I., Do genome-scale models need exact solvers or clearer standards? Mol. Syst. Biol. 2015, 11 (10), 831. https://doi.org/10.15252/msb.20156157
610Foumani, M.; Vuong, T. V.; MacCormick, B.; Master, E. R., Enhanced Polysaccharide Binding and Activity on Linear β-Glucans through Addition of Carbohydrate-Binding Modules to Either Terminus of a Glucooligosaccharide Oxidase. PLoS One 2015, 10 (5), e0125398. https://doi.org/10.1371/journal.pone.0125398
611Gandla, M. L.; Derba-Maceluch, M.; Liu, X.; Gerber, L.; Master, E. R.; Mellerowicz, E. J.; Jönsson, L. J., Expression of a fungal glucuronoyl esterase in Populus: Effects on wood properties and saccharification efficiency. Phytochemistry 2015, 112 (1), 210-220. https://doi.org/10.1016/j.phytochem.2014.06.002
612Gaona, A.; Lawryshyn, Y.; Saville, B., The effect of fed-batch operation and rotational speed on high-solids enzymatic hydrolysis of hardwood substrates. Industrial Biotechnology 2015, 11 (5), 277-283. https://doi.org/10.1089/ind.2014.0031
613Gawand, P.; Said Abukar, F.; Venayak, N.; Partow, S.; Motter, A. E.; Mahadevan, R., Sub-optimal phenotypes of double-knockout mutants of Escherichia coli depend on the order of gene deletions. Integrative biology : quantitative biosciences from nano to macro 2015, 7 (8), 930-939. https://doi.org/10.1039/c5ib00096c
614Genin, S. N.; Aitchison, J. S.; Allen, D. G., Novel waveguide reactor design for enhancing algal biofilm growth. Algal Research 2015, 12, 529-538. https://doi.org/10.1016/j.algal.2015.10.013
615Gold, N. D.; Gowen, C. M.; Lussier, F.-X.; Cautha, S. C.; Mahadevan, R.; Martin, V. J. J., Metabolic engineering of a tyrosine-overproducing yeast platform using targeted metabolomics. Microbial Cell Factories 2015, 14 (1), 73. https://doi.org/10.1186/s12934-015-0252-2
616Halavaty, A. S.; Rich, R. L.; Chen, C.; Joo, J. C.; Minasov, G.; Dubrovska, I.; Winsor, J. R.; Myszka, D. G.; Duban, M.; Shuvalova, L.; Yakunin, A. F.; Anderson, W. F., Structural and functional analysis of betaine aldehyde dehydrogenase from Staphylococcus aureus. Acta Crystallogr. Sect. D. Biol. Crystallogr. 2015, 71, 1159-1175. https://doi.org/10.1107/S1399004715004228
617Hug, L. A.; Edwards, E. A., Corrigendum: Diversity of reductive dehalogenase genes from environmental samples and enrichment cultures identified with degenerate primer PCR screens. Front. Microbiol. 2015, 6, 30. https://doi.org/10.3389/fmicb.2015.00030
618Huynh, E.; Leung, B. Y. C.; Helfield, B. L.; Shakiba, M.; Gandier, J. A.; Jin, C. S.; Master, E. R.; Wilson, B. C.; Goertz, D. E.; Zheng, G., In situ conversion of porphyrin microbubbles to nanoparticles for multimodality imaging. Nature Nanotechnology 2015, 10 (4), 325-332. https://doi.org/10.1038/nnano.2015.25
619Islam, M. A.; Zengler, K.; Edwards, E. A.; Mahadevan, R.; Stephanopoulos, G., Investigating Moorella thermoacetica metabolism with a genome-scale constraint-based metabolic model. Integrative biology : quantitative biosciences from nano to macro 2015, 7 (8), 869-882. https://doi.org/10.1039/c5ib00095e
620Javaherian, S.; D'Arcangelo, E.; Slater, B.; Zulueta-Coarasa, T.; Fernandez-Gonzalez, R.; McGuigan, A. P., An in vitro model of tissue boundary formation for dissecting the contribution of different boundary forming mechanisms. Integrative biology : quantitative biosciences from nano to macro 2015, 7 (3), 298-312. https://doi.org/10.1039/c4ib00272e
621Kaur, A. P.; Nocek, B. P.; Xu, X.; Lowden, M. J.; Leyva, J. F.; Stogios, P. J.; Cui, H.; Di Leo, R.; Powlowski, J.; Tsang, A.; Savchenko, A., Functional and structural diversity in GH62 α-L-arabinofuranosidases from the thermophilic fungus Scytalidium thermophilum. Microb. Biotechnol. 2015, 8 (3), 419-433. https://doi.org/10.1111/1751-7915.12168
622Klamt, S.; Mahadevan, R., On the feasibility of growth-coupled product synthesis in microbial strains. Metab. Eng. 2015, 30, 166-178. https://doi.org/10.1016/j.ymben.2015.05.006
623Kocur, C. M. D.; Lomheim, L.; Boparai, H. K.; Chowdhury, A. I. A.; Weber, K. P.; Austrins, L. M.; Edwards, E. A.; Sleep, B. E.; O'Carroll, D. M., Contributions of abiotic and biotic dechlorination following carboxymethyl cellulose stabilized nanoscale zero valent iron injection. Environ. Sci. Technol. 2015, 49 (14), 8648-8656. https://doi.org/10.1021/acs.est.5b00719
624Kuznetsova, E.; Nocek, B.; Brown, G.; Makarova, K. S.; Flick, R.; Wolf, Y. I.; Khusnutdinova, A.; Evdokimova, E.; Jin, K.; Tan, K.; Hanson, A. D.; Hasnain, G.; Zallot, R.; De Crécy-Lagard, V.; Babu, M.; Savchenko, A.; Joachimiak, A.; Edwards, A. M.; Koonin, E. V.; Yakunin, A. F., Functional diversity of haloacid dehalogenase superfamily phosphatases from Saccharomyces cerevisiae: Biochemical, structural, and evolutionary insights. J. Biol. Chem. 2015, 290 (30), 18678-18698. https://doi.org/10.1074/jbc.M115.657916
625Liang, X.; Molenda, O.; Tang, S.; Edwards, E. A., Identity and substrate specificity of reductive dehalogenases expressed in Dehalococcoides-containing enrichment cultures maintained on different chlorinated ethenes. Applied and Environmental Microbiology 2015, 81 (14), 4626-4633. https://doi.org/10.1128/AEM.00536-15
626Littunen, K.; Kilpeläinen, P.; Junka, K.; Sipponen, M.; Master, E. R.; Seppälä, J., Effect of xylan structure on reactivity in graft copolymerization and subsequent binding to cellulose. Biomacromolecules 2015, 16 (4), 1102-1111. https://doi.org/10.1021/bm501732b
627Luk, J. M.; Saville, B. A.; MacLean, H. L., Life cycle air emissions impacts and ownership costs of light-duty vehicles using natural gas as a primary energy source. Environ. Sci. Technol. 2015, 49 (8), 5151-5160. https://doi.org/10.1021/es5045387
628Mahadevan, R.; Von Kamp, A.; Klamt, S., Genome-scale strain designs based on regulatory minimal cut sets. Bioinformatics 2015, 31 (17), 2844-2851. https://doi.org/10.1093/bioinformatics/btv217
629Mai-Gisondi, G.; Turunen, O.; Pastinen, O.; Pahimanolis, N.; Master, E. R., Enhancement of acetyl xylan esterase activity on cellulose acetate through fusion to a family 3 cellulose binding module. Enzyme and Microbial Technology 2015, 79-80, 27-33. https://doi.org/10.1016/j.enzmictec.2015.07.001
630Makarova, K. S.; Wolf, Y. I.; Alkhnbashi, O. S.; Costa, F.; Shah, S. A.; Saunders, S. J.; Barrangou, R.; Brouns, S. J. J.; Charpentier, E.; Haft, D. H.; Horvath, P.; Moineau, S.; Mojica, F. J. M.; Terns, R. M.; Terns, M. P.; White, M. F.; Yakunin, A. F.; Garrett, R. A.; Van Der Oost, J.; Backofen, R.; Koonin, E. V., An updated evolutionary classification of CRISPR-Cas systems. Nature Reviews Microbiology 2015, 13 (11), 722-736. https://doi.org/10.1038/nrmicro3569
631McKechnie, J.; Pourbafrani, M.; Saville, B. A.; MacLean, H. L., Environmental and financial implications of ethanol as a bioethylene feedstock versus as a transportation fuel. Environmental Research Letters 2015, 10 (12). https://doi.org/10.1088/1748-9326/10/12/124018
632McKechnie, J.; Pourbafrani, M.; Saville, B. A.; MacLean, H. L., Exploring impacts of process technology development and regional factors on life cycle greenhouse gas emissions of corn stover ethanol. Renewable Energy 2015, 76, 726-734. https://doi.org/10.1016/j.renene.2014.11.088
633Meyer, T.; Edwards, E. A., Corrigendum to "Anaerobic digestion of pulp and paper mill wastewater and sludge" [Water Res. 65 (2014) 321-349]. Water Res. 2015, 68, 849. https://doi.org/10.1016/j.watres.2014.10.059
634Meziane-Cherif, D.; Stogios, P. J.; Evdokimova, E.; Egorova, O.; Savchenko, A.; Courvalin, P., Structural and functional adaptation of vancomycin resistance vant serine racemases. mBio 2015, 6 (4). https://doi.org/10.1128/mBio.00806-15
635Morar, M.; Evdokimova, E.; Chang, C.; Ensminger, A. W.; Savchenko, A., Crystal structure of the Legionella pneumophila lem 10 effector reveals a new member of the HD protein superfamily. Proteins: Structure, Function and Bioinformatics 2015, 83 (12), 2319-2325. https://doi.org/10.1002/prot.24933
636Mulder, D. T.; McPhee, J. B.; Reid-Yu, S. A.; Stogios, P. J.; Savchenko, A.; Coombes, B. K., Multiple histidines in the periplasmic domain of the Salmonella enterica sensor kinase SsrA enhance signaling in response to extracellular acidification. Mol. Microbiol. 2015, 95 (4), 678-691. https://doi.org/10.1111/mmi.12895
637Nakayasu, E. S.; Sydor, M. A.; Brown, R. N.; Sontag, R. L.; Sobreira, T. J. P.; Slysz, G. W.; Humphrys, D. R.; Skarina, T.; Onoprienko, O.; Di Leo, R.; Deatherage Kaiser, B. L.; Li, J.; Ansong, C.; Cambronne, E. D.; Smith, R. D.; Savchenko, A.; Adkins, J. N., Identification of Salmonella typhimurium deubiquitinase SseL substrates by immunoaffinity enrichment and quantitative proteomic analysis. J. Proteome Res. 2015, 14 (9), 4029-4038. https://doi.org/10.1021/acs.jproteome.5b00574
638Namazi, A. B.; Allen, D. G.; Jia, C. Q., Effect of chemical components in white liquor on carbon activation. Can. J. Chem. Eng. 2015, 93 (10), 1705-1712. https://doi.org/10.1002/cjce.22281
639Namazi, A. B.; Allen, D. G.; Jia, C. Q., Microwave-assisted pyrolysis and activation of pulp mill sludge. Biomass Bioenergy 2015, 73, 217-224. https://doi.org/10.1016/j.biombioe.2014.12.023
640Namazi, A. B.; Allen, D. G.; Jia, C. Q., Probing microwave heating of lignocellulosic biomasses. J. Anal. Appl. Pyrolysis 2015, 112, 121-128. https://doi.org/10.1016/j.jaap.2015.02.009
641Pahimanolis, N.; Kilpeläinen, P.; Master, E.; Ilvesniemi, H.; Seppälä, J., Novel thiol- amine- and amino acid functional xylan derivatives synthesized by thiol-ene reaction. Carbohydr. Polym. 2015, 131, 392-398. https://doi.org/10.1016/j.carbpol.2015.06.007
642Parikka, K.; Master, E.; Tenkanen, M., Oxidation with galactose oxidase: Multifunctional enzymatic catalysis. J. Mol. Catal. B: Enzym. 2015, 120, 47-59. https://doi.org/10.1016/j.molcatb.2015.06.006
643Placido, A.; Hai, T.; Ferrer, M.; Chernikova, T. N.; Distaso, M.; Armstrong, D.; Yakunin, A. F.; Toshchakov, S. V.; Yakimov, M. M.; Kublanov, I. V.; Golyshina, O. V.; Pesole, G.; Ceci, L. R.; Golyshin, P. N., Diversity of hydrolases from hydrothermal vent sediments of the Levante Bay, Vulcano Island (Aeolian archipelago) identified by activity-based metagenomics and biochemical characterization of new esterases and an arabinopyranosidase. Applied Microbiology and Biotechnology 2015, 99 (23), 10031-10046. https://doi.org/10.1007/s00253-015-6873-x
644Popovic, A.; Tchigvintsev, A.; Tran, H.; Chernikova, T. N.; Golyshina, O. V.; Yakimov, M. M.; Golyshin, P. N.; Yakunin, A. F., Metagenomics as a Tool for Enzyme Discovery: Hydrolytic Enzymes from Marine-Related Metagenomes. Adv Exp Med Biol 2015, 883, 1-20. https://doi.org/10.1007/978-3-319-23603-2_1
645Quaile, A. T.; Urbanus, M. L.; Stogios, P. J.; Nocek, B.; Skarina, T.; Ensminger, A. W.; Savchenko, A., Molecular Characterization of LubX: Functional Divergence of the U-Box Fold by Legionella pneumophila. Structure 2015, 23 (8), 1459-1469. https://doi.org/10.1016/j.str.2015.05.020
646Samadifard, N.; Devine, C. E.; Edwards, E.; Mahadevan, K.; Papangelakis, V. G., Ferric sulfate leaching of pyrrhotite tailings between 30 to 55 °C. Minerals 2015, 5 (4), 801-814. https://doi.org/10.3390/min5040526
647Schnurr, P. J.; Allen, D. G., Factors affecting algae biofilm growth and lipid production: A review. Renewable and Sustainable Energy Reviews 2015, 52, 418-429. https://doi.org/10.1016/j.rser.2015.07.090
648Selig, M. J.; Thygesen, L. G.; Felby, C.; Master, E. R., Debranching of soluble wheat arabinoxylan dramatically enhances recalcitrant binding to cellulose. Biotechnology Letters 2015, 37 (3), 633-641. https://doi.org/10.1007/s10529-014-1705-0
649Selig, M. J.; Vuong, T. V.; Gudmundsson, M.; Forsberg, Z.; Westereng, B.; Felby, C.; Master, E. R., Modified cellobiohydrolase–cellulose interactions following treatment with lytic polysaccharide monooxygenase CelS2 (ScLPMO10C) observed by QCM-D. Cellulose 2015, 22 (4), 2263-2270. https://doi.org/10.1007/s10570-015-0635-x
650Semenova, E.; Kuznedelov, K.; Datsenko, K. A.; Boudry, P. M.; Savitskaya, E. E.; Medvedeva, S.; Beloglazova, N.; Logacheva, M.; Yakunin, A. F.; Severinov, K., The Cas6e ribonuclease is not required for interference and adaptation by the E. Coli type I-E CRISPR-Cas system. Nucleic Acids Res. 2015, 43 (12), 6049-6061. https://doi.org/10.1093/nar/gkv546
651Serbanescu, M. A.; Cordova, M.; Krastel, K.; Flick, R.; Beloglazova, N.; Latos, A.; Yakunin, A. F.; Senadheera, D. B.; Cvitkovitch, D. G., Role of the Streptococcus mutans CRISPR-Cas systems in immunity and cell physiology. J. Bacteriol. 2015, 197 (4), 749-761. https://doi.org/10.1128/JB.02333-14
652Sinichi, S.; Diosady, L. L., Isopropyl alcohol extraction of mustard oil. International News on Fats, Oils and Related Materials 2015, 26 (3), 179-182. https://doi.org/10.21748/inform.03.2015.178
653Soleas, J. P.; Waddell, T. K.; McGuigan, A. P., Topographically grooved gel inserts for aligning epithelial cells during air-liquid-interface culture. Biomaterials Science 2015, 3 (1), 121-133. https://doi.org/10.1039/c4bm00237g
654Sontag, R. L.; Mihai, C.; Orr, G.; Savchenko, A.; Skarina, T.; Cui, H.; Cort, J. R.; Adkins, J. N.; Brown, R. N., Electroporation of functional bacterial effectors into mammalian cells. Journal of Visualized Experiments 2015, (95). https://doi.org/10.3791/52296
655Srinivasan, S.; Cluett, W. R.; Mahadevan, R., Constructing kinetic models of metabolism at genome-scales: A review. Biotechnol. J. 2015, 10 (9), 1345-1359. https://doi.org/10.1002/biot.201400522
656Stogios, P. J.; Evdokimova, E.; Morar, M.; Koteva, K.; Wright, G. D.; Courvalin, P.; Savchenko, A., Structural and functional plasticity of antibiotic resistance nucleotidylyltransferases revealed by molecular characterization of lincosamide nucleotidylyltransferases Lnu(A) and Lnu(D). J. Mol. Biol. 2015, 427 (12), 2229-2243. https://doi.org/10.1016/j.jmb.2015.04.008
657Tabtabaei, S.; Boocock, D. G. B.; Diosady, L. L., Biodiesel Production from Mustard Emulsion by a Combined Destabilization/Adsorption Process. J. Am. Oil Chem. Soc. 2015, 92 (8), 1205-1217. https://doi.org/10.1007/s11746-015-2677-5
658Tchigvintsev, A.; Tran, H.; Popovic, A.; Kovacic, F.; Brown, G.; Flick, R.; Hajighasemi, M.; Egorova, O.; Somody, J. C.; Tchigvintsev, D.; Khusnutdinova, A.; Chernikova, T. N.; Golyshina, O. V.; Yakimov, M. M.; Savchenko, A.; Golyshin, P. N.; Jaeger, K. E.; Yakunin, A. F., The environment shapes microbial enzymes: Five cold-active and salt-resistant carboxylesterases from marine metagenomes. Applied Microbiology and Biotechnology 2015, 99 (5), 2165-2178. https://doi.org/10.1007/s00253-014-6038-3
659Toh, S.; Holbrook-Smith, D.; Stogios, P. J.; Onopriyenko, O.; Lumba, S.; Tsuchiya, Y.; Savchenko, A.; McCourt, P., Structure-function analysis identifies highly sensitive strigolactone receptors in Striga. Science 2015, 350 (6257), 203-207. https://doi.org/10.1126/science.aac9476
660Tsai, A. Y. L.; Goacher, R. E.; Master, E. R., Detecting changes in Arabidopsis cell wall composition using time-of-flight secondary ion mass spectrometry. Surf. Interface Anal. 2015, 47 (5), 626-631. https://doi.org/10.1002/sia.5756
661Venayak, N.; Anesiadis, N.; Cluett, W. R.; Mahadevan, R., Engineering metabolism through dynamic control. Curr. Opin. Biotechnol. 2015, 34, 142-152. https://doi.org/10.1016/j.copbio.2014.12.022
662Wallenius, J.; Pahimanolis, N.; Zoppe, J.; Kilpeläinen, P.; Master, E.; Ilvesniemi, H.; Seppälä, J.; Eerikäinen, T.; Ojamo, H., Continuous propionic acid production with Propionibacterium acidipropionici immobilized in a novel xylan hydrogel matrix. Bioresour. Technol. 2015, 197, 1-6. https://doi.org/10.1016/j.biortech.2015.08.037
663Yang, L.; Srinivasan, S.; Mahadevan, R.; Cluett, W. R., Characterizing metabolic pathway diversification in the context of perturbation size. Metab. Eng. 2015, 28, 114-122. https://doi.org/10.1016/j.ymben.2014.11.013
664Bonilla T, S.; Allen, D. G., Flocculation with lysozyme: A Non-Enzymatic Application. Can. J. Chem. Eng. 2016, 94 (2), 231-237. https://doi.org/10.1002/cjce.22386
665Chen, S.; White, C. E.; diCenzo, G. C.; Zhang, Y.; Stogios, P. J.; Savchenko, A.; Finan, T. M., L-Hydroxyproline and D-proline catabolism in Sinorhizobium meliloti. J. Bacteriol. 2016, 198 (7), 1171-1181. https://doi.org/10.1128/JB.00961-15
666Chu, P. L.; Vanderghem, C.; MacLean, H. L.; Saville, B. A., Financial analysis and risk assessment of hydroprocessed renewable jet fuel production from camelina, carinata and used cooking oil. Applied Energy 2016, 198, 401-409. https://doi.org/10.1016/j.apenergy.2016.12.001
667Euler, C. K.; Mahadevan, R., Protein-level control of metabolism: Design principles and prospects from a representative system. IFAC-PapersOnLine 2016, 49 (26), 165-170. https://doi.org/10.1016/j.ifacol.2016.12.120
668Fitamo, T. M.; Dahl, O.; Master, E.; Meyer, T., Biochemical methane potential of kraft bleaching effluent and codigestion with other in-mill streams. Tappi J. 2016, 15 (2), 80-88. https://doi.org/10.32964/tj15.2.80
669Gagarinova, A.; Stewart, G.; Samanfar, B.; Phanse, S.; White, C. A.; Aoki, H.; Deineko, V.; Beloglazova, N.; Yakunin, A. F.; Golshani, A.; Brown, E. D.; Babu, M.; Emili, A., Systematic genetic screens reveal the dynamic global functional organization of the bacterial translation machinery. Cell Rep. 2016, 17 (3), 904-916. https://doi.org/10.1016/j.celrep.2016.09.040
670Gerbrandt, K.; Chu, P. L.; Simmonds, A.; Mullins, K. A.; MacLean, H. L.; Griffin, W. M.; Saville, B. A., Life cycle assessment of lignocellulosic ethanol: A review of key factors and methods affecting calculated GHG emissions and energy use. Curr. Opin. Biotechnol. 2016, 38, 63-70. https://doi.org/10.1016/j.copbio.2015.12.021
671Griffin, W. M.; Saville, B. A.; MacLean, H. L., Chapter 2 - Ethanol Use in the United States: Status, Threats and the Potential Future. In Global Bioethanol, Salles-Filho, S. L. M.; Cortez, L. A. B.; da Silveira, J. M. F. J.; Trindade, S. C.; Fonseca, M. d. G. D., Eds. Academic Press: 2016; pp 34-62. https://doi.org/https://doi.org/10.1016/B978-0-12-803141-4.00002-2
672Hajighasemi, M.; Nocek, B. P.; Tchigvintsev, A.; Brown, G.; Flick, R.; Xu, X.; Cui, H.; Hai, T.; Joachimiak, A.; Golyshin, P. N.; Savchenko, A.; Edwards, E. A.; Yakunin, A. F., Biochemical and structural insights into enzymatic depolymerization of polylactic acid and other polyesters by microbial carboxylesterases. Biomacromolecules 2016, 17 (6), 2027-2039. https://doi.org/10.1021/acs.biomac.6b00223
673Huang, L.; Khusnutdinova, A.; Nocek, B.; Brown, G.; Xu, X.; Cui, H.; Petit, P.; Flick, R.; Zallot, R.; Balmant, K.; Ziemak, M. J.; Shanklin, J.; De Crécy-Lagard, V.; Fiehn, O.; Gregory, J. F.; Joachimiak, A.; Savchenko, A.; Yakunin, A. F.; Hanson, A. D., A family of metal-dependent phosphatases implicated in metabolite damage-control. Nat. Chem. Biol. 2016, 12 (8), 621-627. https://doi.org/10.1038/nchembio.2108
674Islam, M. A.; Tchigvintsev, A.; Yim, V.; Savchenko, A.; Yakunin, A. F.; Mahadevan, R.; Edwards, E. A., Experimental validation of in silico model-predicted isocitrate dehydrogenase and phosphomannose isomerase from Dehalococcoides mccartyi. Microb. Biotechnol. 2016, 9 (1), 47-60. https://doi.org/10.1111/1751-7915.12315
675Khaksar Toroghi, M.; Cluett, W. R.; Mahadevan, K., Multi-scale metabolic modelling approach for predicting blood alcohol concentration. IEEE Life Sciences Letters 2016, 2 (4), 59-62.

676Kocur, C. M. D.; Lomheim, L.; Molenda, O.; Weber, K. P.; Austrins, L. M.; Sleep, B. E.; Boparai, H. K.; Edwards, E. A.; O'Carroll, D. M., Long-term field study of microbial community and dechlorinating activity following carboxymethyl cellulose-stabilized nanoscale zero-valent iron injection. Environ. Sci. Technol. 2016, 50 (14), 7658-7670. https://doi.org/10.1021/acs.est.6b01745
677Kumar, A.; Beloglazova, N.; Bundalovic-Torma, C.; Phanse, S.; Deineko, V.; Gagarinova, A.; Musso, G.; Vlasblom, J.; Lemak, S.; Hooshyar, M.; Minic, Z.; Wagih, O.; Mosca, R.; Aloy, P.; Golshani, A.; Parkinson, J.; Emili, A.; Yakunin, A. F.; Babu, M., Conditional epistatic interaction maps reveal global functional rewiring of genome integrity pathways in Escherichia coli. Cell Rep. 2016, 14 (3), 648-661. https://doi.org/10.1016/j.celrep.2015.12.060
678Luk, J. M.; Saville, B. A.; MacLean, H. L., Impact of non-petroleum vehicle fuel economy on GHG mitigation potential. Environmental Research Letters 2016, 11 (4). https://doi.org/10.1088/1748-9326/11/4/044001
679Luk, J. M.; Saville, B. A.; MacLean, H. L., Vehicle attribute trade-offs to meet the 2025 CAFE fuel economy target. Transportation Research Part D: Transport and Environment 2016, 49, 154-171. https://doi.org/10.1016/j.trd.2016.09.005
680MacDonald, J.; Goacher, R. E.; Abou-Zaid, M.; Master, E. R., Comparative analysis of lignin peroxidase and manganese peroxidase activity on coniferous and deciduous wood using ToF-SIMS. Applied Microbiology and Biotechnology 2016, 100 (18), 8013-8020. https://doi.org/10.1007/s00253-016-7560-2
681Mayer-Blackwell, K.; Fincker, M.; Molenda, O.; Callahan, B.; Sewell, H.; Holmes, S.; Edwards, E. A.; Spormann, A. M., 1,2-Dichloroethane exposure alters the population structure, metabolism, and kinetics of a trichloroethene-dechlorinating Dehalococcoides mccartyi consortium. Environ. Sci. Technol. 2016, 50 (22), 12187-12196. https://doi.org/10.1021/acs.est.6b02957
682McGregor, N.; Morar, M.; Fenger, T. H.; Stogios, P.; Lenfant, N.; Yin, V.; Xu, X.; Evdokimova, E.; Cui, H.; Henrissat, B.; Savchenko, A.; Brumer, H., Structure-function analysis of a mixed-linkage β-glucanase/xyloglucanase from the key ruminal bacteroidetes Prevotella bryantii B14. J. Biol. Chem. 2016, 291 (3), 1175-1197. https://doi.org/10.1074/jbc.M115.691659
683McGuigan, A. P.; Javaherian, S., Tissue Patterning: Translating Design Principles from In Vivo to In Vitro. Annu. Rev. Biomed. Eng. 2016, 18, 1-24. https://doi.org/10.1146/annurev-bioeng-083115-032943
684McKechnie, J.; Saville, B.; MacLean, H. L., Steam-treated wood pellets: Environmental and financial implications relative to fossil fuels and conventional pellets for electricity generation. Applied Energy 2016, 180, 637-649. https://doi.org/10.1016/j.apenergy.2016.08.024
685Meyer, T.; Yang, M. I.; Tran, H. N.; Allen, D. G.; Edwards, E. A., Impact of resin and fatty acids on full-scale anaerobic treatment of pulp and paper mill effluents. Environ. Eng. Sci. 2016, 33 (6), 394-403. https://doi.org/10.1089/ees.2015.0395
686Mimura, M.; Zallot, R.; Niehaus, T. D.; Hasnain, G.; Gidda, S. K.; Nguyen, T. N. D.; Anderson, E. M.; Mullen, R. T.; Brown, G.; Yakunin, A. F.; de Crécy-Lagard, V.; Gregory, J. F., III; McCarty, D. R.; Hanson, A. D., Arabidopsis TH2 encodes the orphan enzyme thiamin monophosphate phosphatase. Plant Cell 2016, 28 (10), 2683-2696. https://doi.org/10.1105/tpc.16.00600
687Molenda, O.; Quaile, A. T.; Edwards, E. A., Dehalogenimonas sp. Strain WBC-2 genome and identification of its trans-dichloroethene reductive dehalogenase, TdrA. Applied and Environmental Microbiology 2016, 82 (1), 40-50. https://doi.org/10.1128/AEM.02017-15
688Molenda, O.; Tang, S.; Edwards Elizabeth, A., Complete Genome Sequence of Dehalococcoides mccartyi Strain WBC-2, Capable of Anaerobic Reductive Dechlorination of Vinyl Chloride. Genome Announcements 2016, 4 (6), e01375-16. https://doi.org/10.1128/genomeA.01375-16
689Mollerup, F.; Master, E., Influence of a family 29 carbohydrate binding module on the recombinant production of galactose oxidase in Pichia pastoris. Data in Brief 2016, 6, 176-183. https://doi.org/10.1016/j.dib.2015.11.032
690Mollerup, F.; Parikka, K.; Vuong, T. V.; Tenkanen, M.; Master, E., Influence of a family 29 carbohydrate binding module on the activity of galactose oxidase from Fusarium graminearum. Biochimica et Biophysica Acta - General Subjects 2016, 1860 (2), 354-362. https://doi.org/10.1016/j.bbagen.2015.10.023
691Namazi, A. B.; Allen, D. G.; Jia, C. Q., Benefits of microwave heating method in production of activated carbon. Can. J. Chem. Eng. 2016, 94 (7), 1262-1268. https://doi.org/10.1002/cjce.22521
692Otani, H.; Stogios, P. J.; Xu, X.; Nocek, B.; Li, S. N.; Savchenko, A.; Eltis, L. D., The activity of CouR, a MarR family transcriptional regulator, is modulated through a novel molecular mechanism. Nucleic Acids Res. 2016, 44 (2), 595-607. https://doi.org/10.1093/nar/gkv955
693Peniuk, G. T.; Schnurr, P. J.; Allen, D. G., Identification and quantification of suspended algae and bacteria populations using flow cytometry: applications for algae biofuel and biochemical growth systems. J. Appl. Phycol. 2016, 28 (1), 95-104. https://doi.org/10.1007/s10811-015-0569-6
694Rodenhizer, D.; Cojocari, D.; Wouters, B. G.; McGuigan, A. P., Development of TRACER: Tissue roll for analysis of cellular environment and response. Biofabrication 2016, 8 (4). https://doi.org/10.1088/1758-5090/8/4/045008
695Rodenhizer, D.; Gaude, E.; Cojocari, D.; Mahadevan, R.; Frezza, C.; Wouters, B. G.; McGuigan, A. P., A three-dimensional engineered tumour for spatial snapshot analysis of cell metabolism and phenotype in hypoxic gradients. Nature Materials 2016, 15 (2), 227-234. https://doi.org/10.1038/nmat4482
696Rolando, M.; Escoll, P.; Nora, T.; Botti, J.; Boitez, V.; Bedia, C.; Daniels, C.; Abraham, G.; Stogios, P. J.; Skarina, T.; Christophe, C.; Dervins-Ravault, D.; Cazalet, C.; Hilbi, H.; Rupasinghe, T. W. T.; Tull, D.; McConville, M. J.; Ong, S. Y.; Hartland, E. L.; Codogno, P.; Levade, T.; Naderer, T.; Savchenko, A.; Buchrieser, C., Legionella pneumophila S1P-lyase targets host sphingolipid metabolism and restrains autophagy. Proceedings of the National Academy of Sciences of the United States of America 2016, 113 (7), 1901-1906. https://doi.org/10.1073/pnas.1522067113
697Saville, B. A.; Griffin, W. M.; MacLean, H. L., Ethanol Production Technologies in the US: Status and Future Developments. In Global Bioethanol: Evolution, Risks, and Uncertainties, Elsevier Inc.: 2016; pp 163-180. https://doi.org/10.1016/B978-0-12-803141-4.00007-1
698Schnurr, P. J.; Espie, G. S.; Allen, G. D., The effect of photon flux density on algal biofilm growth and internal fatty acid concentrations. Algal Research 2016, 16, 349-356. https://doi.org/10.1016/j.algal.2016.04.001
699Schnurr, P. J.; Molenda, O.; Edwards, E.; Espie, G. S.; Allen, D. G., Improved biomass productivity in algal biofilms through synergistic interactions between photon flux density and carbon dioxide concentration. Bioresour. Technol. 2016, 219, 72-79. https://doi.org/10.1016/j.biortech.2016.06.129
700Shen, A. H.; Howell, D.; Edwards, E.; Warde, P.; Matthew, A.; Jones, J. M., The experience of patients with early-stage testicular cancer during the transition from active treatment to follow-up surveillance. Urologic Oncology: Seminars and Original Investigations 2016, 34 (4). https://doi.org/10.1016/j.urolonc.2015.09.016
701Stogios, P. J.; Cox, G.; Spanogiannopoulos, P.; Pillon, M. C.; Waglechner, N.; Skarina, T.; Koteva, K.; Guarné, A.; Savchenko, A.; Wright, G. D., Rifampin phosphotransferase is an unusual antibiotic resistance kinase. Nature Communications 2016, 7, 1-12. https://doi.org/10.1038/ncomms11343
702Tabtabaei, S.; Hijar, B.; Chen, B. K.; Diosady, L. L., Functional properties of protein isolates produced by aqueous extraction of de-hulled yellow mustard. J. Am. Oil Chem. Soc. 2016, 94 (1), 149-160. https://doi.org/10.1007/s11746-016-2922-6
703Tang, S.; Wang, P. H.; Higgins, S. A.; Löffler, F. E.; Edwards, E. A., Sister Dehalobacter Genomes Reveal Specialization in Organohalide Respiration and Recent Strain Differentiation Likely Driven by Chlorinated Substrates. Front. Microbiol. 2016, 7, 100. https://doi.org/10.3389/fmicb.2016.00100
704Toroghi, M. K.; Cluett, W. R.; Mahadevan, R., Multiscale metabolic modeling approach for predicting blood alcohol concentration. IEEE Life Sciences Letters 2016, 2 (4), 59-62. https://doi.org/10.1109/LLS.2016.2644647
705Toroghi, M. K.; Cluett, W. R.; Mahadevan, R., A multi-scale model of the whole human body based on dynamic parsimonious flux balance analysis. IFAC-PapersOnLine 2016, 49 (7), 937-942. https://doi.org/10.1016/j.ifacol.2016.07.319
706Urbanus, M. L.; Quaile, A. T.; Stogios, P. J.; Morar, M.; Rao, C.; Di Leo, R.; Evdokimova, E.; Lam, M.; Oatway, C.; Cuff, M. E.; Osipiuk, J.; Michalska, K.; Nocek, B. P.; Taipale, M.; Savchenko, A.; Ensminger, A. W., Diverse mechanisms of metaeffector activity in an intracellular bacterial pathogen, Legionella pneumophila. Mol. Syst. Biol. 2016, 12 (12). https://doi.org/10.15252/msb.20167381
707Vuong, T. V.; Foumani, M.; MacCormick, B.; Kwan, R.; Master, E. R., Direct comparison of gluco-oligosaccharide oxidase variants and glucose oxidase: substrate range and H(2)O(2) stability. Sci. Rep. 2016, 6, 37356. https://doi.org/10.1038/srep37356
708Wang, P. H.; Tang, S.; Nemr, K.; Flick, R.; Yan, J.; Mahadevan, R.; F Yakunin, A.; Löffler, F. E.; Edwards, E. A., Refined experimental annotation reveals conserved corrinoid autotrophy in chloroform-respiring Dehalobacter isolates. ISME Journal 2016, 11 (3), 626-640. https://doi.org/10.1038/ismej.2016.158
709Wang, W.; Yan, R.; Nocek, B. P.; Vuong, T. V.; Leo, R. D.; Xu, X.; Cui, H.; Gatenholm, P.; Toriz, G.; Tenkanen, M.; Savchenko, A.; Master, E. R., Biochemical and structural characterization of a five-domain GH115 α-Glucuronidase from the marine bacterium Saccharophagus degradans 2-40T. J. Biol. Chem. 2016, 291 (27), 14120-14133. https://doi.org/10.1074/jbc.M115.702944
710Wei, K.; Grostern, A.; Chan, W. W. M.; Richardson, R. E.; Edwards, E. A., Electron acceptor interactions between organohalide-respiring bacteria: Cross-feeding, competition, and inhibition. In Organohalide-Respiring Bacteria, Springer Berlin Heidelberg: 2016; pp 283-308. https://doi.org/10.1007/978-3-662-49875-0_13
711Wong, M. T.; Wang, W.; Lacourt, M.; Couturier, M.; Edwards, E. A.; Master, E. R., Substrate-Driven Convergence of the Microbial Community in Lignocellulose-Amended Enrichments of Gut Microflora from the Canadian Beaver (Castor canadensis) and North American Moose (Alces americanus). Front. Microbiol. 2016, 7, 961. https://doi.org/10.3389/fmicb.2016.00961
712Xiao, Y.; Reis, L. A.; Feric, N.; Knee, E. J.; Gu, J.; Cao, S.; Laschinger, C.; Londono, C.; Antolovich, J.; McGuigan, A. P.; Radisic, M., Diabetic wound regeneration using peptide-modified hydrogels to target re-epithelialization. Proceedings of the National Academy of Sciences of the United States of America 2016, 113 (40), E5792-E5801. https://doi.org/10.1073/pnas.1612277113
713Xu, B.; Rodenhizer, D.; Lakhani, S.; Zhang, X.; Soleas, J. P.; Ailles, L.; McGuigan, A. P., Patterning cellular compartments within TRACER cultures using sacrificial gelatin printing. Biofabrication 2016, 8 (3). https://doi.org/10.1088/1758-5090/8/3/035018
714Andberg, M.; Mollerup, F.; Parikka, K.; Koutaniemi, S.; Boer, H.; Juvonen, M.; Master, E.; Tenkanen, M.; Kruus, K., A Novel Colletotrichum graminicola Raffinose Oxidase in the AA5 Family. Applied and Environmental Microbiology 2017, 83 (20), e01383-17. https://doi.org/10.1128/AEM.01383-17
715Azimi, Y.; Liu, Y.; Tan, T. C.; Allen, D. G.; Farnood, R. R., The tail of two models: Impact of circularity and biomass non-homogeneity on UV disinfection of wastewater flocs. Water Res. 2017, 126, 70-78. https://doi.org/10.1016/j.watres.2017.09.011
716Chu, P. L.; Vanderghem, C.; MacLean, H. L.; Saville, B. A., Process modeling of hydrodeoxygenation to produce renewable jet fuel and other hydrocarbon fuels. Fuel 2017, 196, 298-305. https://doi.org/10.1016/j.fuel.2017.01.097
717Currie, M. A.; Brown, G.; Wong, A.; Ohira, T.; Sugiyama, K.; Suzuki, T.; Yakunin, A. F.; Jia, Z., Structural and functional characterization of the TYW3/Taw3 class of SAM-dependent methyltransferases. RNA 2017, 23 (3), 346-354. https://doi.org/10.1261/rna.057943
718Dueik, V.; Chen, B. K.; Diosady, L. L., Iron-Polyphenol Interaction Reduces Iron Bioavailability in Fortified Tea: Competing Complexation to Ensure Iron Bioavailability. J. Food Qual. 2017, 2017, 1805047. https://doi.org/10.1155/2017/1805047
719Dueik, V.; Diosady, L. L., Microencapsulation of iron in a reversed enteric coating using spray drying technology for double fortification of salt with iodine and iron. J. Food Process Eng. 2017, 40 (2), e12376. https://doi.org/https://doi.org/10.1111/jfpe.12376
720Gandier, J. A.; Langelaan, D. N.; Won, A.; O'Donnell, K.; Grondin, J. L.; Spencer, H. L.; Wong, P.; Tillier, E.; Yip, C.; Smith, S. P.; Master, E. R., Characterization of a Basidiomycota hydrophobin reveals the structural basis for a high-similarity Class I subdivision. Sci. Rep. 2017, 7, 45863. https://doi.org/10.1038/srep45863
721Garg, S.; Judd, K.; Mahadevan, R.; Edwards, E.; Papangelakis, V. G., Leaching characteristics of nickeliferous pyrrhotite tailings from the Sudbury, Ontario area. Can. Metall. Q. 2017, 56 (4), 372-381. https://doi.org/10.1080/00084433.2017.1361162
722Garg, S.; Papangelakis, V.; Edwards, E.; Mahadevan, R., Application of a selective dissolution protocol to quantify the terminal dissolution extents of pyrrhotite and pentlandite from pyrrhotite tailings. Int. J. Miner. Process. 2017, 158, 27-34. https://doi.org/10.1016/j.minpro.2016.11.004
723Gaskell, J.; Kersten, P.; Larrondo, L. F.; Canessa, P.; Martinez, D.; Hibbett, D.; Schmoll, M.; Kubicek, C. P.; Martinez, A. T.; Yadav, J.; Master, E.; Magnuson, J. K.; Yaver, D.; Berka, R.; Lail, K.; Chen, C.; LaButti, K.; Nolan, M.; Lipzen, A.; Aerts, A.; Riley, R.; Barry, K.; Henrissat, B.; Blanchette, R.; Grigoriev, I. V.; Cullen, D., Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12. Genomics Data 2017, 14, 21-23. https://doi.org/10.1016/j.gdata.2017.08.003
724Golyshina, O. V.; Tran, H.; Reva, O. N.; Lemak, S.; Yakunin, A. F.; Goesmann, A.; Nechitaylo, T. Y.; Lacono, V.; Smedile, F.; Slesarev, A.; Rojo, D.; Barbas, C.; Ferrer, M.; Yakimov, M. M.; Golyshin, P. N., Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum YT. Sci. Rep. 2017, 7 (1). https://doi.org/10.1038/s41598-017-03904-5
725Guzman, I.; Thorpe, S. J.; Papangelakis, V. G., Redox potential measurement during pressure oxidation (POX) of a refractory gold ore. Can. Metall. Q. 2017, 1-8. https://doi.org/10.1080/00084433.2017.1386363
726Javaherian, S.; D'Arcangelo, E.; Slater, B.; Londono, C.; Xu, B.; McGuigan, A. P., Modulation of cellular polarization and migration by ephrin/Eph signal-mediated boundary formation. Integrative Biology (United Kingdom) 2017, 9 (12), 934-946. https://doi.org/10.1039/c7ib00176b
727Joo, J. C.; Khusnutdinova, A. N.; Flick, R.; Kim, T.; Bornscheuer, U. T.; Yakunin, A. F.; Mahadevan, R., Alkene hydrogenation activity of enoate reductases for an environmentally benign biosynthesis of adipic acid. Chemical Science 2017, 8 (2), 1406-1413. https://doi.org/10.1039/c6sc02842j
728Kalami, S.; Arefmanesh, M.; Master, E.; Nejad, M., Replacing 100% of phenol in phenolic adhesive formulations with lignin. J. Appl. Polym. Sci. 2017, 134 (30), 45124. https://doi.org/https://doi.org/10.1002/app.45124
729Khojasteh Salkuyeh, Y.; Saville, B. A.; MacLean, H. L., Techno-economic analysis and life cycle assessment of hydrogen production from natural gas using current and emerging technologies. Int. J. Hydrogen Energy 2017. https://doi.org/10.1016/j.ijhydene.2017.05.219
730Khusnutdinova, A. N.; Flick, R.; Popovic, A.; Brown, G.; Tchigvintsev, A.; Nocek, B.; Correia, K.; Joo, J. C.; Mahadevan, R.; Yakunin, A. F., Exploring Bacterial Carboxylate Reductases for the Reduction of Bifunctional Carboxylic Acids. Biotechnol. J. 2017, 12 (11), 1600751. https://doi.org/https://doi.org/10.1002/biot.201600751
731Klamt, S.; Regensburger, G.; Gerstl, M. P.; Jungreuthmayer, C.; Schuster, S.; Mahadevan, R.; Zanghellini, J.; Müller, S., From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints. PLoS Comput. Biol. 2017, 13 (4), e1005409. https://doi.org/10.1371/journal.pcbi.1005409
732Kolliopoulos, G.; Holland, A. M.; Papangelakis, V. G., Modeling of density and electrical conductivity of aqueous carbonated trimethylamine (TMA–CO2–H2O) solutions at 20 °C. Monatsh. Chem. 2017, 1-8. https://doi.org/10.1007/s00706-017-2091-9
733Littunen, K.; Mai-Gisondi, G.; Seppälä, J.; Master, E. R., Enzymatically debranched xylans in graft copolymerization. Biomacromolecules 2017, 18 (5), 1634-1641. https://doi.org/10.1021/acs.biomac.7b00229
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762Gandier, J. A.; Master, E. R., Pichia pastoris is a Suitable Host for the Heterologous Expression of Predicted Class I and Class II Hydrophobins for Discovery, Study, and Application in Biotechnology. Microorganisms 2018, 6 (1), 3. https://doi.org/10.3390/microorganisms6010003
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767MacCormick, B.; Vuong, T. V.; Master, E. R., Chemo-enzymatic Synthesis of Clickable Xylo-oligosaccharide Monomers from Hardwood 4-O-Methylglucuronoxylan. Biomacromolecules 2018, 19 (2), 521-530. https://doi.org/10.1021/acs.biomac.7b01642
768Maurício da Fonseca, M. J.; Jurak, E.; Kataja, K.; Master, E. R.; Berrin, J. G.; Stals, I.; Desmet, T.; Van Landschoot, A.; Briers, Y., Analysis of the substrate specificity of α-L-arabinofuranosidases by DNA sequencer-aided fluorophore-assisted carbohydrate electrophoresis. Appl Microbiol Biotechnol 2018, 102 (23), 10091-10102. https://doi.org/10.1007/s00253-018-9389-3
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813Heavner, G. L. W.; Mansfeldt, C. B.; Wilkins, M. J.; Nicora, C. D.; Debs, G. E.; Edwards, E. A.; Richardson, R. E., Detection of Organohalide-Respiring Enzyme Biomarkers at a Bioaugmented TCE-Contaminated Field Site. Front. Microbiol. 2019, 10, 1433. https://doi.org/10.3389/fmicb.2019.01433
814Heckel, B.; Phillips, E.; Edwards, E.; Sherwood Lollar, B.; Elsner, M.; Manefield, M. J.; Lee, M., Reductive Dehalogenation of Trichloromethane by Two Different Dehalobacter restrictus Strains Reveal Opposing Dual Element Isotope Effects. Environ. Sci. Technol. 2019, 53 (5), 2332-2343. https://doi.org/10.1021/acs.est.8b03717
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818Lihl, C.; Douglas, L. M.; Franke, S.; Pérez-de-Mora, A.; Meyer, A. H.; Daubmeier, M.; Edwards, E. A.; Nijenhuis, I.; Sherwood Lollar, B.; Elsner, M., Mechanistic Dichotomy in Bacterial Trichloroethene Dechlorination Revealed by Carbon and Chlorine Isotope Effects. Environ Sci Technol 2019, 53 (8), 4245-4254. https://doi.org/10.1021/acs.est.8b06643
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821Mollerup, F.; Aumala, V.; Parikka, K.; Mathieu, Y.; Brumer, H.; Tenkanen, M.; Master, E., A family AA5_2 carbohydrate oxidase from Penicillium rubens displays functional overlap across the AA5 family. PLoS One 2019, 14 (5), e0216546. https://doi.org/10.1371/journal.pone.0216546
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825Puentes Jácome, L. A.; Wang, P. H.; Molenda, O.; Li, Y. X. J.; Islam, M. A.; Edwards, E. A., Sustained Dechlorination of Vinyl Chloride to Ethene in Dehalococcoides-Enriched Cultures Grown without Addition of Exogenous Vitamins and at Low pH. Environ Sci Technol 2019, 53 (19), 11364-11374. https://doi.org/10.1021/acs.est.9b02339
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828Sarch, C.; Suzuki, H.; Master, E. R.; Wang, W., Kinetics and regioselectivity of three GH62 α-L-arabinofuranosidases from plant pathogenic fungi. Biochimica et Biophysica Acta - General Subjects 2019, 1863 (6), 1070-1078. https://doi.org/10.1016/j.bbagen.2019.03.020
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832Toroghi, M. K.; Cluett, W. R.; Mahadevan, R., A multi-scale model for low-density lipoprotein cholesterol (LDL-C) regulation in the human body: Application to quantitative systems pharmacology. Comput. Chem. Eng. 2019, 130, 106507. https://doi.org/https://doi.org/10.1016/j.compchemeng.2019.06.032
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836Arefmanesh, M.; Vuong, T. V.; Mobley, J. K.; Alinejad, M.; Master, E. R.; Nejad, M., Bromide-Based Ionic Liquid Treatment of Hardwood Organosolv Lignin Yielded a More Reactive Biobased Polyol. Ind. Eng. Chem. Res. 2020, 59 (42), 18740-18747. https://doi.org/10.1021/acs.iecr.0c03718
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840Chen, J.; Liu, Y.; Diep, P.; Jo, A.; Nesbø, C.; Edwards, E.; Papangelakis, V.; Mahadevan, R., Complete Genome Sequence of Acidithiobacillus ferridurans JAGS, Isolated from Acidic Mine Drainage. Microbiology Resource Announcements 2020, 9 (13), e00033-20. https://doi.org/doi:10.1128/MRA.00033-20
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847Dean, T.; Li, N. T.; Cadavid, J. L.; Ailles, L.; McGuigan, A. P., A TRACER culture invasion assay to probe the impact of cancer associated fibroblasts on head and neck squamous cell carcinoma cell invasiveness. Biomaterials science 2020, 8 (11), 3078-3094. https://doi.org/10.1039/c9bm02017a
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852Kanger, K.; Guilford, N. G. H.; Lee, H.; Nesbø, C. L.; Truu, J.; Edwards, E. A., Antibiotic resistome and microbial community structure during anaerobic co-digestion of food waste, paper and cardboard. FEMS Microbiol. Ecol. 2020, 96 (2). https://doi.org/10.1093/femsec/fiaa006
853Karppi, J.; Zhao, H.; Chong, S.-L.; Koistinen, A. E.; Tenkanen, M.; Master, E., Quantitative Comparison of Pyranose Dehydrogenase Action on Diverse Xylooligosaccharides. Frontiers in Chemistry 2020, 8. https://doi.org/10.3389/fchem.2020.00011
854Kim, T.; Stogios, P. J.; Khusnutdinova, A. N.; Nemr, K.; Skarina, T.; Flick, R.; Joo, J. C.; Mahadevan, R.; Savchenko, A.; Yakunin, A. F., Rational engineering of 2-deoxyribose-5-phosphate aldolases for the biosynthesis of (R)-1,3-butanediol. J. Biol. Chem. 2020, 295 (2), 597-609. https://doi.org/10.1074/jbc.RA119.011363
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856Lau, C. H.-F.; DeJong, E. N.; Dussault, F.; Carrillo, C.; Stogios, P. J.; Savchenko, A.; Topp, E., A penicillin-binding protein that can promote advanced-generation cephalosporin resistance and genome adaptation in the opportunistic pathogen Pseudomonas aeruginosa. Int. J. Antimicrob. Agents 2020, 55 (3), 105896. https://doi.org/https://doi.org/10.1016/j.ijantimicag.2020.105896
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858Li, Y.; Khuu, N.; Prince, E.; Tao, H.; Zhang, N.; Chen, Z.; Gevorkian, A.; McGuigan, A. P.; Kumacheva, E., Matrix Stiffness-Regulated Growth of Breast Tumor Spheroids and Their Response to Chemotherapy. Biomacromolecules 2020. https://doi.org/10.1021/acs.biomac.0c01287
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860Liu, Y.; Chen, J.; Crisante, D.; Jaramillo Lopez, J. M.; Mahadevan, R., Dynamic Cell Programming with Quorum Sensing-Controlled CRISPRi Circuit. ACS Synthetic Biology 2020, 9 (6), 1284-1291. https://doi.org/10.1021/acssynbio.0c00148
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862Lomheim, L.; Laquitaine, L.; Rambinaising, S.; Flick, R.; Starostine, A.; Jean-Marius, C.; Edwards, E. A.; Gaspard, S., Evidence for extensive anaerobic dechlorination and transformation of the pesticide chlordecone (C10Cl10O) by indigenous microbes in microcosms from Guadeloupe soil. PLoS One 2020, 15 (4), e0231219. https://doi.org/10.1371/journal.pone.0231219
863Makarova, K. S.; Wolf, Y. I.; Iranzo, J.; Shmakov, S. A.; Alkhnbashi, O. S.; Brouns, S. J. J.; Charpentier, E.; Cheng, D.; Haft, D. H.; Horvath, P.; Moineau, S.; Mojica, F. J. M.; Scott, D.; Shah, S. A.; Siksnys, V.; Terns, M. P.; Venclovas, Č.; White, M. F.; Yakunin, A. F.; Yan, W.; Zhang, F.; Garrett, R. A.; Backofen, R.; van der Oost, J.; Barrangou, R.; Koonin, E. V., Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants. Nature Reviews Microbiology 2020, 18 (2), 67-83. https://doi.org/10.1038/s41579-019-0299-x
864Milovanoff, A.; Posen, I. D.; Saville, B. A.; MacLean, H. L., Well-to-wheel greenhouse gas implications of mid-level ethanol blend deployment in Canada's light-duty fleet. Renewable and Sustainable Energy Reviews 2020, 131, 110012. https://doi.org/https://doi.org/10.1016/j.rser.2020.110012
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866Molenda, O.; Puentes Jácome, L. A.; Cao, X.; Nesbø, C. L.; Tang, S.; Morson, N.; Patron, J.; Lomheim, L.; Wishart, D. S.; Edwards, E. A., Insights into origins and function of the unexplored majority of the reductive dehalogenase gene family as a result of genome assembly and ortholog group classification. Environ. Sci. Process. Impacts 2020, 22 (3), 663-678. https://doi.org/10.1039/c9em00605b
867Mottiar, Y.; Gierlinger, N.; Jeremic, D.; Master, E. R.; Mansfield, S. D., Atypical lignification in eastern leatherwood (Dirca palustris). New Phytol. 2020, 226 (3), 704-713. https://doi.org/10.1111/nph.16394
868Obnamia, J. A.; MacLean, H. L.; Saville, B. A., Regional variations in life cycle greenhouse gas emissions of canola-derived jet fuel produced in western Canada. GCB Bioenergy 2020, 12 (10), 818-833. https://doi.org/10.1111/gcbb.12735
869Paquette, A. J.; Sharp, C. E.; Schnurr, P. J.; Allen, D. G.; Short, S. M.; Espie, G. S., Dynamic changes in community composition of Scenedesmus-seeded artificial, engineered microalgal biofilms. Algal Research 2020, 46, 101805. https://doi.org/https://doi.org/10.1016/j.algal.2020.101805
870Popov, G.; Evdokimova, E.; Stogios, P. J.; Savchenko, A., Structure of the full-length Serratia marcescens acetyltransferase AAC(3)-Ia in complex with coenzyme A. Protein Sci. 2020, 29 (3), 803-808. https://doi.org/10.1002/pro.3811
871Qiao, W.; Puentes Jácome, L. A.; Tang, X.; Lomheim, L.; Yang, M. I.; Gaspard, S.; Avanzi, I. R.; Wu, J.; Ye, S.; Edwards, E. A., Microbial Communities Associated with Sustained Anaerobic Reductive Dechlorination of α-, β-, γ-, and δ-Hexachlorocyclohexane Isomers to Monochlorobenzene and Benzene. Environ. Sci. Technol. 2020, 54 (1), 255-265. https://doi.org/10.1021/acs.est.9b05558
872Raj, K.; Venayak, N.; Mahadevan, R., Novel two-stage processes for optimal chemical production in microbes. bioRxiv 2020, 803023. https://doi.org/10.1101/803023
873Semper, C.; Stogios, P.; Meziane-Cherif, D.; Evdokimova, E.; Courvalin, P.; Savchenko, A., Structural characterization of aminoglycoside 4′-O-adenylyltransferase ANT(4′)-IIb from Pseudomonas aeruginosa. Protein Sci. 2020, 29 (3), 758-767. https://doi.org/10.1002/pro.3815
874Soleas, J. P.; D'Arcangelo, E.; Huang, L.; Karoubi, G.; Nostro, M. C.; McGuigan, A. P.; Waddell, T. K., Assembly of lung progenitors into developmentally-inspired geometry drives differentiation via cellular tension. Biomaterials 2020, 254. https://doi.org/10.1016/j.biomaterials.2020.120128
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876Toroghi, M. K.; Cluett, W. R.; Mahadevan, R., A Personalized Multiscale Modeling Framework for Dose Selection in Precision Medicine. Ind. Eng. Chem. Res. 2020, 59 (21), 9819-9829. https://doi.org/10.1021/acs.iecr.0c01070
877Tratnyek, P. G.; Edwards, E.; Carpenter, L.; Blossom, S., Environmental occurrence, fate, effects, and remediation of halogenated (semi)volatile organic compounds. Environ. Sci. Process. Impacts 2020, 22 (3), 465-471. https://doi.org/10.1039/d0em90008g
878Varma, R.; Soleas, J. P.; Waddell, T. K.; Karoubi, G.; McGuigan, A. P., Current strategies and opportunities to manufacture cells for modeling human lungs. Adv. Drug Del. Rev. 2020, 161-162, 90-109. https://doi.org/10.1016/j.addr.2020.08.005
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880Vuong, T. V.; Master, E. R., Enzymatic production of 4-O-methyl d-glucaric acid from hardwood xylan. Biotechnol Biofuels 2020, 13, 51. https://doi.org/10.1186/s13068-020-01691-2
881Wang, P. H.; Fujishima, K.; Berhanu, S.; Kuruma, Y.; Jia, T. Z.; Khusnutdinova, A. N.; Yakunin, A. F.; McGlynn, S. E., A Bifunctional Polyphosphate Kinase Driving the Regeneration of Nucleoside Triphosphate and Reconstituted Cell-Free Protein Synthesis. ACS Synthetic Biology 2020, 9 (1), 36-42. https://doi.org/10.1021/acssynbio.9b00456
882Yang, M. I.; Previdsa, M.; Edwards, E. A.; Sleep, B. E., Using cell yields and qPCR to estimate biotic contribution to 1,1,1-trichloroethane dechlorination at a field site treated with granular zero valent iron and guar gum. bioRxiv 2020, 583229. https://doi.org/10.1101/583229
883Yang, M. I.; Previdsa, M.; Edwards, E. A.; Sleep, B. E., Two distinct Dehalobacter strains sequentially dechlorinate 1,1,1-trichloroethane and 1,1-dichloroethane at a field site treated with granular zero valent iron and guar gum. Water Res. 2020, 186, 116310. https://doi.org/10.1016/j.watres.2020.116310
884Bahlmann, L. C.; Baker, A. E. G.; Xue, C.; Liu, S.; Meier-Merziger, M.; Karakas, D.; Zhu, L.; Co, I.; Zhao, S.; Chin, A.; McGuigan, A.; Kuruvilla, J.; Laister, R. C.; Shoichet, M. S., Gelatin-Hyaluronan Click-Crosslinked Cryogels Elucidate Human Macrophage Invasion Behavior. Adv. Funct. Mater. 2021, 31 (28), 2008400. https://doi.org/https://doi.org/10.1002/adfm.202008400
885Biz, A.; Mahadevan, R., Overcoming Challenges in Expressing Iron–Sulfur Enzymes in Yeast. Trends Biotechnol. 2021, 39 (7), 665-677. https://doi.org/10.1016/j.tibtech.2020.11.005
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889Chen, J.; Liu, Y.; Diep, P.; Mahadevan, R., Genomic analysis of a newly isolated acidithiobacillus ferridurans jags strain reveals its adaptation to acid mine drainage. Minerals 2021, 11 (1), 1-14. https://doi.org/10.3390/min11010074
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892Edwards, E. A., Electron Balances for Nutrition and Health. J. Nutr. 2021, 151 (2), 277. https://doi.org/10.1093/jn/nxaa372
893Edwards, E. A.; Toth, C. R. A.; Luo, F.; Bawa, N.; Webb, J.; Guo, S.; Dworatzek, S., Anaerobic benzene biodegradation linked to the growth of highly specific bacterial clades. Environ. Sci. Technol. 2021, 55 (12), 7970-7980. https://doi.org/10.1021/acs.est.1c00508
894Gaona, A.; Lawryshyn, Y.; Saville, B. A., High-solids enzymatic hydrolysis of biomass: Hydrodynamics and reaction kinetics integration via numerical modeling. Phys. Fluids 2021, 33 (3), 037107. https://doi.org/10.1063/5.0036138
895Giannari, D.; Ho, C. H.; Mahadevan, R., A gap-filling algorithm for prediction of metabolic interactions in microbial communities. PLoS Comput. Biol. 2021, 17 (11), e1009060. https://doi.org/10.1371/journal.pcbi.1009060
896Haddad Momeni, M.; Fredslund, F.; Bissaro, B.; Raji, O.; Vuong, T. V.; Meier, S.; Nielsen, T. S.; Lombard, V.; Guigliarelli, B.; Biaso, F.; Haon, M.; Grisel, S.; Henrissat, B.; Welner, D. H.; Master, E. R.; Berrin, J. G.; Abou Hachem, M., Discovery of fungal oligosaccharide-oxidising flavo-enzymes with previously unknown substrates, redox-activity profiles and interplay with LPMOs. Nat Commun 2021, 12 (1), 2132. https://doi.org/10.1038/s41467-021-22372-0
897Hameleers, L.; Penttinen, L.; Ikonen, M.; Jaillot, L.; Fauré, R.; Terrapon, N.; Deuss, P. J.; Hakulinen, N.; Master, E. R.; Jurak, E., Polysaccharide utilization loci-driven enzyme discovery reveals BD-FAE: a bifunctional feruloyl and acetyl xylan esterase active on complex natural xylans. Biotechnol Biofuels 2021, 14 (1), 127. https://doi.org/10.1186/s13068-021-01976-0
898Hart, K.; An, S.; Edwards, A. M.; Mahadevan, R.; Master, E. R.; Edwards, E. A., Could open science stimulate industry partnerships in chemical engineering university research? Can. J. Chem. Eng. 2021, 99 (10), 2186-2194. https://doi.org/10.1002/cjce.24077
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900Inglis, A. M.; Head, N. A.; Chowdhury, A. I. A.; Nunez Garcia, A.; Reynolds, D. A.; Hogberg, D.; Edwards, E.; Lomheim, L.; Weber, K.; Wallace, S. J.; Austrins, L. M.; Hayman, J.; Auger, M.; Sidebottom, A.; Eimers, J.; Gerhard, J. I.; O'Carroll, D. M., Electrokinetically-enhanced emplacement of lactate in a chlorinated solvent contaminated clay site to promote bioremediation. Water Res. 2021, 201, 117305. https://doi.org/https://doi.org/10.1016/j.watres.2021.117305
901Jacome, L. A. P.; Lomheim, L.; Gaspard, S.; Edwards, E. A., Biodegradation of Lindane (Hexachlorocyclohexane) to Nontoxic End Products by Sequential Treatment with Three Mixed Anaerobic Microbial Cultures. Environ. Sci. Technol. 2021, 55 (5), 2968-2979. https://doi.org/10.1021/acs.est.0c07221
902Landon-Brace, N.; Cadavid, J. L.; Latour, S.; Co, I. L.; Rodenhizer, D.; Li, N. T.; Wu, N. C.; Bugbee, E.; Chebotarev, A.; Zhang, J.; Wouters, B. G.; McGuigan, A. P., An Engineered Patient-Derived Tumor Organoid Model That Can Be Disassembled to Study Cellular Responses in a Graded 3D Microenvironment. Adv. Funct. Mater. 2021, 31 (41), 2105349. https://doi.org/https://doi.org/10.1002/adfm.202105349
903Latour, S.; McGuigan, A. P., Easy and robust micropatterning using fibrinogen anchors. J. Cell Biol. 2021, 220 (2), e202012105. https://doi.org/10.1083/jcb.202012105
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905Lemak, S.; Serbanescu, M. A.; Khusnutdinova, A. N.; Ruszkowski, M.; Beloglazova, N.; Xu, X.; Brown, G.; Cui, H.; Tan, K.; Joachimiak, A.; Cvitkovitch, D. G.; Savchenko, A.; Yakunin, A. F., Structural and biochemical insights into CRISPR RNA processing by the Cas5c ribonuclease SMU1763 from Streptococcus mutans. J. Biol. Chem. 2021, 297 (5), 101251. https://doi.org/10.1016/j.jbc.2021.101251
906Li, Y.; Khuu, N.; Prince, E.; Tao, H.; Zhang, N.; Chen, Z.; Gevorkian, A.; McGuigan, A. P.; Kumacheva, E., Matrix Stiffness-Regulated Growth of Breast Tumor Spheroids and Their Response to Chemotherapy. Biomacromolecules 2021, 22 (2), 419-429. https://doi.org/10.1021/acs.biomac.0c01287
907Liu, Y.; Benitez, M. G.; Chen, J.; Harrison, E.; Khusnutdinova, A. N.; Mahadevan, R., Opportunities and Challenges for Microbial Synthesis of Fatty Acid-Derived Chemicals (FACs). Front Bioeng Biotechnol 2021, 9, 613322. https://doi.org/10.3389/fbioe.2021.613322
908Lomheim, L.; Flick, R.; Rambinaising, S.; Gaspard, S.; Edwards, E. A., Identification of a fully dechlorinated product of chlordecone in soil microcosms and enrichment cultures. Environ. Sci. Techno. Lett. 2021, 8 (8), 662-667. https://doi.org/10.1021/acs.estlett.1c00505
909MacAlpine, J.; Daniel-Ivad, M.; Liu, Z.; Yano, J.; Revie, N. M.; Todd, R. T.; Stogios, P. J.; Sanchez, H.; O'Meara, T. R.; Tompkins, T. A.; Savchenko, A.; Selmecki, A.; Veri, A. O.; Andes, D. R.; Fidel, P. L., Jr.; Robbins, N.; Nodwell, J.; Whitesell, L.; Cowen, L. E., A small molecule produced by Lactobacillus species blocks Candida albicans filamentation by inhibiting a DYRK1-family kinase. Nat Commun 2021, 12 (1), 6151. https://doi.org/10.1038/s41467-021-26390-w
910Mejdani, M.; Haddadi, K.; Pham, C.; Mahadevan, R., SARS-CoV-2 receptor-binding mutations and antibody contact sites. Antib. ther. 2021, 4 (3), 149-158. https://doi.org/10.1093/abt/tbab015
911Modupe, O.; Diosady, L. L., Quadruple fortification of salt for the delivery of iron, iodine, folic acid, and vitamin B(12) to vulnerable populations. J. Food Eng. 2021, 300, 110525. https://doi.org/10.1016/j.jfoodeng.2021.110525
912Modupe, O.; Krishnaswamy, K.; Li, Y. O.; Diosady, L. L., Optimization of Unit Operations for Microencapsulating Ferrous Fumarate During Scale-Up of Double Fortification of Salt with Iron and Iodine. Food Quality and Safety 2021, 5. https://doi.org/10.1093/fqsafe/fyab023
913Modupe, O.; Siddiqui, J.; Jonnalagadda, A.; Diosady, L. L., Folic acid fortification of double fortified salt. Sci. Rep. 2021, 11 (1), 14561. https://doi.org/10.1038/s41598-021-93194-9
914Nayfach, S.; Roux, S.; Seshadri, R.; Udwary, D.; Varghese, N.; Schulz, F.; Wu, D.; Paez-Espino, D.; Chen, I. M.; Huntemann, M.; Palaniappan, K.; Ladau, J.; Mukherjee, S.; Reddy, T. B. K.; Nielsen, T.; Kirton, E.; Faria, J. P.; Edirisinghe, J. N.; Henry, C. S.; Jungbluth, S. P.; Chivian, D.; Dehal, P.; Wood-Charlson, E. M.; Arkin, A. P.; Tringe, S. G.; Visel, A.; Abreu, H.; Acinas, S. G.; Allen, E.; Allen, M. A.; Alteio, L. V.; Andersen, G.; Anesio, A. M.; Attwood, G.; Avila-Magaña, V.; Badis, Y.; Bailey, J.; Baker, B.; Baldrian, P.; Barton, H. A.; Beck, D. A. C.; Becraft, E. D.; Beller, H. R.; Beman, J. M.; Bernier-Latmani, R.; Berry, T. D.; Bertagnolli, A.; Bertilsson, S.; Bhatnagar, J. M.; Bird, J. T.; Blanchard, J. L.; Blumer-Schuette, S. E.; Bohannan, B.; Borton, M. A.; Brady, A.; Brawley, S. H.; Brodie, J.; Brown, S.; Brum, J. R.; Brune, A.; Bryant, D. A.; Buchan, A.; Buckley, D. H.; Buongiorno, J.; Cadillo-Quiroz, H.; Caffrey, S. M.; Campbell, A. N.; Campbell, B.; Carr, S.; Carroll, J. L.; Cary, S. C.; Cates, A. M.; Cattolico, R. A.; Cavicchioli, R.; Chistoserdova, L.; Coleman, M. L.; Constant, P.; Conway, J. M.; Mac Cormack, W. P.; Crowe, S.; Crump, B.; Currie, C.; Daly, R.; DeAngelis, K. M.; Denef, V.; Denman, S. E.; Desta, A.; Dionisi, H.; Dodsworth, J.; Dombrowski, N.; Donohue, T.; Dopson, M.; Driscoll, T.; Dunfield, P.; Dupont, C. L.; Dynarski, K. A.; Edgcomb, V.; Edwards, E. A.; Elshahed, M. S.; Figueroa, I.; Flood, B.; Fortney, N.; Fortunato, C. S.; Francis, C.; Gachon, C. M. M.; Garcia, S. L.; Gazitua, M. C.; Gentry, T.; Gerwick, L.; Gharechahi, J.; Girguis, P.; Gladden, J.; Gradoville, M.; Grasby, S. E.; Gravuer, K.; Grettenberger, C. L.; Gruninger, R. J.; Guo, J.; Habteselassie, M. Y.; Hallam, S. J.; Hatzenpichler, R.; Hausmann, B.; Hazen, T. C.; Hedlund, B.; Henny, C.; Herfort, L.; Hernandez, M.; Hershey, O. S.; Hess, M.; Hollister, E. B.; Hug, L. A.; Hunt, D.; Jansson, J.; Jarett, J.; Kadnikov, V. V.; Kelly, C.; Kelly, R.; Kelly, W.; Kerfeld, C. A.; Kimbrel, J.; Klassen, J. L.; Konstantinidis, K. T.; Lee, L. L.; Li, W. J.; Loder, A. J.; Loy, A.; Lozada, M.; MacGregor, B.; Magnabosco, C.; Maria da Silva, A.; McKay, R. M.; McMahon, K.; McSweeney, C. S.; Medina, M.; Meredith, L.; Mizzi, J.; Mock, T.; Momper, L.; Moran, M. A.; Morgan-Lang, C.; Moser, D.; Muyzer, G.; Myrold, D.; Nash, M.; Nesbø, C. L.; Neumann, A. P.; Neumann, R. B.; Noguera, D.; Northen, T.; Norton, J.; Nowinski, B.; Nüsslein, K.; O’Malley, M. A.; Oliveira, R. S.; Maia de Oliveira, V.; Onstott, T.; Osvatic, J.; Ouyang, Y.; Pachiadaki, M.; Parnell, J.; Partida-Martinez, L. P.; Peay, K. G.; Pelletier, D.; Peng, X.; Pester, M.; Pett-Ridge, J.; Peura, S.; Pjevac, P.; Plominsky, A. M.; Poehlein, A.; Pope, P. B.; Ravin, N.; Redmond, M. C.; Reiss, R.; Rich, V.; Rinke, C.; Rodrigues, J. L. M.; Rodriguez-Reillo, W.; Rossmassler, K.; Sackett, J.; Salekdeh, G. H.; Saleska, S.; Scarborough, M.; Schachtman, D.; Schadt, C. W.; Schrenk, M.; Sczyrba, A.; Sengupta, A.; Setubal, J. C.; Shade, A.; Sharp, C.; Sherman, D. H.; Shubenkova, O. V.; Sierra-Garcia, I. N.; Simister, R.; Simon, H.; Sjöling, S.; Slonczewski, J.; Correa de Souza, R. S.; Spear, J. R.; Stegen, J. C.; Stepanauskas, R.; Stewart, F.; Suen, G.; Sullivan, M.; Sumner, D.; Swan, B. K.; Swingley, W.; Tarn, J.; Taylor, G. T.; Teeling, H.; Tekere, M.; Teske, A.; Thomas, T.; Thrash, C.; Tiedje, J.; Ting, C. S.; Tully, B.; Tyson, G.; Ulloa, O.; Valentine, D. L.; Van Goethem, M. W.; VanderGheynst, J.; Verbeke, T. J.; Vollmers, J.; Vuillemin, A.; Waldo, N. B.; Walsh, D. A.; Weimer, B. C.; Whitman, T.; van der Wielen, P.; Wilkins, M.; Williams, T. J.; Woodcroft, B.; Woolet, J.; Wrighton, K.; Ye, J.; Young, E. B.; Youssef, N. H.; Yu, F. B.; Zemskaya, T. I.; Ziels, R.; Woyke, T.; Mouncey, N. J.; Ivanova, N. N.; Kyrpides, N. C.; Eloe-Fadrosh, E. A., A genomic catalog of Earth’s microbiomes. Nat. Biotechnol. 2021, 39 (4), 499-509. https://doi.org/10.1038/s41587-020-0718-6
915Nouraei, M.; Collymore, C.; Diosady, L.; Acosta, E., HLD-NAC design and evaluation of a fully dilutable lecithin-linker SMEDDS for ibuprofen. Int J Pharm 2021, 610, 121237. https://doi.org/10.1016/j.ijpharm.2021.121237
916Pandit, A. V.; Harrison, E.; Mahadevan, R., Engineering Escherichia coli for the utilization of ethylene glycol. Microbial Cell Factories 2021, 20 (1), 22. https://doi.org/10.1186/s12934-021-01509-2
917Paraskevopoulos, M.; McGuigan, A. P., Application of CRISPR screens to investigate mammalian cell competition. Brief. Funct. Genomics 2021, 20 (3), 135-147. https://doi.org/10.1093/bfgp/elab020
918Pieters, V. M.; Co, I. L.; Wu, N. C.; McGuigan, A. P., Applications of Omics Technologies for Three-Dimensional in Vitro Disease Models. Tissue Eng. Part. C Methods 2021, 27 (3), 183-199. https://doi.org/10.1089/ten.tec.2020.0300
919Raj, K.; Venayak, N.; Diep, P.; Golla, S. A.; Yakunin, A. F.; Mahadevan, R., Automation assisted anaerobic phenotyping for metabolic engineering. Microb Cell Fact 2021, 20 (1), 184. https://doi.org/10.1186/s12934-021-01675-3
920Raji, O.; Arnling Bååth, J.; Vuong, T. V.; Larsbrink, J.; Olsson, L.; Master, E. R., The coordinated action of glucuronoyl esterase and α-glucuronidase promotes the disassembly of lignin–carbohydrate complexes. FEBS Lett. 2021, 595 (3), 351-359. https://doi.org/10.1002/1873-3468.14019
921Saffarionpour, S.; Diosady, L. L., Multiple Emulsions for Enhanced Delivery of Vitamins and Iron Micronutrients and Their Application for Food Fortification. Food and Bioprocess Technology 2021, 14 (4), 587-625. https://doi.org/10.1007/s11947-021-02586-2
922Saffarionpour, S.; Diosady, L. L., Preparation of iron-loaded water-in-oil-in-water (W1/O/W2) double emulsions: optimization using response surface methodology. J. Dispersion Sci. Technol. 2021, 1-10. https://doi.org/10.1080/01932691.2021.2008422
923Schneider, P.; Mahadevan, R.; Klamt, S., Systematizing the different notions of growth-coupled product synthesis and a single framework for computing corresponding strain designs. Biotechnol. J. 2021, 16 (12), e2100236. https://doi.org/10.1002/biot.202100236
924Soleas, J. P.; Huang, L.; D’Arcangelo, E.; Nostro, M. C.; Waddell, T. K.; McGuigan, A. P.; Karoubi, G., Guided Self-Assembly of ES-Derived Lung Progenitors into Biomimetic Tube Structures That Impact Cell Differentiation. Bioengineering 2021, 8 (12), 209. https://doi.org/10.3390/bioengineering8120209
925Stephens, S.; Mahadevan, R.; Allen, D. G., Engineering Photosynthetic Bioprocesses for Sustainable Chemical Production: A Review. Frontiers in Bioengineering and Biotechnology 2021, 8. https://doi.org/10.3389/fbioe.2020.610723
926Vatandoust, A.; Mannar, M. G. V.; Diosady, L. L., Organoleptic Effects of Salt Fortification with Iron and Iodine: A Review. J. Nutr. 2021, 151 (7), 1690-1702. https://doi.org/10.1093/jn/nxab078
927Vuong, T. V.; Singh, R.; Eltis, L. D.; Master, E. R., The Comparative Abilities of a Small Laccase and a Dye-Decoloring Peroxidase From the Same Bacterium to Transform Natural and Technical Lignins. Front. Microbiol. 2021, 12, 723524. https://doi.org/10.3389/fmicb.2021.723524
928Wu, B.; Gaskell, J.; Held, B. W.; Toapanta, C.; Vuong, T. V.; Ahrendt, S.; Lipzen, A.; Zhang, J.; Schilling, J. S.; Master, E.; Grigoriev, I. V.; Blanchette, R. A.; Cullen, D.; Hibbett, D. S., Retracted and Republished from: "Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola". Appl Environ Microbiol 2021, 87 (16), e0032921. https://doi.org/10.1128/aem.00329-21
929Yan, R.; Wang, W.; Vuong, T. V.; Xiu, Y.; Skarina, T.; Di Leo, R.; Gatenholm, P.; Toriz, G.; Tenkanen, M.; Stogios, P. J.; Master, E. R., Structural characterization of the family GH115 α-glucuronidase from Amphibacillus xylanus yields insight into its coordinated action with α-arabinofuranosidases. N. Biotechnol. 2021, 62, 49-56. https://doi.org/10.1016/j.nbt.2021.01.005
930Zhu, L.; Pei, W.; DiCiano, P.; Brands, B.; Wickens, C. M.; Foll, B. L.; Kwong, B.; Parashar, M.; Sivananthan, A.; Mahadevan, R., Physiologically-based pharmacokinetic model for predicting blood and tissue tetrahydrocannabinol concentrations. Comput. Chem. Eng. 2021, 154, 107461. https://doi.org/https://doi.org/10.1016/j.compchemeng.2021.107461
931Zhu, L.; Pei, W.; Thiele, I.; Mahadevan, R., Integration of a physiologically-based pharmacokinetic model with a whole-body, organ-resolved genome-scale model for characterization of ethanol and acetaldehyde metabolism. PLoS Comput. Biol. 2021, 17 (8), e1009110. https://doi.org/10.1371/journal.pcbi.1009110
932Arefmanesh, M.; Nikafshar, S.; Master, E. R.; Nejad, M., From acetone fractionation to lignin-based phenolic and polyurethane resins. Industrial Crops and Products 2022, 178, 114604. https://doi.org/https://doi.org/10.1016/j.indcrop.2022.114604
933Arefmanesh, M.; Vuong, T. V.; Nikafshar, S.; Wallmo, H.; Nejad, M.; Master, E. R., Enzymatic synthesis of kraft lignin-acrylate copolymers using an alkaline tolerant laccase. Applied Microbiology and Biotechnology 2022, 106 (8), 2969-2979. https://doi.org/10.1007/s00253-022-11916-z
934Arellano-Saab, A.; McErlean, C. S. P.; Lumba, S.; Savchenko, A.; Stogios, P. J.; McCourt, P., A novel strigolactone receptor antagonist provides insights into the structural inhibition, conditioning, and germination of the crop parasite Striga. J. Biol. Chem. 2022, 298 (4), 101734. https://doi.org/10.1016/j.jbc.2022.101734
935Cadavid, J. L.; Latour, S.; Nowlan, F.; Co, I. L.; Landon-Brace, N.; Wouters, B. G.; Grünwald, B. T.; Nitz, M.; Jackson, H. W.; McGuigan, A. P., An Engineered Paper-Based 3D Coculture Model of Pancreatic Cancer to Study the Impact of Tissue Architecture and Microenvironmental Gradients on Cell Phenotype. Advanced Healthcare Materials 2022, n/a (n/a), 2201846. https://doi.org/https://doi.org/10.1002/adhm.202201846
936Chan, P. W. Y.; Chakrabarti, N.; Ing, C.; Halgas, O.; To, T. K. W.; Wälti, M.; Petit, A.-P.; Tran, C.; Savchenko, A.; Yakunin, A. F.; Edwards, E. A.; Pomès, R.; Pai, E. F., Defluorination Capability of l-2-Haloacid Dehalogenases in the HAD-Like Hydrolase Superfamily Correlates with Active Site Compactness. ChemBioChem 2022, 23 (1), e202100414. https://doi.org/https://doi.org/10.1002/cbic.202100414
937Chen, J.; Liu, Y.; Diep, P.; Mahadevan, R., Genetic engineering of extremely acidophilic Acidithiobacillus species for biomining: Progress and perspectives. J. Hazard. Mater. 2022, 438, 129456. https://doi.org/10.1016/j.jhazmat.2022.129456
938Chen, J.; Liu, Y.; Diep, P.; Mahadevan, R., Harnessing synthetic biology for sustainable biomining with Fe/S-oxidizing microbes. Front Bioeng Biotechnol 2022, 10, 920639. https://doi.org/10.3389/fbioe.2022.920639
939Cheung, S. L.; Short, S. M.; Allen, D. G., The influence of wastewater pretreatment, attachment material, and inoculation strategy on the growth of target algal species in cultivated biofilms. J. Appl. Phycol. 2022, 34 (1), 113-125. https://doi.org/10.1007/s10811-021-02637-3
940Cruz, M. R.; Cristy, S.; Guha, S.; De Cesare, G. B.; Evdokimova, E.; Sanchez, H.; Borek, D.; Miramón, P.; Yano, J.; Fidel, P. L., Jr.; Savchenko, A.; Andes, D. R.; Stogios, P. J.; Lorenz, M. C.; Garsin, D. A., Structural and functional analysis of EntV reveals a 12 amino acid fragment protective against fungal infections. Nat Commun 2022, 13 (1), 6047. https://doi.org/10.1038/s41467-022-33613-1
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942Davoudi, S.; Xu, B.; Jacques, E.; Cadavid, J. L.; McFee, M.; Chin, C.-Y.; Meysami, A.; Ebrahimi, M.; Bakooshli, M. A.; Tung, K.; Ahn, H.; Ginsberg, H. J.; McGuigan, A. P.; Gilbert, P. M., MEndR: An In Vitro Functional Assay to Predict In Vivo Muscle Stem Cell-Mediated Repair. Adv. Funct. Mater. 2022, 32 (2), 2106548. https://doi.org/https://doi.org/10.1002/adfm.202106548
943Diep, P.; Cadavid, J. L.; Yakunin, A. F.; McGuigan, A. P.; Mahadevan, R., REVOLVER: A low-cost automated protein purifier based on parallel preparative gravity column workflows. HardwareX 2022, 11, e00291. https://doi.org/10.1016/j.ohx.2022.e00291
944Du Bois, A. C.; Xue, A.; Pham, C.; Revie, N. M.; Meyer, K. J.; Yashiroda, Y.; Boone, C.; Nodwell, J. R.; Stogios, P.; Savchenko, A.; Robbins, N.; Iyer, K. R.; Cowen, L. E., High-Throughput Chemical Screen Identifies a 2,5-Disubstituted Pyridine as an Inhibitor of Candida albicans Erg11. mSphere 2022, 7 (3), e0007522. https://doi.org/10.1128/msphere.00075-22
945Euler, C.; Mahadevan, R., On the design principles of metabolic flux sensing. Biophys. J. 2022, 121 (2), 237-247. https://doi.org/10.1016/j.bpj.2021.12.022
946Gonçalves, M. C. P.; Romanelli, J. P.; Cansian, A. B. M.; Pucci, E. F. Q.; Guimarães, J. R.; Tardioli, P. W.; Saville, B. A., A review on the production and recovery of sugars from lignocellulosics for use in the synthesis of bioproducts. Industrial Crops and Products 2022, 186, 115213. https://doi.org/https://doi.org/10.1016/j.indcrop.2022.115213
947Guo, S.; Toth, C. R. A.; Luo, F.; Chen, X.; Xiao, J.; Edwards, E. A., Transient Oxygen Exposure Causes Profound and Lasting Changes to a Benzene-Degrading Methanogenic Community. Environ Sci Technol 2022, 56 (18), 13036-13045. https://doi.org/10.1021/acs.est.2c02624
948Haas, D.; Thamm, A. M.; Sun, J.; Huang, L.; Sun, L.; Beaudoin, G. A. W.; Wise, K. S.; Lerma-Ortiz, C.; Bruner, S. D.; Breuer, M.; Luthey-Schulten, Z.; Lin, J.; Wilson, M. A.; Brown, G.; Yakunin, A. F.; Kurilyak, I.; Folz, J.; Fiehn, O.; Glass, J. I.; Hanson, A. D.; Henry, C. S.; de Crécy-Lagard, V., Metabolite Damage and Damage Control in a Minimal Genome. mBio 2022, 13 (4), e0163022. https://doi.org/10.1128/mbio.01630-22
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950Hayes, A. C.; Nesbø, C.; Edwards, E. A.; Jenson, E., Anaerobic Digestion of Kraft Pulp Mill Foul Condensate Under Thermophilic and Mesophilic Conditions. Environ. Eng. Sci. 2022, 39 (6), 573-583. https://doi.org/10.1089/ees.2021.0183
951Hezaveh, K.; Shinde, R. S.; Klötgen, A.; Halaby, M. J.; Lamorte, S.; Ciudad, M. T.; Quevedo, R.; Neufeld, L.; Liu, Z. Q.; Jin, R.; Grünwald, B. T.; Foerster, E. G.; Chaharlangi, D.; Guo, M.; Makhijani, P.; Zhang, X.; Pugh, T. J.; Pinto, D. M.; Co, I. L.; McGuigan, A. P.; Jang, G. H.; Khokha, R.; Ohashi, P. S.; O'Kane, G. M.; Gallinger, S.; Navarre, W. W.; Maughan, H.; Philpott, D. J.; Brooks, D. G.; McGaha, T. L., Tryptophan-derived microbial metabolites activate the aryl hydrocarbon receptor in tumor-associated macrophages to suppress anti-tumor immunity. Immunity 2022, 55 (2), 324-340.e8. https://doi.org/10.1016/j.immuni.2022.01.006
952Li, J.; Goddard-Borger, E. D.; Raji, O.; Saxena, H.; Solhi, L.; Mathieu, Y.; Master, E. R.; Wakarchuk, W. W.; Brumer, H., Chitin-Active Lytic Polysaccharide Monooxygenases Are Rare in Cellulomonas Species. Appl Environ Microbiol 2022, 88 (15), e0096822. https://doi.org/10.1128/aem.00968-22
953Li, N. T.; Wu, N. C.; Cao, R.; Cadavid, J. L.; Latour, S.; Lu, X.; Zhu, Y.; Mijalkovic, M.; Roozitalab, R.; Landon-Brace, N.; Notta, F.; McGuigan, A. P., An off-the-shelf multi-well scaffold-supported platform for tumour organoid-based tissues. Biomaterials 2022, 291, 121883. https://doi.org/10.1016/j.biomaterials.2022.121883
954Liu, Y.; Khusnutdinova, A.; Chen, J.; Crisante, D.; Batyrova, K.; Raj, K.; Feigis, M.; Shirzadi, E.; Wang, X.; Dorakhan, R.; Wang, X.; Stogios, P. J.; Yakunin, A. F.; Sargent, E. H.; Mahadevan, R., Systems engineering of Escherichia coli for n-butane production. Metab. Eng. 2022, 74, 98-107. https://doi.org/10.1016/j.ymben.2022.10.001
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956Manchel, A.; Hoek, J. B.; Bataller, R.; Mahadevan, R.; Vadigepalli, R., Patient-Specific Genome-Scale Metabolic Models for Individualized Predictions of Liver Disease. IFAC-PapersOnLine 2022, 55 (23), 148-149. https://doi.org/https://doi.org/10.1016/j.ifacol.2023.01.032
957Manchel, A.; Mahadevan, R.; Bataller, R.; Hoek, J. B.; Vadigepalli, R., Genome-Scale Metabolic Modeling Reveals Sequential Dysregulation of Glutathione Metabolism in Livers from Patients with Alcoholic Hepatitis. Metabolites 2022, 12 (12). https://doi.org/10.3390/metabo12121157
958Modupe, O.; Krishnaswamy, K.; Siddiqui, J.; Li, Y. O.; Diosady, L. L., Development and scale-up of microencapsulation-based technology for multimicronutrient fortification of salt. In Microencapsulation in the Food Industry: A Practical Implementation Guide, Elsevier: 2022; pp 529-553. https://doi.org/10.1016/B978-0-12-821683-5.00012-1
959Modupe, O.; Li, Y. O.; Diosady, L. L., Optimization of the color masking and coating unit operations for microencapsulating ferrous fumarate for double fortification of salt. J. Food Sci. Technol. 2022, 59 (8), 3120-3129. https://doi.org/10.1007/s13197-022-05426-z
960Monschein, M.; Jurak, E.; Paasela, T.; Koitto, T.; Lambauer, V.; Pavicic, M.; Enjalbert, T.; Dumon, C.; Master, E. R., PACER: a novel 3D plant cell wall model for the analysis of non-catalytic and enzymatic responses. Biotechnol Biofuels Bioprod 2022, 15 (1), 30. https://doi.org/10.1186/s13068-022-02128-8
961Nouri, S.; Holcroft, J.; Caruso, L. L.; Vuong, T. V.; Simmons, C. A.; Master, E. R.; Ganss, B., An SCPPPQ1/LAM332 protein complex enhances the adhesion and migration of oral epithelial cells: Implications for dentogingival regeneration. Acta Biomater. 2022, 147, 209-220. https://doi.org/10.1016/j.actbio.2022.05.035
962Peng, J.; Sun, J.; Yang, M. I.; Gibson, R. M.; Arts, E. J.; Olabode, A. S.; Poon, A. F. Y.; Wang, X.; Wheeler, A. R.; Edwards, E. A.; Peng, H., Early Warning Measurement of SARS-CoV-2 Variants of Concern in Wastewaters by Mass Spectrometry. Environmental Science & Technology Letters 2022, 9 (7), 638-644. https://doi.org/10.1021/acs.estlett.2c00280
963Penttinen, L.; Kouhi, V.; Fauré, R.; Skarina, T.; Stogios, P.; Master, E.; Jurak, E., Elucidating Sequence and Structural Determinants of Carbohydrate Esterases for Complete Deacetylation of Substituted Xylans. Molecules 2022, 27 (9), 2655. https://doi.org/10.3390/molecules27092655
964Peter, J. S.; Sean, D. L.; Cameron, S.; Bradley, Q.; Karolina, M.; Elena, E.; Shane, R.; Zbyszek, O.; Dominika, B.; Leah, E. C.; Alexei, S., Molecular analysis and essentiality of Aro1 shikimate biosynthesis multi-enzyme in Candida albicans. Life Science Alliance 2022, 5 (8), e202101358. https://doi.org/10.26508/lsa.202101358
965Pham, C.; Stogios, P. J.; Savchenko, A.; Mahadevan, R., Advances in engineering and optimization of transcription factor-based biosensors for plug-and-play small molecule detection. Curr. Opin. Biotechnol. 2022, 76, 102753. https://doi.org/10.1016/j.copbio.2022.102753
966Phillips, E.; Bergquist, B. A.; Chartrand, M. M. G.; Chen, W.; Edwards, E. A.; Elsner, M.; Gilevska, T.; Hirschorn, S.; Horst, A.; Lacrampe-Couloume, G.; Mancini, S. A.; McKelvie, J.; Morrill, P. L.; Ojeda, A. S.; Slater, G. F.; Sleep, B. E.; De Vera, J.; Warr, O.; Passeport, E., Compound specific isotope analysis in hydrogeology. Journal of Hydrology 2022, 615, 128588. https://doi.org/https://doi.org/10.1016/j.jhydrol.2022.128588
967Phillips, E.; Bulka, O.; Picott, K.; Kümmel, S.; Edwards, E. A.; Nijenhuis, I.; Gehre, M.; Dworatzek, S.; Webb, J.; Sherwood Lollar, B., Investigation of active site amino acid influence on carbon and chlorine isotope fractionation during reductive dechlorination. FEMS Microbiol. Ecol. 2022, 98 (8). https://doi.org/10.1093/femsec/fiac072
968Picott, K. J.; Flick, R.; Edwards, E. A., Heterologous Expression of Active Dehalobacter Respiratory Reductive Dehalogenases in Escherichia coli. Appl Environ Microbiol 2022, 88 (3), e0199321. https://doi.org/10.1128/aem.01993-21
969Pieters, V. M.; Rjaibi, S. T.; Singh, K.; Li, N. T.; Khan, S. T.; Nunes, S. S.; Dal Cin, A.; Gilbert, P. M.; McGuigan, A. P., A three-dimensional human adipocyte model of fatty acid-induced obesity. Biofabrication 2022, 14 (4), 045009. https://doi.org/10.1088/1758-5090/ac84b1
970Pileggi, V.; Shurgold, J.; Sun, J. S.; Yang, M. I.; Edwards, E. A.; Peng, H.; Tehrani, A.; Gilbride, K. A.; Oswald, C. J.; Wijayasri, S.; Al-Bargash, D.; Stuart, R.; Khansari, Z.; Raby, M.; Thomas, J.; Fletcher, T.; Simhon, A., Quantitative Trend Analysis of SARS-CoV-2 RNA in Municipal Wastewater Exemplified with Sewershed-Specific COVID-19 Clinical Case Counts. ACS ES&T Water 2022, 2 (11), 2070-2083. https://doi.org/10.1021/acsestwater.2c00058
971Prince, E.; Cruickshank, J.; Ba-Alawi, W.; Hodgson, K.; Haight, J.; Tobin, C.; Wakeman, A.; Avoulov, A.; Topolskaia, V.; Elliott, M. J.; McGuigan, A. P.; Berman, H. K.; Haibe-Kains, B.; Cescon, D. W.; Kumacheva, E., Biomimetic hydrogel supports initiation and growth of patient-derived breast tumor organoids. Nat Commun 2022, 13 (1), 1466. https://doi.org/10.1038/s41467-022-28788-6
972Prince, E.; Kheiri, S.; Wang, Y.; Xu, F.; Cruickshank, J.; Topolskaia, V.; Tao, H.; Young, E. W. K.; McGuigan, A. P.; Cescon, D. W.; Kumacheva, E., Microfluidic Arrays of Breast Tumor Spheroids for Drug Screening and Personalized Cancer Therapies. Advanced Healthcare Materials 2022, 11 (1), 2101085. https://doi.org/https://doi.org/10.1002/adhm.202101085
973Puri, S.; Rekhi, T. K.; Thomas, T.; Jadhav, M. H.; Mannar, V.; Diosady, L. L., Sensory Trial of Quintuple Fortified Salt-Salt Fortified With Iodine, Iron, Folic Acid, Vitamin B(12), and Zinc-Among Consumers in New Delhi, India. Food Nutr. Bull. 2022, 43 (3), 340-350. https://doi.org/10.1177/03795721221078361
974Qiao, W.; Liu, G.; Li, M.; Su, X.; Lu, L.; Ye, S.; Wu, J.; Edwards, E. A.; Jiang, J., Complete Reductive Dechlorination of 4-Hydroxy-chlorothalonil by Dehalogenimonas Populations. Environ Sci Technol 2022, 56 (17), 12237-12246. https://doi.org/10.1021/acs.est.2c02574
975Sabat, G.; Ahrendt, S.; Wu, B.; Gaskell, J.; Held, B. W.; Toapanta, C.; Vuong, T. V.; Lipzen, A.; Zhang, J.; Schilling, J. S.; Master, E.; Grigoriev, I. V.; Blanchette, R. A.; Hibbett, D. S.; Bhatnagar, J.; Cullen, D., Proteome of the Wood Decay Fungus Fomitopsis pinicola Is Altered by Substrate. Microbiol Resour Announc 2022, 11 (9), e0058622. https://doi.org/10.1128/mra.00586-22
976Saffarionpour, S.; Diosady, L. L., Delivery of Ferric Sodium EDTA by Water-in-Oil-in-Water (W1/O/W2) Double Emulsions: Influence of Carrier Oil on its in Vitro Bioaccessibility. Food and Bioprocess Technology 2022, 15 (2), 421-439. https://doi.org/10.1007/s11947-021-02756-2
977Saffarionpour, S.; Diosady, L. L., Delivery of curcumin through colloidal systems and its applications in functional foods. Current Opinion in Food Science 2022, 43, 155-162. https://doi.org/https://doi.org/10.1016/j.cofs.2021.12.003
978Saffarionpour, S.; Diosady, L. L., The influence of iron source, hydrophilic emulsifiers, and positioning of encapsulates on in vitro bioaccessibility and simultaneous delivery of iron and curcumin by water-in-oil-in-water (W1/O/W2) double emulsions. Journal of Food Measurement and Characterization 2022, 1-22. https://doi.org/10.1007/s11694-022-01691-w
979Saffarionpour, S.; Diosady, L. L., Curcumin, a potent therapeutic nutraceutical and its enhanced delivery and bioaccessibility by pickering emulsions. Drug Deliv Transl Res 2022, 12 (1), 124-157. https://doi.org/10.1007/s13346-021-00936-3
980Scarborough, M. J.; Lawson, C. E.; DeCola, A. C.; Gois, I. M., Microbiomes for sustainable biomanufacturing. Curr. Opin. Microbiol. 2022, 65, 8-14. https://doi.org/10.1016/j.mib.2021.09.015
981Siddiqui, J.; Modupe, O.; Vatandoust, A.; Diosady, L. L., Predicting the Stability of Double Fortified Salt by Determining the Coating Quality of the Encapsulated Iron Premix. J. Food Qual. 2022, 2022, 7812022. https://doi.org/10.1155/2022/7812022
982Sonawane, J. M.; Mahadevan, R.; Pandey, A.; Greener, J., Recent progress in microbial fuel cells using substrates from diverse sources. Heliyon 2022, 8 (12), e12353. https://doi.org/10.1016/j.heliyon.2022.e12353
983Stogios, P. J.; Bordeleau, E.; Xu, Z.; Skarina, T.; Evdokimova, E.; Chou, S.; Diorio-Toth, L.; D'Souza, A. W.; Patel, S.; Dantas, G.; Wright, G. D.; Savchenko, A., Structural and molecular rationale for the diversification of resistance mediated by the Antibiotic_NAT family. Commun Biol 2022, 5 (1), 263. https://doi.org/10.1038/s42003-022-03219-w
984Turner, M.; Saville, B., Technoeconomic evaluation of protein-rich animal feed and ethanol production from palm kernel cake. Biofuels, Bioproducts and Biorefining 2022, 16 (1), 105-121. https://doi.org/10.1002/bbb.2259
985Varma, R.; Poon, J.; Liao, Z.; Aitchison, J. S.; Waddell, T. K.; Karoubi, G.; McGuigan, A. P., Planar organization of airway epithelial cell morphology using hydrogel grooves during ciliogenesis fails to induce ciliary alignment. Biomaterials Science 2022, 10 (2), 396-409. https://doi.org/10.1039/d1bm01327k
986Vatandoust, A.; Diosady, L., Iron compounds and their organoleptic properties in salt fortification with iron and iodine: an overview. Current Opinion in Food Science 2022, 43, 232-236. https://doi.org/https://doi.org/10.1016/j.cofs.2021.12.007
987Venkatesan, M.; Semper, C.; Skrivergaard, S.; Di Leo, R.; Mesa, N.; Rasmussen, M. K.; Young, J. F.; Therkildsen, M.; Stogios, P. J.; Savchenko, A., Recombinant production of growth factors for application in cell culture. iScience 2022, 25 (10), 105054. https://doi.org/10.1016/j.isci.2022.105054
988Vuong, T. V.; Master, E. R., Enzymatic upgrading of heteroxylans for added-value chemicals and polymers. Curr. Opin. Biotechnol. 2022, 73, 51-60. https://doi.org/10.1016/j.copbio.2021.07.001
989Wu, N. C.; Cadavid, J. L.; Tan, X.; Latour, S.; Scaini, S.; Makhijani, P.; McGaha, T. L.; Ailles, L.; McGuigan, A. P., 3D microgels to quantify tumor cell properties and therapy response dynamics. Biomaterials 2022, 283, 121417. https://doi.org/10.1016/j.biomaterials.2022.121417
990Xu, Z.; Mahadevan, R., Efficient Enumeration of Branched Novel Biochemical Pathways Using a Probabilistic Technique. Ind. Eng. Chem. Res. 2022, 61 (25), 8645-8657. https://doi.org/10.1021/acs.iecr.1c02211
991Yi, S.; Morson, N.; Edwards, E. A.; Yang, D.; Liu, R.; Zhu, L.; Mabury, S. A., Anaerobic Microbial Dechlorination of 6:2 Chlorinated Polyfluorooctane Ether Sulfonate and the Underlying Mechanisms. Environ. Sci. Technol. 2022, 56 (2), 907-916. https://doi.org/10.1021/acs.est.1c05475
992Zhang, X.; Kushner, P. J.; Saville, B. A.; Posen, I. D., Cold Temperature Limits to Biodiesel Use under Present and Future Climates in North America. Environ. Sci. Technol. 2022, 56 (12), 8640-8649. https://doi.org/10.1021/acs.est.2c01699
993Zhao, H.; Karppi, J.; Nguyen, T. T. M.; Bellemare, A.; Tsang, A.; Master, E.; Tenkanen, M., Characterization of a novel AA3_1 xylooligosaccharide dehydrogenase from Thermothelomyces myriococcoides CBS 398.93. Biotechnol Biofuels Bioprod 2022, 15 (1), 135. https://doi.org/10.1186/s13068-022-02231-w
994Ghazisaidi, H.; Tran, H.; Meyer, T.; Allen, D. G., Enhancement of biosludge dewatering using proteins through dual conditioning. The Canadian Journal of Chemical Engineering 2023, 101 (6), 3226-3233. https://doi.org/https://doi.org/10.1002/cjce.24705
995Ghazisaidi, H.; Wang, V.; Fatehi, P.; Tran, H.; Meyer, T.; Allen, D. G., Determining the performance of lignin-based flocculants in improving biosludge dewaterability. J. Environ. Manage. 2023, 325. https://doi.org/10.1016/j.jenvman.2022.116509
996Mdoe, P.; Mannar, V.; Paulo, B.; Guga, G.; Mushi, C.; Kimathi, C.; Paschal, J.; Jatosh, S.; Assey, V.; Abdallah, F.; Mduma, E.; Diosady, L., Multiple micronutrients fortified salt: consumers’ acceptability survey, Tanzania. BMC Public Health 2023, 23 (1), 73. https://doi.org/10.1186/s12889-023-15000-7
997Venkatesan, M.; Fruci, M.; Verellen, L. A.; Skarina, T.; Mesa, N.; Flick, R.; Pham, C.; Mahadevan, R.; Stogios, P. J.; Savchenko, A., Molecular mechanism of plasmid-borne resistance to sulfonamide antibiotics. Nat Commun 2023, 14 (1), 4031. https://doi.org/10.1038/s41467-023-39778-7
998Yan, S.; Cheng, K. Y.; Bohu, T.; Morris, C.; Lomheim, L.; Yang, I.; Ginige, M. P.; Edwards, E.; Zheng, G.; Zhou, L.; Kaksonen, A. H., Microbial community dynamics in a feedback-redox controlled bioreactor process that enabled sequential selenate, nitrate and sulfate removal, and elemental selenium recovery. Journal of Water Process Engineering 2023, 54, 103881. https://doi.org/https://doi.org/10.1016/j.jwpe.2023.103881
999de Oliveira, R. D.; Le Roux, G. A. C.; Mahadevan, R., Nonlinear programming reformulation of dynamic flux balance analysis models. Comput. Chem. Eng. 2023, 170, 108101. https://doi.org/https://doi.org/10.1016/j.compchemeng.2022.108101
1000Liu, Y.; Chen, J.; Raj, K.; Baerg, L.; Nathan, N.; Philpott, D. J.; Mahadevan, R., A Universal Strategy to Promote Secretion of G+/G- Bacterial Extracellular Vesicles and Its Application in Host Innate Immune Responses. ACS Synthetic Biology 2023, 12 (1), 319-328. https://doi.org/10.1021/acssynbio.2c00583
1001Derba-Maceluch, M.; Mitra, M.; Hedenström, M.; Liu, X.; Gandla, M. L.; Barbut, F. R.; Abreu, I. N.; Donev, E. N.; Urbancsok, J.; Moritz, T.; Jönsson, L. J.; Tsang, A.; Powlowski, J.; Master, E. R.; Mellerowicz, E. J., Xylan glucuronic acid side chains fix suberin-like aliphatic compounds to wood cell walls. New Phytol. 2023, 238 (1), 297-312. https://doi.org/10.1111/nph.18712
1002Khan, S.; Shoaib, M.; Molaei, N.; Wani, O. B.; Chen, Z.; Vuong, T. V.; Roth, E. W.; Fiddes, L. K.; Kuzmenko, I.; Master, E. R.; Bobicki, E. R., Cellulose Nanocrystals’ Role in Critical Mineral Beneficiation: Dual Aggregate-Dispersant Behavior Supports Environmentally Benign Nickel Processing. ACS Sustainable Chem. Eng. 2023, 11 (4), 1294-1304. https://doi.org/10.1021/acssuschemeng.2c05923
1003Monschein, M.; Ioannou, E.; Koitto, T.; Al Amin, L.; Varis, J. J.; Wagner, E. R.; Mikkonen, K. S.; Cosgrove, D. J.; Master, E. R., Loosenin-Like Proteins from Phanerochaete carnosa Impact Both Cellulose and Chitin Fiber Networks. Appl Environ Microbiol 2023, 89 (1), e0186322. https://doi.org/10.1128/aem.01863-22
1004Distaso, M. A.; Chernikova, T. N.; Bargiela, R.; Coscolín, C.; Stogios, P.; Gonzalez-Alfonso, J. L.; Lemak, S.; Khusnutdinova, A. N.; Plou, F. J.; Evdokimova, E.; Savchenko, A.; Lunev, E. A.; Yakimov, M. M.; Golyshina, O. V.; Ferrer, M.; Yakunin, A. F.; Golyshin, P. N., Thermophilic Carboxylesterases from Hydrothermal Vents of the Volcanic Island of Ischia Active on Synthetic and Biobased Polymers and Mycotoxins. Appl Environ Microbiol 2023, 89 (2), e0170422. https://doi.org/10.1128/aem.01704-22
1005Popov, G.; Fiebig-Comyn, A.; Syriste, L.; Little, D. J.; Skarina, T.; Stogios, P. J.; Birstonas, S.; Coombes, B. K.; Savchenko, A., Distinct Molecular Features of NleG Type 3 Secreted Effectors Allow for Different Roles during Citrobacter rodentium Infection in Mice. Infect Immun 2023, 91 (1), e0050522. https://doi.org/10.1128/iai.00505-22
1006Okeke, I. J.; Saville, B. A.; MacLean, H. L., Low carbon hydrogen production in Canada via natural gas pyrolysis. Int. J. Hydrogen Energy 2023, 48 (34), 12581-12599. https://doi.org/https://doi.org/10.1016/j.ijhydene.2022.12.169
1007Karlikow, M.; Amalfitano, E.; Yang, X.; Doucet, J.; Chapman, A.; Mousavi, P. S.; Homme, P.; Sutyrina, P.; Chan, W.; Lemak, S.; Yakunin, A. F.; Dolezal, A. G.; Kelley, S.; Foster, L. J.; Harpur, B. A.; Pardee, K., CRISPR-induced DNA reorganization for multiplexed nucleic acid detection. Nat Commun 2023, 14 (1), 1505. https://doi.org/10.1038/s41467-023-36874-6
1008Guo, Y.; Karimullina, E.; Emde, T.; Otwinowski, Z.; Borek, D.; Savchenko, A., Monomer and dimer structures of cytochrome bo(3) ubiquinol oxidase from Escherichia coli. Protein Sci. 2023, 32 (4), e4616. https://doi.org/10.1002/pro.4616
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1010Lash, E.; Prudent, V.; Stogios, P. J.; Savchenko, A.; Noble, S. M.; Robbins, N.; Cowen, L. E., Ent2 Governs Morphogenesis and Virulence in Part through Regulation of the Cdc42 Signaling Cascade in the Fungal Pathogen Candida albicans. mBio 2023, 14 (2), e0343422. https://doi.org/10.1128/mbio.03434-22
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1012Cao, R.; Li, N. T.; Latour, S.; Cadavid, J. L.; Tan, C. M.; Forman, A.; Jackson, H. W.; McGuigan, A. P., An Automation Workflow for High-Throughput Manufacturing and Analysis of Scaffold-Supported 3D Tissue Arrays. Adv Healthc Mater 2023, e2202422. https://doi.org/10.1002/adhm.202202422
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1014Fuzzen, M.; Harper, N. B. J.; Dhiyebi, H. A.; Srikanthan, N.; Hayat, S.; Bragg, L. M.; Peterson, S. W.; Yang, I.; Sun, J. X.; Edwards, E. A.; Giesy, J. P.; Mangat, C. S.; Graber, T. E.; Delatolla, R.; Servos, M. R., An improved method for determining frequency of multiple variants of SARS-CoV-2 in wastewater using qPCR assays. Sci. Total Environ. 2023, 881, 163292. https://doi.org/10.1016/j.scitotenv.2023.163292
1015Diep, P.; Leo Shen, H.; Wiesner, J. A.; Mykytczuk, N.; Papangelakis, V.; Yakunin, A. F.; Mahadevan, R., Engineered nickel bioaccumulation in Escherichia coli by NikABCDE transporter and metallothionein overexpression. Eng. Life Sci. 2023. https://doi.org/10.1002/elsc.202200133
1016Chen, X.; Molenda, O.; Brown, C. T.; Toth, C. R. A.; Guo, S.; Luo, F.; Howe, J.; Nesbø, C. L.; He, C.; Montabana, E. A.; Cate, J. H. D.; Banfield, J. F.; Edwards, E. A., "Candidatus Nealsonbacteria" Are Likely Biomass Recycling Ectosymbionts of Methanogenic Archaea in a Stable Benzene-Degrading Enrichment Culture. Appl Environ Microbiol 2023, 89 (5), e0002523. https://doi.org/10.1128/aem.00025-23
1017Arellano-Saab, A.; Skarina, T.; Xu, Z.; McErlean, C. S. P.; Savchenko, A.; Lumba, S.; Stogios, P. J.; McCourt, P., Structural analysis of a hormone-bound Striga strigolactone receptor. Nat Plants 2023. https://doi.org/10.1038/s41477-023-01423-y
1018Siddiqui, J.; McGee, E. J. T.; Mhasavade, D.; Palagiri, S.; Balamurugan, V.; Diosady, L. L., Spray Encapsulation of Iron in Chitosan Biopolymer for Tea Fortification. J. Food Qual. 2023, 2023, 4127663. https://doi.org/10.1155/2023/4127663
1019Zak, M. T. E.; Papangelakis, V. G.; Allen, D. G., Biosorption of lanthanum by acidophile Euglena mutabilis biofilms and the role of extracellular polymeric substances. Algal Research 2023, 72, 103111. https://doi.org/https://doi.org/10.1016/j.algal.2023.103111
1020Vatandoust, A.; Krishnaswamy, K.; Li, Y. O.; Diosady, L., Triple fortification of salt with iron, iodine and zinc oxide using extrusion. J. Food Eng. 2023, 339, 111258. https://doi.org/https://doi.org/10.1016/j.jfoodeng.2022.111258
1021Gonçalves, M. C. P.; Cansian, A. B. M.; Tardioli, P. W.; Saville, B. A., Production of sugars from mixed hardwoods for use in the synthesis of sugar fatty acid esters catalyzed by immobilized-stabilized derivatives of Candida antarctica lipase B. Biofuels, Bioproducts and Biorefining 2023. https://doi.org/10.1002/bbb.2517
1022Venturelli, O. S.; Wang, H. H.; Estrela, S.; Huang, K. C.; Ledesma-Amaro, R.; Fedorec, A. J. H.; Stecher, B.; Lawson, C. E.; Zarrinpar, A.; Guo, C.-J.; Soyer, O. S., What is the key challenge in engineering microbiomes? Cell Systems 2023, 14 (2), 85-90. https://doi.org/https://doi.org/10.1016/j.cels.2023.01.002
1023Panda, S.; Zhou, J. F. J.; Feigis, M.; Harrison, E.; Ma, X.; Fung Kin Yuen, V.; Mahadevan, R.; Zhou, K., Engineering Escherichia coli to produce aromatic chemicals from ethylene glycol. Metab. Eng. 2023, 79, 38-48. https://doi.org/10.1016/j.ymben.2023.06.012
1024Suchana, S.; Edwards, E.; Mack, E. E.; Lomheim, L.; Melo, N.; Gavazza, S.; Passeport, E., Compatibility of polar organic chemical integrative sampler (POCIS) with compound specific isotope analysis (CSIA) of substituted chlorobenzenes. Sci. Total Environ. 2023, 906, 167628. https://doi.org/10.1016/j.scitotenv.2023.167628
1025Melo, N.; Araújo, S. P.; de Paula Queiroz Kraus, S.; Lomheim, L.; Quintero, P. B.; Mack, E. E.; Edwards, E. A.; Spain, J.; Gavazza, S., Strategies for Bioremediation of Soil from an Industrial Site Exposed to Chlorinated and Nitroaromatic Compounds. Groundwater Monit. Rem. 2023. https://doi.org/10.1111/gwmr.12596
1026Diep, P.; Kell, B.; Yakunin, A.; Hilfinger, A.; Mahadevan, R., Quantifying metal-binding specificity of CcNikZ-II from Clostridium carboxidivorans in the presence of competing metal ions. Anal. Biochem. 2023, 676, 115182. https://doi.org/10.1016/j.ab.2023.115182
1027Khusnutdinova, A. N.; Batyrova, K. A.; Brown, G.; Fedorchuk, T.; Chai, Y. S.; Skarina, T.; Flick, R.; Petit, A. P.; Savchenko, A.; Stogios, P.; Yakunin, A. F., Structural insights into hydrolytic defluorination of difluoroacetate by microbial fluoroacetate dehalogenases. FEBS J. 2023. https://doi.org/10.1111/febs.16903
1028Chen, J.; Liu, Y.; Mahadevan, R., Genetic Engineering of Acidithiobacillus ferridurans Using CRISPR Systems To Mitigate Toxic Release in Biomining. Environ Sci Technol 2023, 57 (33), 12315-12324. https://doi.org/10.1021/acs.est.3c02492
1029Landon-Brace, N.; Li, N. T.; McGuigan, A. P., Exploring New Dimensions of Tumor Heterogeneity: The Application of Single Cell Analysis to Organoid-Based 3D In Vitro Models. Adv Healthc Mater 2023, e2300903. https://doi.org/10.1002/adhm.202300903
1030Mathieu, Y.; Raji, O.; Bellemare, A.; Di Falco, M.; Nguyen, T. T. M.; Viborg, A. H.; Tsang, A.; Master, E.; Brumer, H., Functional characterization of fungal lytic polysaccharide monooxygenases for cellulose surface oxidation. Biotechnol Biofuels Bioprod 2023, 16 (1), 132. https://doi.org/10.1186/s13068-023-02383-3
1031Skrivergaard, S.; Young, J. F.; Sahebekhtiari, N.; Semper, C.; Venkatesan, M.; Savchenko, A.; Stogios, P. J.; Therkildsen, M.; Rasmussen, M. K., A simple and robust serum-free media for the proliferation of muscle cells. Food Res. Int. 2023, 172, 113194. https://doi.org/https://doi.org/10.1016/j.foodres.2023.113194
1032Saffarionpour, S.; Diosady, L. L., Preparation and characterization of an iron-β-cyclodextrin inclusion complex: factors influencing the host-guest interaction. Food Funct. 2023. https://doi.org/10.1039/d3fo00090g
1033Toth, C. R. A.; Molenda, O.; Nesbø, C.; Luo, F.; Devine, C.; Guo, S.; Chen, X.; Edwards, E. A., Metagenomic and Genomic Sequences from a Methanogenic Benzene-Degrading Consortium. Microbiol Resour Announc 2023, 12 (5), e0134222. https://doi.org/10.1128/mra.01342-22
1034Barghout, R. A.; Xu, Z.; Betala, S.; Mahadevan, R., Advances in generative modeling methods and datasets to design novel enzymes for renewable chemicals and fuels. Curr. Opin. Biotechnol. 2023, 84, 103007. https://doi.org/10.1016/j.copbio.2023.103007
1035Oyewole, A. O.; Diosady, L. L., Evaluating the potential of Hibiscus sabdariffa beverage to address the prevalence of iron deficiency in sub-Saharan Africa. LWT 2023, 188. https://doi.org/10.1016/j.lwt.2023.115433
1036Lin, J. D.; Stogios, P. J.; Abe, K. T.; Wang, A.; MacPherson, J.; Skarina, T.; Gingras, A. C.; Savchenko, A.; Ensminger, A. W., Functional diversification despite structural congruence in the HipBST toxin-antitoxin system of Legionella pneumophila. mBio 2023, 14 (5), e0151023. https://doi.org/10.1128/mbio.01510-23
1037Bordeleau, E.; Stogios, P. J.; Evdokimova, E.; Koteva, K.; Savchenko, A.; Wright, G. D., Mechanistic plasticity in ApmA enables aminoglycoside promiscuity for resistance. Nat. Chem. Biol. 2023. https://doi.org/10.1038/s41589-023-01483-3
1038Liu, J.; Edwards, E.; Van Hamme, J.; Manefield, M.; Higgins, C. P.; Blotevogel, J.; Liu, J.; Lee, L. S., Correspondence on "Defluorination of Perfluorooctanoic Acid (PFOA) and Perfluorooctane Sulfonate (PFOS) by Acidimicrobium sp. Strain A6". Environ Sci Technol 2023, 57 (48), 20440-20442. https://doi.org/10.1021/acs.est.3c06681
1039Bulka, O.; Webb, J.; Dworatzek, S.; Mahadevan, R.; Edwards, E. A., A Multifunctional Dehalobacter? Tandem Chloroform and Dichloromethane Degradation in a Mixed Microbial Culture. Environ Sci Technol 2023, 57 (48), 19912-19920. https://doi.org/10.1021/acs.est.3c06686
1040Raji, O.; Eijsink, V. G. H.; Master, E.; Forsberg, Z., Modularity impacts cellulose surface oxidation by a lytic polysaccharide monooxygenase from Streptomyces coelicolor. Cellulose 2023. https://doi.org/10.1007/s10570-023-05551-8
1041Dahiya, D.; Koitto, T.; Kutvonen, K.; Wang, Y.; Haddad Momeni, M.; de Ruijter, S.; Master, E. R., Fungal loosenin-like proteins boost the cellulolytic enzyme conversion of pretreated wood fiber and cellulosic pulps. Bioresour. Technol. 2023, 394, 130188. https://doi.org/10.1016/j.biortech.2023.130188
1042Robbins, B.; Gaona, A.; Tavasoli, A.; Bergerson, J. A.; Saville, B. A.; MacLean, H. L., Life cycle environmental performance of methanol production through photocatalytic dry methane reforming. J. CO2 Util. 2024, 79. https://doi.org/10.1016/j.jcou.2023.102638
1043Sharan, A. A.; Bellemare, A.; DiFalco, M.; Tsang, A.; Vuong, T. V.; Edwards, E. A.; Master, E. R., Functional screening pipeline to uncover laccase-like multicopper oxidase enzymes that transform industrial lignins. Bioresour. Technol. 2024, 393, 130084. https://doi.org/10.1016/j.biortech.2023.130084
1044Nesbø, C. L.; Fitamo, T. M.; Lee, H.; Edwards, E. A., Metagenomes and metagenome-assembled genomes from a sequentially fed anaerobic digester treating solid organic municipal waste. Microbiol Resour Announc 2024, 13 (1), e0091923. https://doi.org/10.1128/mra.00919-23
1045Potter, N.; Latour, S.; Wong, E. C. N.; Winnik, M. A.; Jackson, H. W.; McGuigan, A. P.; Nitz, M., Design Parameters for a Mass Cytometry Detectable HaloTag Ligand. Bioconjugate Chemistry 2024, 35 (1), 80-91. https://doi.org/10.1021/acs.bioconjchem.3c00434
1046Hiltunen, S.; Sapkota, J.; Ioannou, E.; Haddad Momeni, M.; Master, E.; Ristolainen, M., Comparative assessment of chemical and biochemical approaches for the activation of lignocellulosic materials and emerging opportunities for expansin-related proteins. Cellulose 2024, 31 (1), 147-168. https://doi.org/10.1007/s10570-023-05637-3
1047Chan, Y. K. K.; Sodhi, R. N. S.; Cheng, Y.-L.; Diosady, L. L., Characterization of granular micronutrient premixes for food fortification. J. Food Process Eng. 2024, 47 (2), e14543. https://doi.org/https://doi.org/10.1111/jfpe.14543
1048Leshuk, T. M. C.; Young, Z. W.; Wilson, B.; Chen, Z. Q.; Smith, D. A.; Lazaris, G.; Gopanchuk, M.; McLay, S.; Seelemann, C. A.; Paradis, T.; Bekele, A.; Guest, R.; Massara, H.; White, T.; Zubot, W.; Letinski, D. J.; Redman, A. D.; Allen, D. G.; Gu, F., A Light Touch: Solar Photocatalysis Detoxifies Oil Sands Process-Affected Waters Prior to Significant Treatment of Naphthenic Acids. ACS ES&T Water 2024. https://doi.org/10.1021/acsestwater.3c00616
1049Feng, X.; Hong, S.; Zhao, H.; Vuong, T. V.; Master, E. R., Biocatalytic cascade to polysaccharide amination. Biotechnol Biofuels Bioprod 2024, 17 (1), 34. https://doi.org/10.1186/s13068-024-02477-6
1050Syriste, L.; Patel, D. T.; Stogios, P. J.; Skarina, T.; Patel, D.; Savchenko, A., An acetyltransferase effector conserved across Legionella species targets the eukaryotic eIF3 complex to modulate protein translation. mBio 2024, 15 (3), e0322123. https://doi.org/10.1128/mbio.03221-23
1051Kastenhofer, J.; Spadiut, O.; Papangelakis, V. G.; Allen, D. G., Roles of pH and phosphate in rare earth element biosorption with living acidophilic microalgae. Appl Microbiol Biotechnol 2024, 108 (1), 262. https://doi.org/10.1007/s00253-024-13068-8
1052Pattisapu, J. V.; Manda, V. V.; Kottakki, M. N. R.; Kajana, P. M.; Kancherla, V.; Bhaganagarapu, H. R.; Veerappan, V.; Ediga, A.; Mannar, V.; Diosady, L.; Oakley, G. P., Jr., Folic Acid-Fortified Iodized Salt and Serum Folate Levels in Reproductive-Aged Women of Rural India: A Nonrandomized Controlled Trial. JAMA Netw Open 2024, 7 (3), e241777. https://doi.org/10.1001/jamanetworkopen.2024.1777
1053Zhao, H.; Karppi, J.; Mototsune, O.; Poshina, D.; Svartström, J.; Nguyen, T. T. M.; Vo, T. M.; Tsang, A.; Master, E.; Tenkanen, M., Substrate specificity mapping of fungal CAZy AA3_2 oxidoreductases. Biotechnol Biofuels Bioprod 2024, 17 (1), 47. https://doi.org/10.1186/s13068-024-02491-8
1054Diep, P.; Stogios, P. J.; Evdokimova, E.; Savchenko, A.; Mahadevan, R.; Yakunin, A. F., Ni(II)-binding affinity of CcNikZ-II and its homologs: the role of the HH-prong and variable loop revealed by structural and mutational studies. FEBS J. 2024. https://doi.org/10.1111/febs.17125
1055Sun, J.; Yang, M. I.; Peng, J.; Khan, I.; Lopez, J. J.; Chan, R.; Edwards, E. A.; Peng, H., Underestimation of SARS-CoV-2 in wastewater due to single or double mutations in the N1 qPCR probe binding region. Water Res X 2024, 22, 100221. https://doi.org/10.1016/j.wroa.2024.100221
1056Garieri, T.; Allen, D. G.; Gao, W.; Liao, B., A review of emerging membrane-based microalgal-bacterial processes for wastewater treatment: Process configurations, biological and membrane performance, and perspectives. Sci. Total Environ. 2024, 927, 172141. https://doi.org/10.1016/j.scitotenv.2024.172141
1057Cadavid, J. L.; Li, N. T.; McGuigan, A. P., Bridging systems biology and tissue engineering: Unleashing the full potential of complex 3D in vitro tissue models of disease. Biophys Rev (Melville) 2024, 5 (2), 021301. https://doi.org/10.1063/5.0179125

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