2021
- J. Chen, Y. Liu, P. Diep, and R. Mahadevan, “Genomic analysis of a newly isolated acidithiobacillus ferridurans jags strain reveals its adaptation to acid mine drainage,” Minerals, vol. 11, iss. 1, p. 74, 2021.
[Bibtex]@article{RN1243_2021, author = {Chen, Jinjin and Liu, Yilan and Diep, Patrick and Mahadevan, Radhakrishnan}, title = {Genomic Analysis of a Newly Isolated Acidithiobacillus ferridurans JAGS Strain Reveals Its Adaptation to Acid Mine Drainage}, journal = {Minerals}, volume = {11}, number = {1}, pages = {74}, ISSN = {2075-163X}, url = {https://www.mdpi.com/2075-163X/11/1/74}, year = {2021}, type = {Journal Article} } -
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S. Latour and A. P. McGuigan, “Easy and robust micropatterning using fibrinogen anchors,” The journal of cell biology, vol. 220, iss. 2, 2021.
[Bibtex]@article{RN1236_2021, author = {Latour, S. and McGuigan, A. P.}, title = {Easy and robust micropatterning using fibrinogen anchors}, journal = {The Journal of cell biology}, volume = {220}, number = {2}, DOI = {10.1083/jcb.202012105}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85099773902&doi=10.1083%2fjcb.202012105&partnerID=40&md5=552b916065b21eb3a04028ecd3871a69}, year = {2021}, type = {Journal Article} } - M. Mejdani, K. Haddadi, C. Pham, and R. Mahadevan, “Sars-cov-2 receptor binding mutations and antibody mediated immunity,” Biorxiv, p. 2021.01.25.427846, 2021.
[Bibtex]@article{RN1242_2021, author = {Mejdani, Marios and Haddadi, Kiana and Pham, Chester and Mahadevan, Radhakrishnan}, title = {SARS-CoV-2 receptor binding mutations and antibody mediated immunity}, journal = {bioRxiv}, pages = {2021.01.25.427846}, DOI = {10.1101/2021.01.25.427846}, url = {http://biorxiv.org/content/early/2021/01/25/2021.01.25.427846.abstract}, year = {2021}, type = {Journal Article} } - A. V. Pandit, E. Harrison, and R. Mahadevan, “Engineering escherichia coli for the utilization of ethylene glycol,” Microbial cell factories, vol. 20, iss. 1, p. 22, 2021.
[Bibtex]@article{RN1241_2021, author = {Pandit, Aditya Vikram and Harrison, Emma and Mahadevan, Radhakrishnan}, title = {Engineering Escherichia coli for the utilization of ethylene glycol}, journal = {Microbial Cell Factories}, volume = {20}, number = {1}, pages = {22}, ISSN = {1475-2859}, DOI = {10.1186/s12934-021-01509-2}, url = {https://doi.org/10.1186/s12934-021-01509-2}, year = {2021}, type = {Journal Article} } - C. Semper, N. Watanabe, and A. Savchenko, “Structural characterization of nonstructural protein 1 from sars-cov-2,” Iscience, vol. 24, iss. 1, 2021.
[Bibtex]@article{RN1238_2021, author = {Semper, C. and Watanabe, N. and Savchenko, A.}, title = {Structural characterization of nonstructural protein 1 from SARS-CoV-2}, journal = {iScience}, volume = {24}, number = {1}, DOI = {10.1016/j.isci.2020.101903}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85098213312&doi=10.1016%2fj.isci.2020.101903&partnerID=40&md5=83d1f40a904830b78d14abc5c7af330c}, year = {2021}, type = {Journal Article} } - R. Yan, W. Wang, T. V. Vuong, Y. Xiu, T. Skarina, R. Di Leo, P. Gatenholm, G. Toriz, M. Tenkanen, P. J. Stogios, and E. R. Master, “Structural characterization of the family gh115 α-glucuronidase from amphibacillus xylanus yields insight into its coordinated action with α-arabinofuranosidases,” New biotechnology, vol. 62, pp. 49-56, 2021.
[Bibtex]@article{RN1240_2021, author = {Yan, Ruoyu and Wang, Weijun and Vuong, Thu V. and Xiu, Yang and Skarina, Tatiana and Di Leo, Rosa and Gatenholm, Paul and Toriz, Guillermo and Tenkanen, Maija and Stogios, Peter J. and Master, Emma R.}, title = {Structural characterization of the family GH115 α-glucuronidase from Amphibacillus xylanus yields insight into its coordinated action with α-arabinofuranosidases}, journal = {New Biotechnology}, volume = {62}, pages = {49-56}, ISSN = {1871-6784}, DOI = {https://doi.org/10.1016/j.nbt.2021.01.005}, url = {http://www.sciencedirect.com/science/article/pii/S1871678421000078}, year = {2021}, type = {Journal Article} }
2020
- A. J. Al-Fahad, M. B. Al-Fageeh, N. M. Kharbatia, S. Sioud, and R. Mahadevan, “Metabolically engineered recombinant saccharomyces cerevisiae for the production of 2-deoxy-scyllo-inosose (2-doi),” Metabolic engineering communications, vol. 11, p. e00134, 2020.
[Bibtex]@article{RN1221_2020, author = {Al-Fahad, Ahmed J. and Al-Fageeh, Mohamed B. and Kharbatia, Najeh M. and Sioud, Salim and Mahadevan, Radhakrishnan}, title = {Metabolically engineered recombinant Saccharomyces cerevisiae for the production of 2-Deoxy-scyllo-inosose (2-DOI)}, journal = {Metabolic Engineering Communications}, volume = {11}, pages = {e00134}, ISSN = {2214-0301}, DOI = {https://doi.org/10.1016/j.mec.2020.e00134}, url = {http://www.sciencedirect.com/science/article/pii/S2214030119300483}, year = {2020}, type = {Journal Article} } - M. Arefmanesh, T. V. Vuong, J. K. Mobley, M. Alinejad, E. R. Master, and M. Nejad, “Bromide-based ionic liquid treatment of hardwood organosolv lignin yielded a more reactive biobased polyol,” Industrial & engineering chemistry research, 2020.
[Bibtex]@article{RN1229_2020, author = {Arefmanesh, Maryam and Vuong, Thu V. and Mobley, Justin K. and Alinejad, Mona and Master, Emma R. and Nejad, Mojgan}, title = {Bromide-Based Ionic Liquid Treatment of Hardwood Organosolv Lignin Yielded a More Reactive Biobased Polyol}, journal = {Industrial & Engineering Chemistry Research}, ISSN = {0888-5885}, DOI = {10.1021/acs.iecr.0c03718}, url = {https://doi.org/10.1021/acs.iecr.0c03718}, year = {2020}, type = {Journal Article} } - R. Bargiela, K. Lanthaler, C. Potter, M. Ferrer, A. Yakunin, B. Paizs, P. Golyshin, and O. Golyshina, “Proteome cold-shock response in the extremely acidophilic archaeon, cuniculiplasma divulgatum,” Microorganisms, vol. 8, p. 759, 2020.
[Bibtex]@article{RN1231_2020, author = {Bargiela, Rafael and Lanthaler, Karin and Potter, Colin and Ferrer, Manuel and Yakunin, Alexander and Paizs, Bela and Golyshin, Peter and Golyshina, Olga}, title = {Proteome Cold-Shock Response in the Extremely Acidophilic Archaeon, Cuniculiplasma divulgatum}, journal = {Microorganisms}, volume = {8}, pages = {759}, DOI = {10.3390/microorganisms8050759}, year = {2020}, type = {Journal Article} } - K. A. Batyrova, A. N. Khusnutdinova, P. H. Wang, R. Di Leo, R. Flick, E. A. Edwards, A. Savchenko, and A. F. Yakunin, “Biocatalytic in vitro and in vivo fmn prenylation and (de)carboxylase activation,” Acs chemical biology, vol. 15, iss. 7, pp. 1874-1882, 2020.
[Bibtex]@article{RN1209_2020, author = {Batyrova, K. A. and Khusnutdinova, A. N. and Wang, P. H. and Di Leo, R. and Flick, R. and Edwards, E. A. and Savchenko, A. and Yakunin, A. F.}, title = {Biocatalytic in Vitro and in Vivo FMN Prenylation and (De)carboxylase Activation}, journal = {ACS Chemical Biology}, volume = {15}, number = {7}, pages = {1874-1882}, DOI = {10.1021/acschembio.0c00136}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85088255567&doi=10.1021%2facschembio.0c00136&partnerID=40&md5=c74f6f9a4cf62144f7bbf1469286adee}, year = {2020}, type = {Journal Article} } - A. Biz and R. Mahadevan, “Overcoming challenges in expressing iron–sulfur enzymes in yeast,” Trends in biotechnology, 2020.
[Bibtex]@article{RN1244_2020, author = {Biz, Alessandra and Mahadevan, Radhakrishnan}, title = {Overcoming Challenges in Expressing Iron–Sulfur Enzymes in Yeast}, journal = {Trends in Biotechnology}, ISSN = {0167-7799}, DOI = {https://doi.org/10.1016/j.tibtech.2020.11.005}, url = {http://www.sciencedirect.com/science/article/pii/S0167779920303000}, year = {2020}, type = {Journal Article} } - T. Caplan, Á. Lorente-Macías, P. J. Stogios, E. Evdokimova, S. Hyde, M. A. Wellington, S. Liston, K. R. Iyer, E. Puumala, T. Shekhar-Guturja, N. Robbins, A. Savchenko, D. J. Krysan, L. Whitesell, W. J. Zuercher, and L. E. Cowen, “Overcoming fungal echinocandin resistance through inhibition of the non-essential stress kinase yck2,” Cell chemical biology, vol. 27, iss. 3, p. 269-282.e5, 2020.
[Bibtex]@article{RN1208_2020, author = {Caplan, Tavia and Lorente-Macías, Álvaro and Stogios, Peter J. and Evdokimova, Elena and Hyde, Sabrina and Wellington, Melanie A. and Liston, Sean and Iyer, Kali R. and Puumala, Emily and Shekhar-Guturja, Tanvi and Robbins, Nicole and Savchenko, Alexei and Krysan, Damian J. and Whitesell, Luke and Zuercher, William J. and Cowen, Leah E.}, title = {Overcoming Fungal Echinocandin Resistance through Inhibition of the Non-essential Stress Kinase Yck2}, journal = {Cell Chemical Biology}, volume = {27}, number = {3}, pages = {269-282.e5}, ISSN = {2451-9456}, DOI = {https://doi.org/10.1016/j.chembiol.2019.12.008}, url = {http://www.sciencedirect.com/science/article/pii/S2451945619304258}, year = {2020}, type = {Journal Article} } - Y. K. K. Chan, G. Gurumeenakshi, N. Varadharaju, Y. L. Cheng, and L. L. Diosady, “Debittering moringa oleifera (lam.) leaves in fortified south indian instant soup,” Chemosensory perception, 2020.
[Bibtex]@article{RN1213_2020, author = {Chan, Y. K. K. and Gurumeenakshi, G. and Varadharaju, N. and Cheng, Y. L. and Diosady, L. L.}, title = {Debittering Moringa oleifera (Lam.) Leaves in Fortified South Indian Instant Soup}, journal = {Chemosensory Perception}, DOI = {10.1007/s12078-020-09280-1}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85085469477&doi=10.1007%2fs12078-020-09280-1&partnerID=40&md5=e1a563302a9d6ebb6a57d3859ee0b6b1}, year = {2020}, type = {Journal Article} } - J. Chen, Y. Liu, P. Diep, A. Jo, C. Nesbø, E. Edwards, V. Papangelakis, and R. Mahadevan, “Complete genome sequence of acidithiobacillus ferridurans jags, isolated from acidic mine drainage,” Microbiology resource announcements, vol. 9, iss. 13, 2020.
[Bibtex]@article{RN1204_2020, author = {Chen, J. and Liu, Y. and Diep, P. and Jo, A. and Nesbø, C. and Edwards, E. and Papangelakis, V. and Mahadevan, R.}, title = {Complete Genome Sequence of Acidithiobacillus ferridurans JAGS, Isolated from Acidic Mine Drainage}, journal = {Microbiology Resource Announcements}, volume = {9}, number = {13}, DOI = {10.1128/MRA.00033-20}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85082437451&doi=10.1128%2fMRA.00033-20&partnerID=40&md5=5ee14e93353875d6aeacfa1e724db15a}, year = {2020}, type = {Journal Article} } - Z. Chen, X. Tang, W. Qiao, L. A. Puentes Jácome, E. A. Edwards, Y. He, and J. Xu, “Nanoscale zero-valent iron reduction coupled with anaerobic dechlorination to degrade hexachlorocyclohexane isomers in historically contaminated soil,” Journal of hazardous materials, vol. 400, 2020.
[Bibtex]@article{RN1210_2020, author = {Chen, Z. and Tang, X. and Qiao, W. and Puentes Jácome, L. A. and Edwards, E. A. and He, Y. and Xu, J.}, title = {Nanoscale zero-valent iron reduction coupled with anaerobic dechlorination to degrade hexachlorocyclohexane isomers in historically contaminated soil}, journal = {Journal of Hazardous Materials}, volume = {400}, DOI = {10.1016/j.jhazmat.2020.123298}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85087015399&doi=10.1016%2fj.jhazmat.2020.123298&partnerID=40&md5=55a9ae64489a348dc53c7266b8b1b11e}, year = {2020}, type = {Journal Article} } - S. L. Cheung, D. G. Allen, and S. M. Short, “Specific quantification of scenedesmus obliquus and chlorella vulgaris in mixed-species algal biofilms,” Bioresource technology, vol. 295, 2020.
[Bibtex]@article{RN1185_2020, author = {Cheung, S. L. and Allen, D. G. and Short, S. M.}, title = {Specific quantification of Scenedesmus obliquus and Chlorella vulgaris in mixed-species algal biofilms}, journal = {Bioresource Technology}, volume = {295}, DOI = {10.1016/j.biortech.2019.122251}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85073566727&doi=10.1016%2fj.biortech.2019.122251&partnerID=40&md5=27fffdd50c552d0c0f6e211d641066dd}, year = {2020}, type = {Journal Article} } - Z. Choolaei, R. Flick, A. N. Khusnutdinova, E. A. Edwards, and A. F. Yakunin, “Lignin-oxidizing activity of bacterial laccases characterized using soluble substrates and polymeric lignin,” Journal of biotechnology, 2020.
[Bibtex]@article{RN1233_2020, author = {Choolaei, Z. and Flick, R. and Khusnutdinova, A. N. and Edwards, E. A. and Yakunin, A. F.}, title = {Lignin-oxidizing activity of bacterial laccases characterized using soluble substrates and polymeric lignin}, journal = {Journal of Biotechnology}, DOI = {10.1016/j.jbiotec.2020.11.007}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85096385162&doi=10.1016%2fj.jbiotec.2020.11.007&partnerID=40&md5=c1b9b090df0cda98cc2b641eb90cabd2}, year = {2020}, type = {Journal Article} } - R. Choudhary and R. Mahadevan, “Toward a systematic design of smart probiotics,” Current opinion in biotechnology, vol. 64, pp. 199-209, 2020.
[Bibtex]@article{RN1218_2020, author = {Choudhary, Ruhi and Mahadevan, Radhakrishnan}, title = {Toward a systematic design of smart probiotics}, journal = {Current Opinion in Biotechnology}, volume = {64}, pages = {199-209}, ISSN = {0958-1669}, DOI = {https://doi.org/10.1016/j.copbio.2020.05.003}, url = {http://www.sciencedirect.com/science/article/pii/S0958166920300586}, year = {2020}, type = {Journal Article} } - K. Correia and R. Mahadevan, “Pan-genome-scale network reconstruction: harnessing phylogenomics increases the quantity and quality of metabolic models,” Biotechnology journal, vol. 15, iss. 10, p. 1900519, 2020.
[Bibtex]@article{RN1230_2020, author = {Correia, Kevin and Mahadevan, Radhakrishnan}, title = {Pan-Genome-Scale Network Reconstruction: Harnessing Phylogenomics Increases the Quantity and Quality of Metabolic Models}, journal = {Biotechnology Journal}, volume = {15}, number = {10}, pages = {1900519}, ISSN = {1860-6768}, DOI = {10.1002/biot.201900519}, url = {https://doi.org/10.1002/biot.201900519}, year = {2020}, type = {Journal Article} } - E. D’Arcangelo, N. C. Wu, J. L. Cadavid, and A. P. McGuigan, “The life cycle of cancer-associated fibroblasts within the tumour stroma and its importance in disease outcome,” British journal of cancer, vol. 122, iss. 7, pp. 931-942, 2020.
[Bibtex]@article{RN1205_2020, author = {D’Arcangelo, E. and Wu, N. C. and Cadavid, J. L. and McGuigan, A. P.}, title = {The life cycle of cancer-associated fibroblasts within the tumour stroma and its importance in disease outcome}, journal = {British Journal of Cancer}, volume = {122}, number = {7}, pages = {931-942}, DOI = {10.1038/s41416-019-0705-1}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85078682898&doi=10.1038%2fs41416-019-0705-1&partnerID=40&md5=1e22292c7b6f041ebe61e356c10e0d28}, year = {2020}, type = {Journal Article} } - E. D’Arcangelo, N. C. Wu, T. Chen, A. Shahaj, J. L. Cadavid, L. Huang, L. Ailles, and A. P. McGuigan, “Gels for live analysis of compartmentalized environments (glance): a tissue model to probe tumour phenotypes at tumour-stroma interfaces,” Biomaterials, vol. 228, 2020.
[Bibtex]@article{RN1186_2020, author = {D'Arcangelo, E. and Wu, N. C. and Chen, T. and Shahaj, A. and Cadavid, J. L. and Huang, L. and Ailles, L. and McGuigan, A. P.}, title = {Gels for Live Analysis of Compartmentalized Environments (GLAnCE): A tissue model to probe tumour phenotypes at tumour-stroma interfaces}, journal = {Biomaterials}, volume = {228}, DOI = {10.1016/j.biomaterials.2019.119572}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85074260910&doi=10.1016%2fj.biomaterials.2019.119572&partnerID=40&md5=1464d7e5acf714536491de57567e9aa3}, year = {2020}, type = {Journal Article} } - T. Dean, N. T. Li, J. L. Cadavid, L. Ailles, and A. P. McGuigan, “A tracer culture invasion assay to probe the impact of cancer associated fibroblasts on head and neck squamous cell carcinoma cell invasiveness,” Biomaterials science, vol. 8, iss. 11, pp. 3078-3094, 2020.
[Bibtex]@article{RN1212_2020, author = {Dean, T. and Li, N. T. and Cadavid, J. L. and Ailles, L. and McGuigan, A. P.}, title = {A TRACER culture invasion assay to probe the impact of cancer associated fibroblasts on head and neck squamous cell carcinoma cell invasiveness}, journal = {Biomaterials science}, volume = {8}, number = {11}, pages = {3078-3094}, DOI = {10.1039/c9bm02017a}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85085904285&doi=10.1039%2fc9bm02017a&partnerID=40&md5=94f0253f35215e08bb1ddd76bc7417cf}, year = {2020}, type = {Journal Article} } - P. Diep, R. Mahadevan, and A. F. Yakunin, “A microplate screen to estimate metal-binding affinities of metalloproteins,” Analytical biochemistry, p. 113836, 2020.
[Bibtex]@article{RN1219_2020, author = {Diep, Patrick and Mahadevan, Radhakrishnan and Yakunin, Alexander F.}, title = {A microplate screen to estimate metal-binding affinities of metalloproteins}, journal = {Analytical Biochemistry}, pages = {113836}, ISSN = {0003-2697}, DOI = {https://doi.org/10.1016/j.ab.2020.113836}, url = {http://www.sciencedirect.com/science/article/pii/S0003269720303687}, year = {2020}, type = {Journal Article} } - E. A. Edwards, “Electron balances for nutrition and health,” J nutr, 2020.
[Bibtex]@article{RN1239_2020, author = {Edwards, E. A.}, title = {Electron Balances for Nutrition and Health}, journal = {J Nutr}, ISSN = {0022-3166}, DOI = {10.1093/jn/nxaa372}, year = {2020}, type = {Journal Article} } - T. P. Fedorchuk, A. N. Khusnutdinova, E. Evdokimova, R. Flick, R. Di Leo, P. Stogios, A. Savchenko, and A. F. Yakunin, “One-pot biocatalytic transformation of adipic acid to 6-aminocaproic acid and 1,6-hexamethylenediamine using carboxylic acid reductases and transaminases,” Journal of the american chemical society, vol. 142, iss. 2, pp. 1038-1048, 2020.
[Bibtex]@article{RN1189_2020, author = {Fedorchuk, T. P. and Khusnutdinova, A. N. and Evdokimova, E. and Flick, R. and Di Leo, R. and Stogios, P. and Savchenko, A. and Yakunin, A. F.}, title = {One-Pot Biocatalytic Transformation of Adipic Acid to 6-Aminocaproic Acid and 1,6-Hexamethylenediamine Using Carboxylic Acid Reductases and Transaminases}, journal = {Journal of the American Chemical Society}, volume = {142}, number = {2}, pages = {1038-1048}, DOI = {10.1021/jacs.9b11761}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85077937890&doi=10.1021%2fjacs.9b11761&partnerID=40&md5=cc7e2fde21109bc5731f2958d0529f8a}, year = {2020}, type = {Journal Article} } - S. J. Hersch, N. Watanabe, M. S. Stietz, K. Manera, F. Kamal, B. Burkinshaw, L. Lam, A. Pun, M. Li, A. Savchenko, and T. G. Dong, “Envelope stress responses defend against type six secretion system attacks independently of immunity proteins,” Nat microbiol, 2020.
[Bibtex]@article{RN1190_2020, author = {Hersch, S. J. and Watanabe, N. and Stietz, M. S. and Manera, K. and Kamal, F. and Burkinshaw, B. and Lam, L. and Pun, A. and Li, M. and Savchenko, A. and Dong, T. G.}, title = {Envelope stress responses defend against type six secretion system attacks independently of immunity proteins}, journal = {Nat Microbiol}, ISSN = {2058-5276}, DOI = {10.1038/s41564-020-0672-6}, year = {2020}, type = {Journal Article} } - K. Kanger, N. G. H. Guilford, H. Lee, C. L. Nesbo, J. Truu, and E. A. Edwards, “Antibiotic resistome and microbial community structure during anaerobic co-digestion of food waste, paper and cardboard,” Fems microbiol ecol, vol. 96, iss. 2, 2020.
[Bibtex]@article{RN1195_2020, author = {Kanger, K. and Guilford, N. G. H. and Lee, H. and Nesbo, C. L. and Truu, J. and Edwards, E. A.}, title = {Antibiotic resistome and microbial community structure during anaerobic co-digestion of food waste, paper and cardboard}, journal = {FEMS Microbiol Ecol}, volume = {96}, number = {2}, ISSN = {0168-6496}, DOI = {10.1093/femsec/fiaa006}, year = {2020}, type = {Journal Article} } - J. Karppi, H. Zhao, S. L. Chong, A. E. Koistinen, M. Tenkanen, and E. Master, “Quantitative comparison of pyranose dehydrogenase action on diverse xylooligosaccharides,” Frontiers in chemistry, vol. 8, 2020.
[Bibtex]@article{RN1202_2020, author = {Karppi, J. and Zhao, H. and Chong, S. L. and Koistinen, A. E. and Tenkanen, M. and Master, E.}, title = {Quantitative Comparison of Pyranose Dehydrogenase Action on Diverse Xylooligosaccharides}, journal = {Frontiers in Chemistry}, volume = {8}, DOI = {10.3389/fchem.2020.00011}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85079494630&doi=10.3389%2ffchem.2020.00011&partnerID=40&md5=f19ee4c21bc5e5923ac108f758f4fc5a}, year = {2020}, type = {Journal Article} } - M. Khaksar Toroghi, W. Cluett, and R. Mahadevan, “A personalized multi-scale modelling framework for dose selection in precision medicine,” Industrial & engineering chemistry research, 2020.
[Bibtex]@article{RN1206_2020, author = {Khaksar Toroghi, Masood and Cluett, W. and Mahadevan, Radhakrishnan}, title = {A Personalized Multi-scale Modelling Framework for Dose Selection in Precision Medicine}, journal = {Industrial & Engineering Chemistry Research}, ISSN = {0888-5885}, DOI = {10.1021/acs.iecr.0c01070}, url = {https://doi.org/10.1021/acs.iecr.0c01070}, year = {2020}, type = {Journal Article} } - C. H. Lau, E. N. DeJong, F. Dussault, C. Carrillo, P. J. Stogios, A. Savchenko, and E. Topp, “A penicillin-binding protein that can promote advanced-generation cephalosporin resistance and genome adaptation in the opportunistic pathogen pseudomonas aeruginosa,” International journal of antimicrobial agents, vol. 55, iss. 3, p. 105896, 2020.
[Bibtex]@article{RN1207_2020, author = {Lau, Calvin Ho-Fung and DeJong, Erica N. and Dussault, Forest and Carrillo, Catherine and Stogios, Peter J. and Savchenko, Alexei and Topp, Edward}, title = {A penicillin-binding protein that can promote advanced-generation cephalosporin resistance and genome adaptation in the opportunistic pathogen Pseudomonas aeruginosa}, journal = {International Journal of Antimicrobial Agents}, volume = {55}, number = {3}, pages = {105896}, ISSN = {0924-8579}, DOI = {https://doi.org/10.1016/j.ijantimicag.2020.105896}, url = {http://www.sciencedirect.com/science/article/pii/S0924857920300352}, year = {2020}, type = {Journal Article} } - Y. Li, N. Khuu, E. Prince, H. Tao, N. Zhang, Z. Chen, A. Gevorkian, A. P. McGuigan, and E. Kumacheva, “Matrix stiffness-regulated growth of breast tumor spheroids and their response to chemotherapy,” Biomacromolecules, 2020.
[Bibtex]@article{RN1235_2020, author = {Li, Yunfeng and Khuu, Nancy and Prince, Elisabeth and Tao, Huachen and Zhang, Ningtong and Chen, Zhengkun and Gevorkian, Albert and McGuigan, Alison P. and Kumacheva, Eugenia}, title = {Matrix Stiffness-Regulated Growth of Breast Tumor Spheroids and Their Response to Chemotherapy}, journal = {Biomacromolecules}, ISSN = {1525-7797}, DOI = {10.1021/acs.biomac.0c01287}, url = {https://doi.org/10.1021/acs.biomac.0c01287}, year = {2020}, type = {Journal Article} } - C. Lieven, M. E. Beber, B. G. Olivier, F. T. Bergmann, M. Ataman, P. Babaei, J. A. Bartell, L. M. Blank, S. Chauhan, K. Correia, C. Diener, A. Drager, B. E. Ebert, J. N. Edirisinghe, J. P. Faria, A. M. Feist, G. Fengos, R. M. T. Fleming, B. Garcia-Jimenez, V. Hatzimanikatis, W. van Helvoirt, C. S. Henry, H. Hermjakob, M. J. Herrgard, A. Kaafarani, H. U. Kim, Z. King, S. Klamt, E. Klipp, J. J. Koehorst, M. Konig, M. Lakshmanan, D. Y. Lee, S. Y. Lee, S. Lee, N. E. Lewis, F. Liu, H. Ma, D. Machado, R. Mahadevan, P. Maia, A. Mardinoglu, G. L. Medlock, J. M. Monk, J. Nielsen, L. K. Nielsen, J. Nogales, I. Nookaew, B. O. Palsson, J. A. Papin, K. R. Patil, M. Poolman, N. D. Price, O. Resendis-Antonio, A. Richelle, I. Rocha, B. J. Sanchez, P. J. Schaap, R. S. Malik Sheriff, S. Shoaie, N. Sonnenschein, B. Teusink, P. Vilaca, J. O. Vik, J. A. H. Wodke, J. C. Xavier, Q. Yuan, M. Zakhartsev, and C. Zhang, “Memote for standardized genome-scale metabolic model testing,” Nat biotechnol, 2020.
[Bibtex]@article{RN1198_2020, author = {Lieven, C. and Beber, M. E. and Olivier, B. G. and Bergmann, F. T. and Ataman, M. and Babaei, P. and Bartell, J. A. and Blank, L. M. and Chauhan, S. and Correia, K. and Diener, C. and Drager, A. and Ebert, B. E. and Edirisinghe, J. N. and Faria, J. P. and Feist, A. M. and Fengos, G. and Fleming, R. M. T. and Garcia-Jimenez, B. and Hatzimanikatis, V. and van Helvoirt, W. and Henry, C. S. and Hermjakob, H. and Herrgard, M. J. and Kaafarani, A. and Kim, H. U. and King, Z. and Klamt, S. and Klipp, E. and Koehorst, J. J. and Konig, M. and Lakshmanan, M. and Lee, D. Y. and Lee, S. Y. and Lee, S. and Lewis, N. E. and Liu, F. and Ma, H. and Machado, D. and Mahadevan, R. and Maia, P. and Mardinoglu, A. and Medlock, G. L. and Monk, J. M. and Nielsen, J. and Nielsen, L. K. and Nogales, J. and Nookaew, I. and Palsson, B. O. and Papin, J. A. and Patil, K. R. and Poolman, M. and Price, N. D. and Resendis-Antonio, O. and Richelle, A. and Rocha, I. and Sanchez, B. J. and Schaap, P. J. and Malik Sheriff, R. S. and Shoaie, S. and Sonnenschein, N. and Teusink, B. and Vilaca, P. and Vik, J. O. and Wodke, J. A. H. and Xavier, J. C. and Yuan, Q. and Zakhartsev, M. and Zhang, C.}, title = {MEMOTE for standardized genome-scale metabolic model testing}, journal = {Nat Biotechnol}, ISSN = {1087-0156}, DOI = {10.1038/s41587-020-0446-y}, year = {2020}, type = {Journal Article} } - Y. Liu, J. Chen, D. Crisante, J. M. Jaramillo Lopez, and R. Mahadevan, “Dynamic cell programming with quorum sensing-controlled crispri circuit,” Acs synthetic biology, vol. 9, iss. 6, pp. 1284-1291, 2020.
[Bibtex]@article{RN1220_2020, author = {Liu, Yilan and Chen, Jinjin and Crisante, David and Jaramillo Lopez, Jhoselyn Marisol and Mahadevan, Radhakrishnan}, title = {Dynamic Cell Programming with Quorum Sensing-Controlled CRISPRi Circuit}, journal = {ACS Synthetic Biology}, volume = {9}, number = {6}, pages = {1284-1291}, DOI = {10.1021/acssynbio.0c00148}, url = {https://doi.org/10.1021/acssynbio.0c00148}, year = {2020}, type = {Journal Article} } - Y. Liu, J. Chen, A. N. Khusnutdinova, K. Correia, P. Diep, K. A. Batyrova, K. Nemr, R. Flick, P. Stogios, A. F. Yakunin, and R. Mahadevan, “A novel c-terminal degron identified in bacterial aldehyde decarbonylases using directed evolution,” Biotechnology for biofuels, vol. 13, iss. 1, 2020.
[Bibtex]@article{RN1217_2020, author = {Liu, Y. and Chen, J. and Khusnutdinova, A. N. and Correia, K. and Diep, P. and Batyrova, K. A. and Nemr, K. and Flick, R. and Stogios, P. and Yakunin, A. F. and Mahadevan, R.}, title = {A novel C-terminal degron identified in bacterial aldehyde decarbonylases using directed evolution}, journal = {Biotechnology for Biofuels}, volume = {13}, number = {1}, DOI = {10.1186/s13068-020-01753-5}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85087829378&doi=10.1186%2fs13068-020-01753-5&partnerID=40&md5=ada84fad2a86652a20611ac0309518b6}, year = {2020}, type = {Journal Article} } - L. Lomheim, L. Laquitaine, S. Rambinaising, R. Flick, A. Starostine, C. Jean-Marius, E. A. Edwards, and S. Gaspard, “Evidence for extensive anaerobic dechlorination and transformation of the pesticide chlordecone (c10cl10o) by indigenous microbes in microcosms from guadeloupe soil,” Plos one, vol. 15, iss. 4, 2020.
[Bibtex]@article{RN1200_2020, author = {Lomheim, L. and Laquitaine, L. and Rambinaising, S. and Flick, R. and Starostine, A. and Jean-Marius, C. and Edwards, E. A. and Gaspard, S.}, title = {Evidence for extensive anaerobic dechlorination and transformation of the pesticide chlordecone (C10Cl10O) by indigenous microbes in microcosms from Guadeloupe soil}, journal = {PLoS ONE}, volume = {15}, number = {4}, DOI = {10.1371/journal.pone.0231219}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85083383874&doi=10.1371%2fjournal.pone.0231219&partnerID=40&md5=41b58d733f9163636abf5f1bd93befd0}, year = {2020}, type = {Journal Article} } - A. Milovanoff, D. I. Posen, B. A. Saville, and H. L. MacLean, “Well-to-wheel greenhouse gas implications of mid-level ethanol blend deployment in canada’s light-duty fleet,” Renewable and sustainable energy reviews, vol. 131, p. 110012, 2020.
[Bibtex]@article{RN1215_2020, author = {Milovanoff, Alexandre and Posen, I. Daniel and Saville, Bradley A. and MacLean, Heather L.}, title = {Well-to-wheel greenhouse gas implications of mid-level ethanol blend deployment in Canada's light-duty fleet}, journal = {Renewable and Sustainable Energy Reviews}, volume = {131}, pages = {110012}, ISSN = {1364-0321}, DOI = {https://doi.org/10.1016/j.rser.2020.110012}, url = {http://www.sciencedirect.com/science/article/pii/S1364032120303038}, year = {2020}, type = {Journal Article} } - O. Molenda, L. A. Puentes Jácome, X. Cao, C. L. Nesbø, S. Tang, N. Morson, J. Patron, L. Lomheim, D. S. Wishart, and E. A. Edwards, “Insights into origins and function of the unexplored majority of the reductive dehalogenase gene family as a result of genome assembly and ortholog group classification,” Environmental science: processes & impacts, 2020.
[Bibtex]@article{RN1199_2020, author = {Molenda, Olivia and Puentes Jácome, Luz A. and Cao, Xuan and Nesbø, Camilla L. and Tang, Shuiquan and Morson, Nadia and Patron, Jonas and Lomheim, Line and Wishart, David S. and Edwards, Elizabeth A.}, title = {Insights into origins and function of the unexplored majority of the reductive dehalogenase gene family as a result of genome assembly and ortholog group classification}, journal = {Environmental Science: Processes & Impacts}, ISSN = {2050-7887}, DOI = {10.1039/C9EM00605B}, url = {http://dx.doi.org/10.1039/C9EM00605B}, year = {2020}, type = {Journal Article} } - S. Nayfach, S. Roux, R. Seshadri, D. Udwary, N. Varghese, F. Schulz, D. Wu, D. Paez-Espino, I. M. Chen, M. Huntemann, K. Palaniappan, J. Ladau, S. Mukherjee, T. B. K. Reddy, T. Nielsen, E. Kirton, J. P. Faria, J. N. Edirisinghe, C. S. Henry, S. P. Jungbluth, D. Chivian, P. Dehal, E. M. Wood-Charlson, A. P. Arkin, S. G. Tringe, A. Visel, H. Abreu, S. G. Acinas, E. Allen, M. A. Allen, G. Andersen, A. M. Anesio, G. Attwood, V. Avila-Magaña, Y. Badis, J. Bailey, B. Baker, P. Baldrian, H. A. Barton, D. A. C. Beck, E. D. Becraft, H. R. Beller, J. M. Beman, R. Bernier-Latmani, T. D. Berry, A. Bertagnolli, S. Bertilsson, J. M. Bhatnagar, J. T. Bird, S. E. Blumer-Schuette, B. Bohannan, M. A. Borton, A. Brady, S. H. Brawley, J. Brodie, S. Brown, J. R. Brum, A. Brune, D. A. Bryant, A. Buchan, D. H. Buckley, J. Buongiorno, H. Cadillo-Quiroz, S. M. Caffrey, A. N. Campbell, B. Campbell, S. Carr, J. L. Carroll, S. C. Cary, A. M. Cates, R. A. Cattolico, R. Cavicchioli, L. Chistoserdova, M. L. Coleman, P. Constant, J. M. Conway, W. P. Mac Cormack, S. Crowe, B. Crump, C. Currie, R. Daly, V. Denef, S. E. Denman, A. Desta, H. Dionisi, J. Dodsworth, N. Dombrowski, T. Donohue, M. Dopson, T. Driscoll, P. Dunfield, C. L. Dupont, K. A. Dynarski, V. Edgcomb, E. A. Edwards, M. S. Elshahed, I. Figueroa, B. Flood, N. Fortney, C. S. Fortunato, and others, “Publisher correction: a genomic catalog of earth’s microbiomes (nature biotechnology, (2020), 10.1038/s41587-020-0718-6),” Nature biotechnology, 2020.
[Bibtex]@article{RN1234_2020, author = {Nayfach, S. and Roux, S. and Seshadri, R. and Udwary, D. and Varghese, N. and Schulz, F. and Wu, D. and Paez-Espino, D. and Chen, I. M. and Huntemann, M. and Palaniappan, K. and Ladau, J. and Mukherjee, S. and Reddy, T. B. K. and Nielsen, T. and Kirton, E. and Faria, J. P. and Edirisinghe, J. N. and Henry, C. S. and Jungbluth, S. P. and Chivian, D. and Dehal, P. and Wood-Charlson, E. M. and Arkin, A. P. and Tringe, S. G. and Visel, A. and Abreu, H. and Acinas, S. G. and Allen, E. and Allen, M. A. and Andersen, G. and Anesio, A. M. and Attwood, G. and Avila-Magaña, V. and Badis, Y. and Bailey, J. and Baker, B. and Baldrian, P. and Barton, H. A. and Beck, D. A. C. and Becraft, E. D. and Beller, H. R. and Beman, J. M. and Bernier-Latmani, R. and Berry, T. D. and Bertagnolli, A. and Bertilsson, S. and Bhatnagar, J. M. and Bird, J. T. and Blumer-Schuette, S. E. and Bohannan, B. and Borton, M. A. and Brady, A. and Brawley, S. H. and Brodie, J. and Brown, S. and Brum, J. R. and Brune, A. and Bryant, D. A. and Buchan, A. and Buckley, D. H. and Buongiorno, J. and Cadillo-Quiroz, H. and Caffrey, S. M. and Campbell, A. N. and Campbell, B. and Carr, S. and Carroll, J. L. and Cary, S. C. and Cates, A. M. and Cattolico, R. A. and Cavicchioli, R. and Chistoserdova, L. and Coleman, M. L. and Constant, P. and Conway, J. M. and Mac Cormack, W. P. and Crowe, S. and Crump, B. and Currie, C. and Daly, R. and Denef, V. and Denman, S. E. and Desta, A. and Dionisi, H. and Dodsworth, J. and Dombrowski, N. and Donohue, T. and Dopson, M. and Driscoll, T. and Dunfield, P. and Dupont, C. L. and Dynarski, K. A. and Edgcomb, V. and Edwards, E. A. and Elshahed, M. S. and Figueroa, I. and Flood, B. and Fortney, N. and Fortunato, C. S. and others }, title = {Publisher Correction: A genomic catalog of Earth’s microbiomes (Nature Biotechnology, (2020), 10.1038/s41587-020-0718-6)}, journal = {Nature Biotechnology}, DOI = {10.1038/s41587-020-00769-4}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85096288309&doi=10.1038%2fs41587-020-00769-4&partnerID=40&md5=fda8c75f24509f0beaa3885a803a5def}, year = {2020}, type = {Journal Article} } - J. A. Obnamia, H. L. MacLean, and B. A. Saville, “Regional variations in life cycle greenhouse gas emissions of canola-derived jet fuel produced in western canada,” Gcb bioenergy, vol. 12, iss. 10, pp. 818-833, 2020.
[Bibtex]@article{RN1227_2020, author = {Obnamia, J. A. and MacLean, H. L. and Saville, B. A.}, title = {Regional variations in life cycle greenhouse gas emissions of canola-derived jet fuel produced in western Canada}, journal = {GCB Bioenergy}, volume = {12}, number = {10}, pages = {818-833}, DOI = {10.1111/gcbb.12735}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85089903267&doi=10.1111%2fgcbb.12735&partnerID=40&md5=cc88c07104a473764738bed3e9ae7446}, year = {2020}, type = {Journal Article} } - A. J. Paquette, C. E. Sharp, P. J. Schnurr, G. D. Allen, S. M. Short, and G. S. Espie, “Dynamic changes in community composition of scenedesmus-seeded artificial, engineered microalgal biofilms,” Algal research, vol. 46, p. 101805, 2020.
[Bibtex]@article{RN1224_2020, author = {Paquette, Alexandre J. and Sharp, Christine E. and Schnurr, Peter J. and Allen, D. Grant and Short, Steven M. and Espie, George S.}, title = {Dynamic changes in community composition of Scenedesmus-seeded artificial, engineered microalgal biofilms}, journal = {Algal Research}, volume = {46}, pages = {101805}, ISSN = {2211-9264}, DOI = {https://doi.org/10.1016/j.algal.2020.101805}, url = {http://www.sciencedirect.com/science/article/pii/S2211926419307258}, year = {2020}, type = {Journal Article} } - G. Popov, E. Evdokimova, P. J. Stogios, and A. Savchenko, “Structure of the full-length serratia marcescens acetyltransferase aac(3)-ia in complex with coenzyme a,” Protein science, vol. 29, iss. 3, pp. 803-808, 2020.
[Bibtex]@article{RN1203_2020, author = {Popov, G. and Evdokimova, E. and Stogios, P. J. and Savchenko, A.}, title = {Structure of the full-length Serratia marcescens acetyltransferase AAC(3)-Ia in complex with coenzyme A}, journal = {Protein Science}, volume = {29}, number = {3}, pages = {803-808}, DOI = {10.1002/pro.3811}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85078940612&doi=10.1002%2fpro.3811&partnerID=40&md5=baf750890af78b3c95aa45943b008e7e}, year = {2020}, type = {Journal Article} } - W. Qiao, L. A. Puentes Jácome, X. Tang, L. Lomheim, M. I. Yang, S. Gaspard, I. R. Avanzi, J. Wu, S. Ye, and E. A. Edwards, “Microbial communities associated with sustained anaerobic reductive dechlorination of α-, β-, γ-, and δ-hexachlorocyclohexane isomers to monochlorobenzene and benzene,” Environmental science & technology, vol. 54, iss. 1, pp. 255-265, 2020.
[Bibtex]@article{RN1196_2020, author = {Qiao, Wenjing and Puentes Jácome, Luz A. and Tang, Xianjin and Lomheim, Line and Yang, Minqing Ivy and Gaspard, Sarra and Avanzi, Ingrid Regina and Wu, Jichun and Ye, Shujun and Edwards, Elizabeth A.}, title = {Microbial Communities Associated with Sustained Anaerobic Reductive Dechlorination of α-, β-, γ-, and δ-Hexachlorocyclohexane Isomers to Monochlorobenzene and Benzene}, journal = {Environmental Science & Technology}, volume = {54}, number = {1}, pages = {255-265}, ISSN = {0013-936X}, DOI = {10.1021/acs.est.9b05558}, url = {https://doi.org/10.1021/acs.est.9b05558}, year = {2020}, type = {Journal Article} } - K. Raj, N. Venayak, and R. Mahadevan, “Novel two-stage processes for optimal chemical production in microbes,” Biorxiv, p. 803023, 2020.
[Bibtex]@article{RN1222_2020, author = {Raj, Kaushik and Venayak, Naveen and Mahadevan, Radhakrishnan}, title = {Novel two-stage processes for optimal chemical production in microbes}, journal = {bioRxiv}, pages = {803023}, DOI = {10.1101/803023}, url = {http://biorxiv.org/content/early/2020/05/12/803023.abstract}, year = {2020}, type = {Journal Article} } - O. Raji, J. Arnling Bååth, T. V. Vuong, J. Larsbrink, L. Olsson, and E. R. Master, “The coordinated action of glucuronoyl esterase and α-glucuronidase promotes the disassembly of lignin–carbohydrate complexes,” Febs letters, 2020.
[Bibtex]@article{RN1237_2020, author = {Raji, O. and Arnling Bååth, J. and Vuong, T. V. and Larsbrink, J. and Olsson, L. and Master, E. R.}, title = {The coordinated action of glucuronoyl esterase and α-glucuronidase promotes the disassembly of lignin–carbohydrate complexes}, journal = {FEBS Letters}, DOI = {10.1002/1873-3468.14019}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85099032360&doi=10.1002%2f1873-3468.14019&partnerID=40&md5=c4a5d08735a4e073ee754d664868ef10}, year = {2020}, type = {Journal Article} } - C. Semper, P. Stogios, D. Meziane-Cherif, E. Evdokimova, P. Courvalin, and A. Savchenko, “Structural characterization of aminoglycoside 4′-o-adenylyltransferase ant(4′)-iib from pseudomonas aeruginosa,” Protein science, vol. 29, iss. 3, pp. 758-767, 2020.
[Bibtex]@article{RN1193_2020, author = {Semper, Cameron and Stogios, Peter and Meziane-Cherif, Djalal and Evdokimova, Elena and Courvalin, Patrice and Savchenko, Alexei}, title = {Structural characterization of aminoglycoside 4′-O-adenylyltransferase ANT(4′)-IIb from Pseudomonas aeruginosa}, journal = {Protein Science}, volume = {29}, number = {3}, pages = {758-767}, ISSN = {0961-8368}, DOI = {10.1002/pro.3815}, url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/pro.3815}, year = {2020}, type = {Journal Article} } - J. P. Soleas, E. D’Arcangelo, L. Huang, G. Karoubi, M. C. Nostro, A. P. McGuigan, and T. K. Waddell, “Assembly of lung progenitors into developmentally-inspired geometry drives differentiation via cellular tension,” Biomaterials, vol. 254, 2020.
[Bibtex]@article{RN1214_2020, author = {Soleas, J. P. and D'Arcangelo, E. and Huang, L. and Karoubi, G. and Nostro, M. C. and McGuigan, A. P. and Waddell, T. K.}, title = {Assembly of lung progenitors into developmentally-inspired geometry drives differentiation via cellular tension}, journal = {Biomaterials}, volume = {254}, DOI = {10.1016/j.biomaterials.2020.120128}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85085268902&doi=10.1016%2fj.biomaterials.2020.120128&partnerID=40&md5=d5dbeeffc46236dccb727b098972ab72}, year = {2020}, type = {Journal Article} } - P. J. Stogios and A. Savchenko, “Molecular mechanisms of vancomycin resistance,” Protein science, vol. 29, iss. 3, pp. 654-669, 2020.
[Bibtex]@article{RN1194_2020, author = {Stogios, Peter J. and Savchenko, Alexei}, title = {Molecular mechanisms of vancomycin resistance}, journal = {Protein Science}, volume = {29}, number = {3}, pages = {654-669}, ISSN = {0961-8368}, DOI = {10.1002/pro.3819}, url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/pro.3819}, year = {2020}, type = {Journal Article} } - R. Varma, J. P. Soleas, T. K. Waddell, G. Karoubi, and A. P. McGuigan, “Current strategies and opportunities to manufacture cells for modeling human lungs,” Advanced drug delivery reviews, 2020.
[Bibtex]@article{RN1226_2020, author = {Varma, R. and Soleas, J. P. and Waddell, T. K. and Karoubi, G. and McGuigan, A. P.}, title = {Current strategies and opportunities to manufacture cells for modeling human lungs}, journal = {Advanced Drug Delivery Reviews}, DOI = {10.1016/j.addr.2020.08.005}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85090057754&doi=10.1016%2fj.addr.2020.08.005&partnerID=40&md5=e3633621c8d9bf8f6665668406aa4048}, year = {2020}, type = {Journal Article} } - I. M. Yang, M. Previdsa, E. A. Edwards, and B. E. Sleep, “Using cell yields and qpcr to estimate biotic contribution to 1,1,1-trichloroethane dechlorination at a field site treated with granular zero valent iron and guar gum,” Biorxiv, p. 583229, 2020.
[Bibtex]@article{RN1216_2020, author = {Yang, M. Ivy and Previdsa, Michael and Edwards, Elizabeth A. and Sleep, Brent E.}, title = {Using cell yields and qPCR to estimate biotic contribution to 1,1,1-trichloroethane dechlorination at a field site treated with granular zero valent iron and guar gum}, journal = {bioRxiv}, pages = {583229}, DOI = {10.1101/583229}, url = {http://biorxiv.org/content/early/2020/06/08/583229.abstract}, year = {2020}, type = {Journal Article} }
2019
- S. Ahmad, B. Wang, M. D. Walker, H. K. R. Tran, P. J. Stogios, A. Savchenko, R. A. Grant, A. G. McArthur, M. T. Laub, and J. C. Whitney, “An interbacterial toxin inhibits target cell growth by synthesizing (p)ppapp,” Nature, 2019.
[Bibtex]@article{RN1184_2019, author = {Ahmad, S. and Wang, B. and Walker, M. D. and Tran, H. K. R. and Stogios, P. J. and Savchenko, A. and Grant, R. A. and McArthur, A. G. and Laub, M. T. and Whitney, J. C.}, title = {An interbacterial toxin inhibits target cell growth by synthesizing (p)ppApp}, journal = {Nature}, DOI = {10.1038/s41586-019-1735-9}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85074772817&doi=10.1038%2fs41586-019-1735-9&partnerID=40&md5=dfa52ccc6b48a1ba3d8d4decbea0c3a2}, year = {2019}, type = {Journal Article} } - G. Arnal, P. J. Stogios, J. Asohan, M. A. Attia, T. Skarina, A. H. Viborg, B. Henrissat, A. Savchenko, and H. Brumer, “Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74,” Journal of biological chemistry, vol. 294, iss. 36, pp. 13233-13247, 2019.
[Bibtex]@article{RN1174_2019, author = {Arnal, G. and Stogios, P. J. and Asohan, J. and Attia, M. A. and Skarina, T. and Viborg, A. H. and Henrissat, B. and Savchenko, A. and Brumer, H.}, title = {Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74}, journal = {Journal of Biological Chemistry}, volume = {294}, number = {36}, pages = {13233-13247}, DOI = {10.1074/jbc.RA119.009861}, url = {https://www2.scopus.com/inward/record.uri?eid=2-s2.0-85071830590&doi=10.1074%2fjbc.RA119.009861&partnerID=40&md5=d526c8258885deec6498b21f6d8f8099}, year = {2019}, type = {Journal Article} } - V. Aumala, F. Mollerup, E. Jurak, F. Blume, J. Karppi, A. E. Koistinen, E. Schuiten, M. Voß, U. Bornscheuer, J. Deska, and E. R. Master, “Biocatalytic production of amino carbohydrates through oxidoreductase and transaminase cascades,” Chemsuschem, 2019.
[Bibtex]@article{RN1159_2019, author = {Aumala, V. and Mollerup, F. and Jurak, E. and Blume, F. and Karppi, J. and Koistinen, A. E. and Schuiten, E. and Voß, M. and Bornscheuer, U. and Deska, J. and Master, E. R.}, title = {Biocatalytic Production of Amino Carbohydrates through Oxidoreductase and Transaminase Cascades}, journal = {ChemSusChem}, DOI = {10.1002/cssc.201802580}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85060948148&doi=10.1002%2fcssc.201802580&partnerID=40&md5=8254c30b7d015083eb5d0ef393cb0932}, year = {2019}, type = {Journal Article} } - L. L. Diosady, M. G. V. Mannar, and K. Krishnaswamy, “Improving the lives of millions through new double fortification of salt technology,” Maternal and child nutrition, vol. 15, iss. S3, 2019.
[Bibtex]@article{RN1169_2019, author = {Diosady, L. L. and Mannar, M. G. V. and Krishnaswamy, K.}, title = {Improving the lives of millions through new double fortification of salt technology}, journal = {Maternal and Child Nutrition}, volume = {15}, number = {S3}, DOI = {10.1111/mcn.12773}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85066480572&doi=10.1111%2fmcn.12773&partnerID=40&md5=93a39d0a638d7dfa0f73907063ccd062}, year = {2019}, type = {Journal Article} } - N. G. H. Guilford, H. P. Lee, K. Kanger, T. Meyer, and E. A. Edwards, “Solid-state anaerobic digestion of mixed organic waste: the synergistic effect of food waste addition on the destruction of paper and cardboard,” Environmental science and technology, 2019.
[Bibtex]@article{RN1179_2019, author = {Guilford, N. G. H. and Lee, H. P. and Kanger, K. and Meyer, T. and Edwards, E. A.}, title = {Solid-State Anaerobic Digestion of Mixed Organic Waste: The Synergistic Effect of Food Waste Addition on the Destruction of Paper and Cardboard}, journal = {Environmental Science and Technology}, DOI = {10.1021/acs.est.9b04644}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85074224712&doi=10.1021%2facs.est.9b04644&partnerID=40&md5=62f78fcaa610d77f91166d494a308cde}, year = {2019}, type = {Journal Article} } - G. L. W. Heavner, C. B. Mansfeldt, M. J. Wilkins, C. D. Nicora, G. E. Debs, E. A. Edwards, and R. E. Richardson, “Detection of organohalide-respiring enzyme biomarkers at a bioaugmented tce-contaminated field site,” Frontiers in microbiology, vol. 10, iss. JUN, 2019.
[Bibtex]@article{RN1173_2019, author = {Heavner, G. L. W. and Mansfeldt, C. B. and Wilkins, M. J. and Nicora, C. D. and Debs, G. E. and Edwards, E. A. and Richardson, R. E.}, title = {Detection of organohalide-respiring enzyme biomarkers at a bioaugmented TCE-contaminated field site}, journal = {Frontiers in Microbiology}, volume = {10}, number = {JUN}, DOI = {10.3389/fmicb.2019.01433}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85069048287&doi=10.3389%2ffmicb.2019.01433&partnerID=40&md5=b6b612e06d3b2db2938837e83abe361b}, year = {2019}, type = {Journal Article} } - B. Heckel, E. Phillips, E. Edwards, B. Sherwood Lollar, M. Elsner, M. J. Manefield, and M. Lee, “Reductive dehalogenation of trichloromethane by two different dehalobacter restrictus strains reveal opposing dual element isotope effects,” Environmental science and technology, vol. 53, iss. 5, pp. 2332-2343, 2019.
[Bibtex]@article{RN1162_2019, author = {Heckel, B. and Phillips, E. and Edwards, E. and Sherwood Lollar, B. and Elsner, M. and Manefield, M. J. and Lee, M.}, title = {Reductive Dehalogenation of Trichloromethane by Two Different Dehalobacter restrictus Strains Reveal Opposing Dual Element Isotope Effects}, journal = {Environmental Science and Technology}, volume = {53}, number = {5}, pages = {2332-2343}, DOI = {10.1021/acs.est.8b03717}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85062359905&doi=10.1021%2facs.est.8b03717&partnerID=40&md5=1166b20fb11b5ba4e4ce4524fbfab811}, year = {2019}, type = {Journal Article} } - T. Kim, P. Stogios, K. Anna, K. Nemr, T. Skarina, R. Flick, J. C. Joo, R. Mahadevan, A. Savtchenko, and A. Yakunin, “Rational engineering of 2-deoxyribose-5-phosphate aldolases for the biosynthesis of ( r )-1,3-butanediol,” Journal of biological chemistry, vol. 295, p. jbc.RA119.011363, 2019.
[Bibtex]@article{RN1197_2019, author = {Kim, Taeho and Stogios, Peter and Anna, Khusnutdinova and Nemr, Kayla and Skarina, Tatiana and Flick, Robert and Joo, Jeong Chan and Mahadevan, Radhakrishnan and Savtchenko, Alex and Yakunin, Alexander}, title = {Rational engineering of 2-deoxyribose-5-phosphate aldolases for the biosynthesis of ( R )-1,3-butanediol}, journal = {Journal of Biological Chemistry}, volume = {295}, pages = {jbc.RA119.011363}, DOI = {10.1074/jbc.RA119.011363}, year = {2019}, type = {Journal Article} } - N. T. Li, D. Rodenhizer, J. Mou, A. Shahaj, K. Samardzic, and A. P. McGuigan, “Development of a bioprinting approach for automated manufacturing of multi-cell type biocomposite tracer strips using contact capillary-wicking,” Biofabrication, vol. 12, iss. 1, p. 15001, 2019.
[Bibtex]@article{RN1180_2019, author = {Li, N. T. and Rodenhizer, D. and Mou, J. and Shahaj, A. and Samardzic, K. and McGuigan, A. P.}, title = {Development of a bioprinting approach for automated manufacturing of multi-cell type biocomposite TRACER strips using contact capillary-wicking}, journal = {Biofabrication}, volume = {12}, number = {1}, pages = {015001}, DOI = {10.1088/1758-5090/ab47e8}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85073664775&doi=10.1088%2f1758-5090%2fab47e8&partnerID=40&md5=91942f38eafb56049d018bb09078fd6f}, year = {2019}, type = {Journal Article} } - C. Lihl, L. M. Douglas, S. Franke, A. Perez-de-Mora, A. H. Meyer, M. Daubmeier, E. A. Edwards, I. Nijenhuis, B. Sherwood Lollar, and M. Elsner, “Mechanistic dichotomy in bacterial trichloroethene dechlorination revealed by carbon and chlorine isotope effects,” Environmental science & technology, 2019.
[Bibtex]@article{RN1165_2019, author = {Lihl, Christina and Douglas, Lisa M. and Franke, Steffi and Perez-de-Mora, Alfredo and Meyer, Armin H. and Daubmeier, Martina and Edwards, Elizabeth A. and Nijenhuis, Ivonne and Sherwood Lollar, Barbara and Elsner, Martin}, title = {Mechanistic dichotomy in bacterial trichloroethene dechlorination revealed by carbon and chlorine isotope effects}, journal = {Environmental Science & Technology}, ISSN = {0013-936X}, DOI = {10.1021/acs.est.8b06643}, url = {https://doi.org/10.1021/acs.est.8b06643}, year = {2019}, type = {Journal Article} } - K. S. Makarova, Y. I. Wolf, J. Iranzo, S. A. Shmakov, O. S. Alkhnbashi, S. J. J. Brouns, E. Charpentier, D. Cheng, D. H. Haft, P. Horvath, S. Moineau, F. J. M. Mojica, D. Scott, S. A. Shah, V. Siksnys, M. P. Terns, Č. Venclovas, M. F. White, A. F. Yakunin, W. Yan, F. Zhang, R. A. Garrett, R. Backofen, J. van der Oost, R. Barrangou, and E. V. Koonin, “Evolutionary classification of crispr–cas systems: a burst of class 2 and derived variants,” Nature reviews microbiology, 2019.
[Bibtex]@article{RN1187_2019, author = {Makarova, K. S. and Wolf, Y. I. and Iranzo, J. and Shmakov, S. A. and Alkhnbashi, O. S. and Brouns, S. J. J. and Charpentier, E. and Cheng, D. and Haft, D. H. and Horvath, P. and Moineau, S. and Mojica, F. J. M. and Scott, D. and Shah, S. A. and Siksnys, V. and Terns, M. P. and Venclovas, Č and White, M. F. and Yakunin, A. F. and Yan, W. and Zhang, F. and Garrett, R. A. and Backofen, R. and van der Oost, J. and Barrangou, R. and Koonin, E. V.}, title = {Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants}, journal = {Nature Reviews Microbiology}, DOI = {10.1038/s41579-019-0299-x}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85077053807&doi=10.1038%2fs41579-019-0299-x&partnerID=40&md5=ca89bd71fafab82d3cba97ba64cb69c1}, year = {2019}, type = {Journal Article} } - O. Modupe, K. Krishnaswamy, and L. L. Diosady, “Technology for triple fortification of salt with folic acid, iron, and iodine,” Journal of food science, 2019.
[Bibtex]@article{RN1176_2019, author = {Modupe, O. and Krishnaswamy, K. and Diosady, L. L.}, title = {Technology for Triple Fortification of Salt with Folic Acid, Iron, and Iodine}, journal = {Journal of Food Science}, DOI = {10.1111/1750-3841.14730}, url = {https://www2.scopus.com/inward/record.uri?eid=2-s2.0-85070771553&doi=10.1111%2f1750-3841.14730&partnerID=40&md5=13cd3c9bae9663a9eb6899621308604f}, year = {2019}, type = {Journal Article} } - F. Mollerup, V. Aumala, K. Parikka, Y. Mathieu, H. Brumer, M. Tenkanen, and E. Master, “A family aa5_2 carbohydrate oxidase from penicillium rubens displays functional overlap across the aa5 family,” Plos one, vol. 14, iss. 5, 2019.
[Bibtex]@article{RN1170_2019, author = {Mollerup, F. and Aumala, V. and Parikka, K. and Mathieu, Y. and Brumer, H. and Tenkanen, M. and Master, E.}, title = {A family AA5_2 carbohydrate oxidase from Penicillium rubens displays functional overlap across the AA5 family}, journal = {PLoS ONE}, volume = {14}, number = {5}, DOI = {10.1371/journal.pone.0216546}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85065913917&doi=10.1371%2fjournal.pone.0216546&partnerID=40&md5=a0e2d3f83c16ba32d484833cd834045f}, year = {2019}, type = {Journal Article} } - Y. Mottiar, N. Gierlinger, D. Jeremic, E. R. Master, and S. D. Mansfield, “Atypical lignification in eastern leatherwood (dirca palustris),” New phytologist, vol. n/a, iss. n/a, 2019.
[Bibtex]@article{RN1192_2019, author = {Mottiar, Yaseen and Gierlinger, Notburga and Jeremic, Dragica and Master, Emma R. and Mansfield, Shawn D.}, title = {Atypical lignification in eastern leatherwood (Dirca palustris)}, journal = {New Phytologist}, volume = {n/a}, number = {n/a}, ISSN = {0028-646X}, DOI = {10.1111/nph.16394}, url = {https://nph.onlinelibrary.wiley.com/doi/abs/10.1111/nph.16394}, year = {2019}, type = {Journal Article} } - R. U. Ndubuisi, S. Sinichi, Y. H. Chin, and L. L. Diosady, “Diesel precursors via catalytic hydrothermal deoxygenation of aqueous canola oil emulsion,” Jaocs, journal of the american oil chemists’ society, 2019.
[Bibtex]@article{RN1163_2019, author = {Ndubuisi, R. U. and Sinichi, S. and Chin, Y. H. and Diosady, L. L.}, title = {Diesel Precursors Via Catalytic Hydrothermal Deoxygenation of Aqueous Canola Oil Emulsion}, journal = {JAOCS, Journal of the American Oil Chemists' Society}, DOI = {10.1002/aocs.12208}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85062956833&doi=10.1002%2faocs.12208&partnerID=40&md5=6f66cd16a9713aed6b9fb040f902376d}, year = {2019}, type = {Journal Article} } - J. A. Obnamia, G. M. Dias, H. L. MacLean, and B. A. Saville, “Comparison of u.s. midwest corn stover ethanol greenhouse gas emissions from greet and ghgenius,” Applied energy, pp. 591-601, 2019.
[Bibtex]@article{RN1154_2019, author = {Obnamia, J. A. and Dias, G. M. and MacLean, H. L. and Saville, B. A.}, title = {Comparison of U.S. Midwest corn stover ethanol greenhouse gas emissions from GREET and GHGenius}, journal = {Applied Energy}, pages = {591-601}, DOI = {10.1016/j.apenergy.2018.10.091}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85056236673&doi=10.1016%2fj.apenergy.2018.10.091&partnerID=40&md5=2ff85c23a7ebfda90ce61613ab74f022}, year = {2019}, type = {Journal Article} } - G. Popov, A. Fiebig-Comyn, S. Shideler, B. K. Coombes, and A. Savchenko, “Complete genome sequence of citrobacter rodentium strain dbs100,” Microbiology resource announcements, vol. 8, iss. 24, 2019.
[Bibtex]@article{RN1172_2019, author = {Popov, G. and Fiebig-Comyn, A. and Shideler, S. and Coombes, B. K. and Savchenko, A.}, title = {Complete genome sequence of Citrobacter rodentium strain DBS100}, journal = {Microbiology Resource Announcements}, volume = {8}, number = {24}, DOI = {10.1128/MRA.00421-19}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85068459205&doi=10.1128%2fMRA.00421-19&partnerID=40&md5=9fdb421ebc19154bb21f91f01ea94c92}, year = {2019}, type = {Journal Article} } - L. A. Puentes Jácome, P. H. Wang, O. Molenda, Y. X. Li, M. A. Islam, and E. A. elizabeth edwards utoronto ca Edwards, “Sustained dechlorination of vinyl chloride to ethene in dehalococcoides-enriched cultures grown without addition of exogenous vitamins and at low ph,” Environmental science and technology, vol. 53, iss. 19, 2019.
[Bibtex]@article{RN1182_2019, author = {Puentes Jácome, L. A. and Wang, P. H. and Molenda, O. and Li, Y. X. and Islam, M. A. and Edwards, E. A. elizabeth edwards utoronto ca}, title = {Sustained dechlorination of vinyl chloride to ethene in dehalococcoides-enriched cultures grown without addition of exogenous vitamins and at low ph}, journal = {Environmental Science and Technology}, volume = {53}, number = {19}, DOI = {10.1021/acs.est.9b02339}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85072791476&doi=10.1021%2facs.est.9b02339&partnerID=40&md5=a9ef784f0214d22521925c420e03fde1}, year = {2019}, type = {Journal Article} } - C. Salmean, S. Bonilla, Y. Azimi, S. J. Aitchison, and G. D. Allen, “Design and testing of an externally-coupled planar waveguide photobioreactor,” Algal research, vol. 44, p. 101684, 2019.
[Bibtex]@article{RN1225_2019, author = {Salmean, Christopher and Bonilla, Sofia and Azimi, Yaldah and Aitchison, J. Stewart and Allen, D. Grant}, title = {Design and testing of an externally-coupled planar waveguide photobioreactor}, journal = {Algal Research}, volume = {44}, pages = {101684}, ISSN = {2211-9264}, DOI = {https://doi.org/10.1016/j.algal.2019.101684}, url = {http://www.sciencedirect.com/science/article/pii/S2211926419303741}, year = {2019}, type = {Journal Article} } - C. Sarch, H. Suzuki, E. R. Master, and W. Wang, “Kinetics and regioselectivity of three gh62 α-l-arabinofuranosidases from plant pathogenic fungi,” Biochimica et biophysica acta – general subjects, vol. 1863, iss. 6, pp. 1070-1078, 2019.
[Bibtex]@article{RN1167_2019, author = {Sarch, C. and Suzuki, H. and Master, E. R. and Wang, W.}, title = {Kinetics and regioselectivity of three GH62 α-L-arabinofuranosidases from plant pathogenic fungi}, journal = {Biochimica et Biophysica Acta - General Subjects}, volume = {1863}, number = {6}, pages = {1070-1078}, DOI = {10.1016/j.bbagen.2019.03.020}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85064082182&doi=10.1016%2fj.bbagen.2019.03.020&partnerID=40&md5=6add4d60b7fc3aae72f9a3ea36cccb7c}, year = {2019}, type = {Journal Article} } - B. Slater, E. Ng, and A. P. McGuigan, “Local cell coordination does not alter individual cell migration during collective migration but does impact cellular exchange events,” Integrative biology : quantitative biosciences from nano to macro, vol. 11, iss. 4, pp. 163-172, 2019.
[Bibtex]@article{RN1177_2019, author = {Slater, B. and Ng, E. and McGuigan, A. P.}, title = {Local cell coordination does not alter individual cell migration during collective migration but does impact cellular exchange events}, journal = {Integrative biology : quantitative biosciences from nano to macro}, volume = {11}, number = {4}, pages = {163-172}, DOI = {10.1093/intbio/zyz015}, url = {https://www2.scopus.com/inward/record.uri?eid=2-s2.0-85069271065&doi=10.1093%2fintbio%2fzyz015&partnerID=40&md5=7eb3d8860ee8b0ada68f84ec7ee31a9c}, year = {2019}, type = {Journal Article} } - P. H. Wang, K. Fujishima, S. Berhanu, Y. Kuruma, T. Z. Jia, A. N. Khusnutdinova, A. F. Yakunin, and S. E. McGlynn, “A bifunctional polyphosphate kinase driving the regeneration of nucleoside triphosphate and reconstituted cell-free protein synthesis,” Acs synthetic biology, 2019.
[Bibtex]@article{RN1188_2019, author = {Wang, P. H. and Fujishima, K. and Berhanu, S. and Kuruma, Y. and Jia, T. Z. and Khusnutdinova, A. N. and Yakunin, A. F. and McGlynn, S. E.}, title = {A Bifunctional Polyphosphate Kinase Driving the Regeneration of Nucleoside Triphosphate and Reconstituted Cell-Free Protein Synthesis}, journal = {ACS Synthetic Biology}, DOI = {10.1021/acssynbio.9b00456}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85077128717&doi=10.1021%2facssynbio.9b00456&partnerID=40&md5=8b01f9fb4cc38bfb865101b5dbefd7d5}, year = {2019}, type = {Journal Article} } - P. Wang, K. Correia, H. Ho, N. Venayak, K. Nemr, R. Flick, R. Mahadevan, and E. A. Edwards, “An interspecies malate–pyruvate shuttle reconciles redox imbalance in an anaerobic microbial community,” The isme journal, vol. 13, iss. 4, pp. 1042-1055, 2019.
[Bibtex]@article{RN1164_2019, author = {Wang, Po-Hsiang and Correia, Kevin and Ho, Han-Chen and Venayak, Naveen and Nemr, Kayla and Flick, Robert and Mahadevan, Radhakrishnan and Edwards, Elizabeth A.}, title = {An interspecies malate–pyruvate shuttle reconciles redox imbalance in an anaerobic microbial community}, journal = {The ISME Journal}, volume = {13}, number = {4}, pages = {1042-1055}, ISSN = {1751-7370}, DOI = {10.1038/s41396-018-0333-4}, url = {https://doi.org/10.1038/s41396-018-0333-4}, year = {2019}, type = {Journal Article} } - B. Wu, J. Gaskell, J. Zhang, C. Toapanta, S. Ahrendt, I. V. Grigoriev, R. A. Blanchette, J. S. Schilling, E. Master, D. Cullen, and D. S. Hibbett, “Evolution of substrate-specific gene expression and rna editing in brown rot wood-decaying fungi,” Isme journal, 2019.
[Bibtex]@article{RN1160_2019, author = {Wu, B. and Gaskell, J. and Zhang, J. and Toapanta, C. and Ahrendt, S. and Grigoriev, I. V. and Blanchette, R. A. and Schilling, J. S. and Master, E. and Cullen, D. and Hibbett, D. S.}, title = {Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi}, journal = {ISME Journal}, DOI = {10.1038/s41396-019-0359-2}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85061216943&doi=10.1038%2fs41396-019-0359-2&partnerID=40&md5=cb9bba3bde14f03e405b1c32f4b6444a}, year = {2019}, type = {Journal Article} }
2018
- M. Bonert and B. A. Saville, “Principles of renal function measurement (limitations of gotch’s kt/v),” Canadian journal of kidney health and disease, vol. 5, 2018.
[Bibtex]@article{RN1175_2018, author = {Bonert, M. and Saville, B. A.}, title = {Principles of Renal Function Measurement (Limitations of Gotch’s Kt/V)}, journal = {Canadian Journal of Kidney Health and Disease}, volume = {5}, DOI = {10.1177/2054358118776020}, url = {https://www2.scopus.com/inward/record.uri?eid=2-s2.0-85071387929&doi=10.1177%2f2054358118776020&partnerID=40&md5=f963df4421a75f30b20bbb786f6b0783}, year = {2018}, type = {Journal Article} } - S. Bonilla and D. G. Allen, “Cationic proteins for enhancing biosludge dewaterability: a comparative assessment of surface and conditioning characteristics of synthetic polymers, surfactants and proteins,” Separation and purification technology, vol. 191, pp. 200-207, 2018.
[Bibtex]@article{RN1067_2018, author = {Bonilla, S. and Allen, D. G.}, title = {Cationic proteins for enhancing biosludge dewaterability: A comparative assessment of surface and conditioning characteristics of synthetic polymers, surfactants and proteins}, journal = {Separation and Purification Technology}, volume = {191}, pages = {200-207}, ISSN = {13835866 (ISSN)}, DOI = {10.1016/j.seppur.2017.08.048}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85029723270&doi=10.1016%2fj.seppur.2017.08.048&partnerID=40&md5=b00448dfbb17533ae40c407c962ee6d3}, year = {2018}, type = {Journal Article} } - S. Bonilla, Z. Choolaei, T. Meyer, E. A. Edwards, A. F. Yakunin, and D. G. Allen, “Evaluating the effect of enzymatic pretreatment on the anaerobic digestibility of pulp and paper biosludge,” Biotechnology reports, vol. 17, pp. 77-85, 2018.
[Bibtex]@article{RN1098_2018, author = {Bonilla, S. and Choolaei, Z. and Meyer, T. and Edwards, E. A. and Yakunin, A. F. and Allen, D. G.}, title = {Evaluating the effect of enzymatic pretreatment on the anaerobic digestibility of pulp and paper biosludge}, journal = {Biotechnology Reports}, volume = {17}, pages = {77-85}, DOI = {10.1016/j.btre.2017.12.009}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85040252111&doi=10.1016%2fj.btre.2017.12.009&partnerID=40&md5=3edb31fe69c257d21a1812b581a9ce4b}, year = {2018}, type = {Journal Article} } - M. Burda-Grabowska, K. Macegoniuk, R. Flick, B. P. Nocek, A. Joachimiak, A. F. Yakunin, A. Mucha, and Ł. Berlicki, “Bisphosphonic acids and related compounds as inhibitors of nucleotide- and polyphosphate-processing enzymes: a ppk1 and ppk2 case study,” Chemical biology & drug design, 2018.
[Bibtex]@article{RN1149_2018, author = {Burda-Grabowska, Małgorzata and Macegoniuk, Katarzyna and Flick, Robert and Nocek, Boguslaw P. and Joachimiak, Andrzej and Yakunin, Alexander F. and Mucha, Artur and Berlicki, Łukasz}, title = {Bisphosphonic acids and related compounds as inhibitors of nucleotide- and polyphosphate-processing enzymes: A PPK1 and PPK2 case study}, journal = {Chemical Biology & Drug Design}, volume = {0}, number = {0}, ISSN = {1747-0277}, DOI = {10.1111/cbdd.13439}, url = {https://doi.org/10.1111/cbdd.13439}, year = {2018}, type = {Journal Article} } - A. Cao, N. Alluqmani, F. H. M. Buhari, L. Wasim, L. K. Smith, A. T. Quaile, M. Shannon, Z. Hakim, H. Furmli, D. M. Owen, A. Savchenko, and B. Treanor, “Galectin-9 binds igm-bcr to regulate b cell signaling,” Nature communications, vol. 9, iss. 1, p. 3288, 2018.
[Bibtex]@article{RN1129_2018, author = {Cao, Anh and Alluqmani, Nouf and Buhari, Fatima Hifza Mohammed and Wasim, Laabiah and Smith, Logan K. and Quaile, Andrew T. and Shannon, Michael and Hakim, Zaki and Furmli, Hossai and Owen, Dylan M. and Savchenko, Alexei and Treanor, Bebhinn}, title = {Galectin-9 binds IgM-BCR to regulate B cell signaling}, journal = {Nature Communications}, volume = {9}, number = {1}, pages = {3288}, ISSN = {2041-1723}, DOI = {10.1038/s41467-018-05771-8}, url = {https://doi.org/10.1038/s41467-018-05771-8}, year = {2018}, type = {Journal Article} } - B. K. Chen and L. L. Diosady, “Production of food-grade canola proteins by membrane-based process,” International news on fats, oils and related materials, vol. 29, iss. 1, pp. 14-17, 2018.
[Bibtex]@article{RN1126_2018, author = {Chen, B. K. and Diosady, L. L.}, title = {Production of food-grade canola proteins by membrane-based process}, journal = {International News on Fats, Oils and Related Materials}, volume = {29}, number = {1}, pages = {14-17}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85049133926&partnerID=40&md5=f88e7a951d03d8c149e22bce23e53505}, year = {2018}, type = {Journal Article} } - C. Coscolín, M. Martínez-Martínez, J. Chow, R. Bargiela, A. García-Moyano, G. E. K. Bjerga, A. Bollinger, R. Stokke, I. H. Steen, O. V. Golyshina, M. M. Yakimov, K. E. Jaeger, A. F. Yakunin, W. R. Streit, P. N. Golyshin, and M. Ferrer, “Relationships between substrate promiscuity and chiral selectivity of esterases from phylogenetically and environmentally diverse microorganisms,” Catalysts, vol. 8, iss. 1, 2018.
[Bibtex]@article{RN1102_2018, author = {Coscolín, C. and Martínez-Martínez, M. and Chow, J. and Bargiela, R. and García-Moyano, A. and Bjerga, G. E. K. and Bollinger, A. and Stokke, R. and Steen, I. H. and Golyshina, O. V. and Yakimov, M. M. and Jaeger, K. E. and Yakunin, A. F. and Streit, W. R. and Golyshin, P. N. and Ferrer, M.}, title = {Relationships between substrate promiscuity and chiral selectivity of esterases from phylogenetically and environmentally diverse microorganisms}, journal = {Catalysts}, volume = {8}, number = {1}, DOI = {10.3390/catal8010010}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85040635268&doi=10.3390%2fcatal8010010&partnerID=40&md5=2b6833e4e75d069e4badc8164e44db8b}, year = {2018}, type = {Journal Article} } - P. Diep, R. Mahadevan, and A. F. Yakunin, “Heavy metal removal by bioaccumulation using genetically engineered microorganisms,” Frontiers in bioengineering and biotechnology, vol. 6, iss. OCT, 2018.
[Bibtex]@article{RN1147_2018, author = {Diep, P. and Mahadevan, R. and Yakunin, A. F.}, title = {Heavy metal removal by bioaccumulation using genetically engineered microorganisms}, journal = {Frontiers in Bioengineering and Biotechnology}, volume = {6}, number = {OCT}, DOI = {10.3389/fbioe.2018.00157}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85055739211&doi=10.3389%2ffbioe.2018.00157&partnerID=40&md5=b66b99357d28a6aee37e45a864d72031}, year = {2018}, type = {Journal Article} } - J. Gandier and E. R. Master, “Pichia pastoris is a suitable host for the heterologous expression of predicted class i and class ii hydrophobins for discovery, study, and application in biotechnology,” Microorganisms, vol. 6, iss. 1, 2018.
[Bibtex]@article{RN1134_2018, author = {Gandier, Julie-Anne and Master, R. Emma}, title = {Pichia pastoris is a Suitable Host for the Heterologous Expression of Predicted Class I and Class II Hydrophobins for Discovery, Study, and Application in Biotechnology}, journal = {Microorganisms}, volume = {6}, number = {1}, ISSN = {2076-2607}, DOI = {10.3390/microorganisms6010003}, year = {2018}, type = {Journal Article} } - R. E. Goacher, E. J. Braham, C. L. Michienzi, R. M. Flick, A. F. Yakunin, and E. R. Master, “Direct analysis by time-of-flight secondary ion mass spectrometry reveals action of bacterial laccase-mediator systems on both hardwood and softwood samples,” Physiologia plantarum, 2018.
[Bibtex]@article{RN1109_2018, author = {Goacher, R. E. and Braham, E. J. and Michienzi, C. L. and Flick, R. M. and Yakunin, A. F. and Master, E. R.}, title = {Direct analysis by time-of-flight secondary ion mass spectrometry reveals action of bacterial laccase-mediator systems on both hardwood and softwood samples}, journal = {Physiologia Plantarum}, DOI = {10.1111/ppl.12688}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85043512313&doi=10.1111%2fppl.12688&partnerID=40&md5=917db4834f736798cc003d8f4b89dc84}, year = {2018}, type = {Journal Article} } - M. Hajighasemi, A. Tchigvintsev, B. Nocek, R. Flick, A. Popovic, T. Hai, A. N. Khusnutdinova, G. Brown, X. Xu, H. Cui, J. Anstett, T. N. Chernikova, T. Brüls, D. Le Paslier, M. M. Yakimov, A. Joachimiak, O. V. Golyshina, A. Savchenko, P. N. Golyshin, E. A. Edwards, and A. F. Yakunin, “Screening and characterization of novel polyesterases from environmental metagenomes with high hydrolytic activity against synthetic polyesters,” Environmental science and technology, 2018.
[Bibtex]@article{RN1145_2018, author = {Hajighasemi, M. and Tchigvintsev, A. and Nocek, B. and Flick, R. and Popovic, A. and Hai, T. and Khusnutdinova, A. N. and Brown, G. and Xu, X. and Cui, H. and Anstett, J. and Chernikova, T. N. and Brüls, T. and Le Paslier, D. and Yakimov, M. M. and Joachimiak, A. and Golyshina, O. V. and Savchenko, A. and Golyshin, P. N. and Edwards, E. A. and Yakunin, A. F.}, title = {Screening and Characterization of Novel Polyesterases from Environmental Metagenomes with High Hydrolytic Activity against Synthetic Polyesters}, journal = {Environmental Science and Technology}, DOI = {10.1021/acs.est.8b04252}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85055530370&doi=10.1021%2facs.est.8b04252&partnerID=40&md5=a262116378366e1e1b48edd90dee98d4}, year = {2018}, type = {Journal Article} } - E. Jurak, H. Suzuki, G. van Erven, J. A. Gandier, P. Wong, K. Chan, C. Y. Ho, Y. Gong, E. Tillier, M. N. Rosso, M. A. Kabel, S. Miyauchi, and E. R. Master, “Dynamics of the phanerochaete carnosa transcriptome during growth on aspen and spruce,” Bmc genomics, vol. 19, iss. 1, p. 815, 2018.
[Bibtex]@article{RN1152_2018, author = {Jurak, E. and Suzuki, H. and van Erven, G. and Gandier, J. A. and Wong, P. and Chan, K. and Ho, C. Y. and Gong, Y. and Tillier, E. and Rosso, M. N. and Kabel, M. A. and Miyauchi, S. and Master, E. R.}, title = {Dynamics of the Phanerochaete carnosa transcriptome during growth on aspen and spruce}, journal = {BMC genomics}, volume = {19}, number = {1}, pages = {815}, DOI = {10.1186/s12864-018-5210-z}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85056556078&doi=10.1186%2fs12864-018-5210-z&partnerID=40&md5=6b51c41032254e0b8da46a765678d71d}, year = {2018}, type = {Journal Article} } - K. Koteva, G. Cox, J. K. Kelso, M. D. Surette, H. L. Zubyk, L. Ejim, P. Stogios, A. Savchenko, D. Sørensen, and G. D. Wright, “Rox, a rifamycin resistance enzyme with an unprecedented mechanism of action,” Cell chemical biology, vol. 25, iss. 4, p. 403-412.e5, 2018.
[Bibtex]@article{RN1132_2018, author = {Koteva, Kalinka and Cox, Georgina and Kelso, Jayne K. and Surette, Matthew D. and Zubyk, Haley L. and Ejim, Linda and Stogios, Peter and Savchenko, Alexei and Sørensen, Dan and Wright, Gerard D.}, title = {Rox, a Rifamycin Resistance Enzyme with an Unprecedented Mechanism of Action}, journal = {Cell Chemical Biology}, volume = {25}, number = {4}, pages = {403-412.e5}, ISSN = {2451-9456}, DOI = {https://doi.org/10.1016/j.chembiol.2018.01.009}, url = {http://www.sciencedirect.com/science/article/pii/S245194561830031X}, year = {2018}, type = {Journal Article} } - B. Maccormick, T. V. Vuong, and E. R. Master, “Chemo-enzymatic synthesis of clickable xylo-oligosaccharide monomers from hardwood 4-o-methylglucuronoxylan,” Biomacromolecules, vol. 19, iss. 2, pp. 521-530, 2018.
[Bibtex]@article{RN1107_2018, author = {Maccormick, B. and Vuong, T. V. and Master, E. R.}, title = {Chemo-enzymatic Synthesis of Clickable Xylo-oligosaccharide Monomers from Hardwood 4-O-Methylglucuronoxylan}, journal = {Biomacromolecules}, volume = {19}, number = {2}, pages = {521-530}, DOI = {10.1021/acs.biomac.7b01642}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85041924328&doi=10.1021%2facs.biomac.7b01642&partnerID=40&md5=95c7c81d64e6aaa5af861559d4d7f93d}, year = {2018}, type = {Journal Article} } - M. J. Maurício da Fonseca, E. Jurak, K. Kataja, E. R. Master, J. G. Berrin, I. Stals, T. Desmet, A. Van Landschoot, and Y. Briers, “Analysis of the substrate specificity of α-l-arabinofuranosidases by dna sequencer-aided fluorophore-assisted carbohydrate electrophoresis,” Applied microbiology and biotechnology, 2018.
[Bibtex]@article{RN1143_2018, author = {Maurício da Fonseca, M. J. and Jurak, E. and Kataja, K. and Master, E. R. and Berrin, J. G. and Stals, I. and Desmet, T. and Van Landschoot, A. and Briers, Y.}, title = {Analysis of the substrate specificity of α-L-arabinofuranosidases by DNA sequencer-aided fluorophore-assisted carbohydrate electrophoresis}, journal = {Applied Microbiology and Biotechnology}, DOI = {10.1007/s00253-018-9389-3}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85054188828&doi=10.1007%2fs00253-018-9389-3&partnerID=40&md5=dd091c1809a5a6468b389f414a30bcd5}, year = {2018}, type = {Journal Article} } - E. J. T. McGee and L. L. Diosady, “Prevention of iron-polyphenol complex formation by chelation in black tea,” Lwt – food science and technology, vol. 89, pp. 756-762, 2018.
[Bibtex]@article{RN1095_2018, author = {McGee, E. J. T. and Diosady, L. L.}, title = {Prevention of iron-polyphenol complex formation by chelation in black tea}, journal = {LWT - Food Science and Technology}, volume = {89}, pages = {756-762}, DOI = {10.1016/j.lwt.2017.11.041}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85037340205&doi=10.1016%2fj.lwt.2017.11.041&partnerID=40&md5=57c77a4c2b53d9552b55017de8a51b68}, year = {2018}, type = {Journal Article} } - T. Meyer, P. Amin, D. G. Allen, and H. Tran, “Dewatering of pulp and paper mill biosludge and primary sludge,” Journal of environmental chemical engineering, vol. 6, iss. 5, pp. 6317-6321, 2018.
[Bibtex]@article{RN1157_2018, author = {Meyer, T. and Amin, P. and Allen, D. G. and Tran, H.}, title = {Dewatering of pulp and paper mill biosludge and primary sludge}, journal = {Journal of Environmental Chemical Engineering}, volume = {6}, number = {5}, pages = {6317-6321}, DOI = {10.1016/j.jece.2018.09.037}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85054600364&doi=10.1016%2fj.jece.2018.09.037&partnerID=40&md5=d03764cdd62786e342eb3f9939939b50}, year = {2018}, type = {Journal Article} } - O. Molenda, S. Tang, L. Lomheim, V. K. Gautam, S. Lemak, A. F. Yakunin, K. L. Maxwell, and E. A. Edwards, “Extrachromosomal circular elements targeted by crispr-cas in dehalococcoides mccartyi are linked to mobilization of reductive dehalogenase genes,” The isme journal, 2018.
[Bibtex]@article{RN1130_2018, author = {Molenda, Olivia and Tang, Shuiquan and Lomheim, Line and Gautam, Vasu K. and Lemak, Sofia and Yakunin, Alexander F. and Maxwell, Karen L. and Edwards, Elizabeth A.}, title = {Extrachromosomal circular elements targeted by CRISPR-Cas in Dehalococcoides mccartyi are linked to mobilization of reductive dehalogenase genes}, journal = {The ISME Journal}, ISSN = {1751-7370}, DOI = {10.1038/s41396-018-0254-2}, url = {https://doi.org/10.1038/s41396-018-0254-2}, year = {2018}, type = {Journal Article} } - K. Nemr, J. E. N. Müller, J. C. Joo, P. Gawand, R. Choudhary, B. Mendonca, S. Lu, X. Yu, A. F. Yakunin, and R. Mahadevan, “Engineering a short, aldolase-based pathway for (r)-1,3-butanediol production in escherichia coli,” Metabolic engineering, vol. 48, pp. 13-24, 2018.
[Bibtex]@article{RN1121_2018, author = {Nemr, K. and Müller, J. E. N. and Joo, J. C. and Gawand, P. and Choudhary, R. and Mendonca, B. and Lu, S. and Yu, X. and Yakunin, A. F. and Mahadevan, R.}, title = {Engineering a short, aldolase-based pathway for (R)-1,3-butanediol production in Escherichia coli}, journal = {Metabolic Engineering}, volume = {48}, pages = {13-24}, DOI = {10.1016/j.ymben.2018.04.013}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85047253589&doi=10.1016%2fj.ymben.2018.04.013&partnerID=40&md5=e3f2563aa80421f5f4ffb013914963d1}, year = {2018}, type = {Journal Article} } - B. P. Nocek, A. N. Khusnutdinova, M. Ruszkowski, R. Flick, M. Burda, K. Batyrova, G. Brown, A. Mucha, A. Joachimiak, L. Berlicki, and A. F. Yakunin, “Structural insights into substrate selectivity and activity of bacterial polyphosphate kinases,” Acs catalysis, 2018.
[Bibtex]@article{RN1139_2018, author = {Nocek, Boguslaw P. and Khusnutdinova, Anna N. and Ruszkowski, Milosz and Flick, Robert and Burda, Malgorzata and Batyrova, Khorcheska and Brown, Greg and Mucha, Artur and Joachimiak, Andrzej and Berlicki, Lukasz and Yakunin, Alexander F.}, title = {Structural insights into substrate selectivity and activity of bacterial polyphosphate kinases}, journal = {ACS Catalysis}, DOI = {10.1021/acscatal.8b03151}, url = {https://doi.org/10.1021/acscatal.8b03151}, year = {2018}, type = {Journal Article} } - B. P. Nocek, A. N. Khusnutdinova, M. Ruszkowski, R. Flick, M. Burda, K. Batyrova, G. Brown, A. Mucha, A. Joachimiak, L. Berlicki, and A. F. Yakunin, “Structural insights into substrate selectivity and activity of bacterial polyphosphate kinases,” Acs catalysis, vol. 8, iss. 11, pp. 10746-10760, 2018.
[Bibtex]@article{RN1148_2018, author = {Nocek, B. P. and Khusnutdinova, A. N. and Ruszkowski, M. and Flick, R. and Burda, M. and Batyrova, K. and Brown, G. and Mucha, A. and Joachimiak, A. and Berlicki, L. and Yakunin, A. F.}, title = {Structural Insights into Substrate Selectivity and Activity of Bacterial Polyphosphate Kinases}, journal = {ACS Catalysis}, volume = {8}, number = {11}, pages = {10746-10760}, DOI = {10.1021/acscatal.8b03151}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85055645259&doi=10.1021%2facscatal.8b03151&partnerID=40&md5=c806ffcfceb2677549ce337f0c7e26fb}, year = {2018}, type = {Journal Article} } - A. C. Pawlowski, P. J. Stogios, K. Koteva, T. Skarina, E. Evdokimova, A. Savchenko, and G. D. Wright, “The evolution of substrate discrimination in macrolide antibiotic resistance enzymes,” Nature communications, vol. 9, iss. 1, p. 112, 2018.
[Bibtex]@article{RN1133_2018, author = {Pawlowski, Andrew C. and Stogios, Peter J. and Koteva, Kalinka and Skarina, Tatiana and Evdokimova, Elena and Savchenko, Alexei and Wright, Gerard D.}, title = {The evolution of substrate discrimination in macrolide antibiotic resistance enzymes}, journal = {Nature Communications}, volume = {9}, number = {1}, pages = {112}, ISSN = {2041-1723}, DOI = {10.1038/s41467-017-02680-0}, url = {https://doi.org/10.1038/s41467-017-02680-0}, year = {2018}, type = {Journal Article} } - A. Pérez-de-Mora, A. Lacourt, M. L. McMaster, X. Liang, S. M. Dworatzek, and E. A. Edwards, “Chlorinated electron acceptor abundance drives selection of dehalococcoides mccartyi (d. mccartyi) strains in dechlorinating enrichment cultures and groundwater environments,” Frontiers in microbiology, vol. 9, iss. MAY, 2018.
[Bibtex]@article{RN1120_2018, author = {Pérez-de-Mora, A. and Lacourt, A. and McMaster, M. L. and Liang, X. and Dworatzek, S. M. and Edwards, E. A.}, title = {Chlorinated electron acceptor abundance drives selection of Dehalococcoides mccartyi (D. mccartyi) strains in dechlorinating enrichment cultures and groundwater environments}, journal = {Frontiers in Microbiology}, volume = {9}, number = {MAY}, DOI = {10.3389/fmicb.2018.00812}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85047150128&doi=10.3389%2ffmicb.2018.00812&partnerID=40&md5=0cdd3bc53b4313448b19fec645e70f16}, year = {2018}, type = {Journal Article} } - J. C. H. Poon, Z. Liao, T. Suzuki, M. M. Carleton, J. P. Soleas, J. S. Aitchison, G. Karoubi, A. P. McGuigan, and T. K. Waddell, “Design of biomimetic substrates for long-term maintenance of alveolar epithelial cells,” Biomaterials science, vol. 6, iss. 2, pp. 292-303, 2018.
[Bibtex]@article{RN1103_2018, author = {Poon, J. C. H. and Liao, Z. and Suzuki, T. and Carleton, M. M. and Soleas, J. P. and Aitchison, J. S. and Karoubi, G. and McGuigan, A. P. and Waddell, T. K.}, title = {Design of biomimetic substrates for long-term maintenance of alveolar epithelial cells}, journal = {Biomaterials Science}, volume = {6}, number = {2}, pages = {292-303}, DOI = {10.1039/c7bm00647k}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85041332252&doi=10.1039%2fc7bm00647k&partnerID=40&md5=debc0b39bd89db1afd8368ce0e76bf4d}, year = {2018}, type = {Journal Article} } - W. Qiao, F. Luo, L. Lomheim, E. E. Mack, S. Ye, J. Wu, and E. A. Edwards, “A dehalogenimonas population respires 1,2,4-trichlorobenzene and dichlorobenzenes,” Environmental science & technology, vol. 52, iss. 22, pp. 13391-13398, 2018.
[Bibtex]@article{RN1151_2018, author = {Qiao, W. and Luo, F. and Lomheim, L. and Mack, E. E. and Ye, S. and Wu, J. and Edwards, E. A.}, title = {A Dehalogenimonas Population Respires 1,2,4-Trichlorobenzene and Dichlorobenzenes}, journal = {Environmental science & technology}, volume = {52}, number = {22}, pages = {13391-13398}, DOI = {10.1021/acs.est.8b04239}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85056731278&doi=10.1021%2facs.est.8b04239&partnerID=40&md5=2b2d33e492cbcb2401df6112e3672eb3}, year = {2018}, type = {Journal Article} } - A. T. Quaile, P. J. Stogios, O. Egorova, E. Evdokimova, D. Valleau, B. Nocek, P. S. Kompella, S. Peisajovich, A. F. Yakunin, A. W. Ensminger, and A. Savchenko, “The legionella pneumophila effector ceg4 is a phosphotyrosine phosphatase that attenuates activation of eukaryotic mapk pathways,” Journal of biological chemistry, vol. 293, iss. 9, pp. 3307-3320, 2018.
[Bibtex]@article{RN1123_2018, author = {Quaile, A. T. and Stogios, P. J. and Egorova, O. and Evdokimova, E. and Valleau, D. and Nocek, B. and Kompella, P. S. and Peisajovich, S. and Yakunin, A. F. and Ensminger, A. W. and Savchenko, A.}, title = {The Legionella pneumophila effector Ceg4 is a phosphotyrosine phosphatase that attenuates activation of eukaryotic MAPK pathways}, journal = {Journal of Biological Chemistry}, volume = {293}, number = {9}, pages = {3307-3320}, DOI = {10.1074/jbc.M117.812727}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85042920908&doi=10.1074%2fjbc.M117.812727&partnerID=40&md5=4a3a2c0561cd1228bc4c48afa8a0a7fb}, year = {2018}, type = {Journal Article} } - K. Raj, S. Partow, K. Correia, A. N. Khusnutdinova, A. F. Yakunin, and R. Mahadevan, “Biocatalytic production of adipic acid from glucose using engineered saccharomyces cerevisiae,” Metabolic engineering communications, vol. 6, pp. 28-32, 2018.
[Bibtex]@article{RN1105_2018, author = {Raj, Kaushik and Partow, Siavash and Correia, Kevin and Khusnutdinova, Anna N. and Yakunin, Alexander F. and Mahadevan, Radhakrishnan}, title = {Biocatalytic production of adipic acid from glucose using engineered Saccharomyces cerevisiae}, journal = {Metabolic Engineering Communications}, volume = {6}, pages = {28-32}, ISSN = {2214-0301}, DOI = {https://doi.org/10.1016/j.meteno.2018.02.001}, url = {https://www.sciencedirect.com/science/article/pii/S2214030117300275}, year = {2018}, type = {Journal Article} } - F. M. Razeq, E. Jurak, P. J. Stogios, R. Yan, M. Tenkanen, M. A. Kabel, W. Wang, and E. R. Master, “A novel acetyl xylan esterase enabling complete deacetylation of substituted xylans,” Biotechnology for biofuels, vol. 11, iss. 1, p. 74, 2018.
[Bibtex]@article{RN1111_2018, author = {Razeq, Fakhria M. and Jurak, Edita and Stogios, Peter J. and Yan, Ruoyu and Tenkanen, Maija and Kabel, Mirjam A. and Wang, Weijun and Master, Emma R.}, title = {A novel acetyl xylan esterase enabling complete deacetylation of substituted xylans}, journal = {Biotechnology for Biofuels}, volume = {11}, number = {1}, pages = {74}, ISSN = {1754-6834}, DOI = {10.1186/s13068-018-1074-3}, url = {https://doi.org/10.1186/s13068-018-1074-3}, year = {2018}, type = {Journal Article} } - D. Rodenhizer, T. Dean, E. D’Arcangelo, and A. P. McGuigan, “The current landscape of 3d in vitro tumor models: what cancer hallmarks are accessible for drug discovery?,” Advanced healthcare materials, 2018.
[Bibtex]@article{RN1100_2018, author = {Rodenhizer, D. and Dean, T. and D'Arcangelo, E. and McGuigan, A. P.}, title = {The Current Landscape of 3D In Vitro Tumor Models: What Cancer Hallmarks Are Accessible for Drug Discovery?}, journal = {Advanced Healthcare Materials}, DOI = {10.1002/adhm.201701174}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85040729482&doi=10.1002%2fadhm.201701174&partnerID=40&md5=38661a7311b6278714e085b43f1cb9eb}, year = {2018}, type = {Journal Article} } - D. Rodenhizer, T. Dean, B. Xu, D. Cojocari, and A. P. McGuigan, “A three-dimensional engineered heterogeneous tumor model for assessing cellular environment and response,” Nature protocols, vol. 13, iss. 9, pp. 1917-1957, 2018.
[Bibtex]@article{RN1137_2018, author = {Rodenhizer, D. and Dean, T. and Xu, B. and Cojocari, D. and McGuigan, A. P.}, title = {A three-dimensional engineered heterogeneous tumor model for assessing cellular environment and response}, journal = {Nature Protocols}, volume = {13}, number = {9}, pages = {1917-1957}, DOI = {10.1038/s41596-018-0022-9}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85053302182&doi=10.1038%2fs41596-018-0022-9&partnerID=40&md5=0491e410c10268f66f35be2dac82800e}, year = {2018}, type = {Journal Article} } - Y. K. Salkuyeh, B. A. Saville, and H. L. MacLean, “Techno-economic analysis and life cycle assessment of hydrogen production from different biomass gasification processes,” International journal of hydrogen energy, 2018.
[Bibtex]@article{RN1118_2018, author = {Salkuyeh, Yaser Khojasteh and Saville, Bradley A. and MacLean, Heather L.}, title = {Techno-economic analysis and life cycle assessment of hydrogen production from different biomass gasification processes}, journal = {International Journal of Hydrogen Energy}, ISSN = {0360-3199}, DOI = {https://doi.org/10.1016/j.ijhydene.2018.04.024}, url = {http://www.sciencedirect.com/science/article/pii/S0360319918311182}, year = {2018}, type = {Journal Article} } - B. A. Saville and S. Saville, “Xylooligosaccharidesand arabinoxylanoligosaccharides and their application as prebiotics,” Applied food biotechnology, vol. 5, iss. 3, pp. 121-130, 2018.
[Bibtex]@article{RN1125_2018, author = {Saville, B. A. and Saville, S.}, title = {Xylooligosaccharidesand arabinoxylanoligosaccharides and their application as prebiotics}, journal = {Applied Food Biotechnology}, volume = {5}, number = {3}, pages = {121-130}, DOI = {10.22037/afb.v%vi%i.20212}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85049595875&doi=10.22037%2fafb.v%25vi%25i.20212&partnerID=40&md5=98f381d424e059133c2a7215a0678f39}, year = {2018}, type = {Journal Article} } - S. Saville and B. A. Saville, “High fiber cane: pathway to a novel xylooligosaccharide prebiotic and human health,” Agro food industry hi-tech, vol. 29, iss. 6, pp. 36-38, 2018.
[Bibtex]@article{RN1166_2018, author = {Saville, S. and Saville, B. A.}, title = {High fiber cane: Pathway to a novel xylooligosaccharide prebiotic and human health}, journal = {Agro Food Industry Hi-Tech}, volume = {29}, number = {6}, pages = {36-38}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85063183169&partnerID=40&md5=d55f71fd6cfc60bc1adfa25d8cd523fe}, year = {2018}, type = {Journal Article} } - S. Sinichi and L. L. Diosady, “Recovery and recycling of isopropyl alcohol used in biodiesel production from yellow mustard oil,” Jaocs, journal of the american oil chemists’ society, vol. 95, iss. 6, pp. 753-765, 2018.
[Bibtex]@article{RN1127_2018, author = {Sinichi, S. and Diosady, L. L.}, title = {Recovery and Recycling of Isopropyl Alcohol Used in Biodiesel Production From Yellow Mustard Oil}, journal = {JAOCS, Journal of the American Oil Chemists' Society}, volume = {95}, number = {6}, pages = {753-765}, DOI = {10.1002/aocs.12064}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85049050661&doi=10.1002%2faocs.12064&partnerID=40&md5=e6bc30a02e43a327848319c22c5db380}, year = {2018}, type = {Journal Article} } - S. Sinichi and L. L. Diosady, “Salting out versus pervaporation in ipa recovery system,” International news on fats, oils and related materials, vol. 29, iss. 9, pp. 23-26, 2018.
[Bibtex]@article{RN1153_2018, author = {Sinichi, S. and Diosady, L. L.}, title = {Salting out versus pervaporation in IPA recovery system}, journal = {International News on Fats, Oils and Related Materials}, volume = {29}, number = {9}, pages = {23-26}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85056336264&partnerID=40&md5=acf6d58f2a810d412f72547169eaa7fa}, year = {2018}, type = {Journal Article} } - S. Sinichi, A. V. L. Siañez, and L. L. Diosady, “Recovery of phenolic compounds from the by-products of yellow mustard protein isolation,” Food research international, 2018.
[Bibtex]@article{RN1142_2018, author = {Sinichi, S. and Siañez, A. V. L. and Diosady, L. L.}, title = {Recovery of phenolic compounds from the by-products of yellow mustard protein isolation}, journal = {Food Research International}, DOI = {10.1016/j.foodres.2018.10.047}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85055128582&doi=10.1016%2fj.foodres.2018.10.047&partnerID=40&md5=1da400a9735c4d191e51b8d457a59a3f}, year = {2018}, type = {Journal Article} } - P. J. Stogios, G. Cox, H. L. Zubyk, E. Evdokimova, Z. Wawrzak, G. D. Wright, and A. Savchenko, “Substrate recognition by a colistin resistance enzyme from moraxella catarrhalis,” Acs chemical biology, vol. 13, iss. 5, pp. 1322-1332, 2018.
[Bibtex]@article{RN1122_2018, author = {Stogios, P. J. and Cox, G. and Zubyk, H. L. and Evdokimova, E. and Wawrzak, Z. and Wright, G. D. and Savchenko, A.}, title = {Substrate Recognition by a Colistin Resistance Enzyme from Moraxella catarrhalis}, journal = {ACS Chemical Biology}, volume = {13}, number = {5}, pages = {1322-1332}, DOI = {10.1021/acschembio.8b00116}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85047501291&doi=10.1021%2facschembio.8b00116&partnerID=40&md5=524fcbdaf69c4668b9f524281540c6dc}, year = {2018}, type = {Journal Article} } - D. Valleau, D. J. Little, D. Borek, T. Skarina, A. T. Quaile, R. Di Leo, S. Houliston, A. Lemak, C. H. Arrowsmith, B. K. Coombes, and A. Savchenko, “Functional diversification of the nleg effector family in enterohemorrhagic <em>escherichia coli</em>,” Proceedings of the national academy of sciences, 2018.
[Bibtex]@article{RN1136_2018, author = {Valleau, Dylan and Little, Dustin J. and Borek, Dominika and Skarina, Tatiana and Quaile, Andrew T. and Di Leo, Rosa and Houliston, Scott and Lemak, Alexander and Arrowsmith, Cheryl H. and Coombes, Brian K. and Savchenko, Alexei}, title = {Functional diversification of the NleG effector family in enterohemorrhagic <em>Escherichia coli</em>}, journal = {Proceedings of the National Academy of Sciences}, url = {http://www.pnas.org/content/early/2018/09/13/1718350115.abstract}, year = {2018}, type = {Journal Article} } - D. Valleau, A. T. Quaile, H. Cui, X. Xu, E. Evdokimova, C. Chang, M. E. Cuff, M. L. Urbanus, S. Houliston, C. H. Arrowsmith, A. W. Ensminger, and A. Savchenko, “Discovery of ubiquitin deamidases in the pathogenic arsenal of legionella pneumophila,” Cell reports, vol. 23, iss. 2, pp. 568-583, 2018.
[Bibtex]@article{RN1117_2018, author = {Valleau, Dylan and Quaile, Andrew T. and Cui, Hong and Xu, Xiaohui and Evdokimova, Elena and Chang, Changsoo and Cuff, Marianne E. and Urbanus, Malene L. and Houliston, Scott and Arrowsmith, Cheryl H. and Ensminger, Alexander W. and Savchenko, Alexei}, title = {Discovery of Ubiquitin Deamidases in the Pathogenic Arsenal of Legionella pneumophila}, journal = {Cell Reports}, volume = {23}, number = {2}, pages = {568-583}, ISSN = {2211-1247}, DOI = {https://doi.org/10.1016/j.celrep.2018.03.060}, url = {https://www.sciencedirect.com/science/article/pii/S2211124718304054}, year = {2018}, type = {Journal Article} } - P. H. Wang, A. N. Khusnutdinova, F. Luo, J. Xiao, K. Nemr, R. Flick, G. Brown, R. Mahadevan, E. A. Edwards, and A. F. Yakunin, “Biosynthesis and activity of prenylated fmn cofactors,” Cell chemical biology, 2018.
[Bibtex]@article{RN1119_2018, author = {Wang, P. H. and Khusnutdinova, A. N. and Luo, F. and Xiao, J. and Nemr, K. and Flick, R. and Brown, G. and Mahadevan, R. and Edwards, E. A. and Yakunin, A. F.}, title = {Biosynthesis and Activity of Prenylated FMN Cofactors}, journal = {Cell Chemical Biology}, DOI = {10.1016/j.chembiol.2018.02.007}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85045909652&doi=10.1016%2fj.chembiol.2018.02.007&partnerID=40&md5=a35319a3baca4ffd69ac729f5d28fc0e}, year = {2018}, type = {Journal Article} } - W. Wang, N. Andric, C. Sarch, B. T. Silva, M. Tenkanen, and E. R. Master, “Constructing arabinofuranosidases for dual arabinoxylan debranching activity,” Biotechnology and bioengineering, vol. 115, iss. 1, pp. 41-49, 2018.
[Bibtex]@article{RN1092_2018, author = {Wang, W. and Andric, N. and Sarch, C. and Silva, B. T. and Tenkanen, M. and Master, E. R.}, title = {Constructing arabinofuranosidases for dual arabinoxylan debranching activity}, journal = {Biotechnology and Bioengineering}, volume = {115}, number = {1}, pages = {41-49}, ISSN = {00063592 (ISSN)}, DOI = {10.1002/bit.26445}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85035033739&doi=10.1002%2fbit.26445&partnerID=40&md5=b7900ba1f1f927207619b29fbb5afd99}, year = {2018}, type = {Journal Article} } - B. Wu, J. Gaskell, B. W. Held, C. Toapanta, T. Vuong, S. Ahrendt, A. Lipzen, J. Zhang, J. S. Schilling, E. Master, I. V. Grigoriev, R. A. Blanchette, D. Cullen, and D. S. Hibbett, “Substrate-specific differential gene expression and rna editing in the brown rot fungus fomitopsis pinicola,” Appl environ microbiol, 2018.
[Bibtex]@article{RN1124_2018, author = {Wu, B. and Gaskell, J. and Held, B. W. and Toapanta, C. and Vuong, T. and Ahrendt, S. and Lipzen, A. and Zhang, J. and Schilling, J. S. and Master, E. and Grigoriev, I. V. and Blanchette, R. A. and Cullen, D. and Hibbett, D. S.}, title = {Substrate-Specific Differential Gene Expression and RNA editing in the Brown Rot Fungus Fomitopsis pinicola}, journal = {Appl Environ Microbiol}, ISSN = {0099-2240}, DOI = {10.1128/aem.00991-18}, year = {2018}, type = {Journal Article} } - Y. F. Xu, W. Lu, J. C. Chen, S. A. Johnson, P. A. Gibney, D. G. Thomas, G. Brown, A. L. May, S. R. Campagna, A. F. Yakunin, D. Botstein, and J. D. Rabinowitz, “Discovery and functional characterization of a yeast sugar alcohol phosphatase,” Acs chemical biology, 2018.
[Bibtex]@article{RN1141_2018, author = {Xu, Y. F. and Lu, W. and Chen, J. C. and Johnson, S. A. and Gibney, P. A. and Thomas, D. G. and Brown, G. and May, A. L. and Campagna, S. R. and Yakunin, A. F. and Botstein, D. and Rabinowitz, J. D.}, title = {Discovery and Functional Characterization of a Yeast Sugar Alcohol Phosphatase}, journal = {ACS Chemical Biology}, DOI = {10.1021/acschembio.8b00804}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85054733885&doi=10.1021%2facschembio.8b00804&partnerID=40&md5=2ba6c263b5276d6367eb496abf6718a8}, year = {2018}, type = {Journal Article} } - M. Young, D. Rodenhizer, T. Dean, E. D’Arcangelo, B. Xu, L. Ailles, and A. P. McGuigan, “A tracer 3d co-culture tumour model for head and neck cancer,” Biomaterials, vol. 164, pp. 54-69, 2018.
[Bibtex]@article{RN1108_2018, author = {Young, M. and Rodenhizer, D. and Dean, T. and D'Arcangelo, E. and Xu, B. and Ailles, L. and McGuigan, A. P.}, title = {A TRACER 3D Co-Culture tumour model for head and neck cancer}, journal = {Biomaterials}, volume = {164}, pages = {54-69}, DOI = {10.1016/j.biomaterials.2018.01.038}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85042418249&doi=10.1016%2fj.biomaterials.2018.01.038&partnerID=40&md5=6b94feb5f70c1ceea1f4702f576b92c9}, year = {2018}, type = {Journal Article} }
2017
- M. Andberg, F. Mollerup, K. Parikka, S. Koutaniemi, H. Boer, M. Juvonen, E. Master, M. Tenkanen, and K. Kruus, “A novel colletotrichum graminicola raffinose oxidase in the aa5 family,” Applied and environmental microbiology, vol. 83, iss. 20, 2017.
[Bibtex]@article{RN1068_2017, author = {Andberg, M. and Mollerup, F. and Parikka, K. and Koutaniemi, S. and Boer, H. and Juvonen, M. and Master, E. and Tenkanen, M. and Kruus, K.}, title = {A novel Colletotrichum graminicola raffinose oxidase in the AA5 family}, journal = {Applied and Environmental Microbiology}, volume = {83}, number = {20}, DOI = {10.1128/AEM.01383-17}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85030697826&doi=10.1128%2fAEM.01383-17&partnerID=40&md5=5622c0d4a1efa25df1403582d46940e2}, year = {2017}, type = {Journal Article} } - Y. Azimi, Y. Liu, T. C. Tan, D. G. Allen, and R. R. Farnood, “The tail of two models: impact of circularity and biomass non-homogeneity on uv disinfection of wastewater flocs,” Water research, vol. 126, pp. 70-78, 2017.
[Bibtex]@article{RN1066_2017, author = {Azimi, Y. and Liu, Y. and Tan, T. C. and Allen, D. G. and Farnood, R. R.}, title = {The tail of two models: Impact of circularity and biomass non-homogeneity on UV disinfection of wastewater flocs}, journal = {Water Research}, volume = {126}, pages = {70-78}, DOI = {10.1016/j.watres.2017.09.011}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85029393081&doi=10.1016%2fj.watres.2017.09.011&partnerID=40&md5=a92d3cb86183d4dcbd3e449a73eaff8d}, year = {2017}, type = {Journal Article} } - P. L. Chu, C. Vanderghem, H. L. MacLean, and B. A. Saville, “Process modeling of hydrodeoxygenation to produce renewable jet fuel and other hydrocarbon fuels,” Fuel, vol. 196, pp. 298-305, 2017.
[Bibtex]@article{RN1038_2017, author = {Chu, P. L. and Vanderghem, C. and MacLean, H. L. and Saville, B. A.}, title = {Process modeling of hydrodeoxygenation to produce renewable jet fuel and other hydrocarbon fuels}, journal = {Fuel}, volume = {196}, pages = {298-305}, DOI = {10.1016/j.fuel.2017.01.097}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85012074001&doi=10.1016%2fj.fuel.2017.01.097&partnerID=40&md5=ba31d4d1c68e0bc7ac1dc644294d4e2a}, year = {2017}, type = {Journal Article} } - M. A. Currie, G. Brown, A. Wong, T. Ohira, K. Sugiyama, T. Suzuki, A. F. Yakunin, and Z. Jia, “Structural and functional characterization of the tyw3/taw3 class of sam-dependent methyltransferases,” Rna, vol. 23, iss. 3, pp. 346-354, 2017.
[Bibtex]@article{RN1043_2017, author = {Currie, M. A. and Brown, G. and Wong, A. and Ohira, T. and Sugiyama, K. and Suzuki, T. and Yakunin, A. F. and Jia, Z.}, title = {Structural and functional characterization of the TYW3/Taw3 class of SAM-dependent methyltransferases}, journal = {RNA}, volume = {23}, number = {3}, pages = {346-354}, DOI = {10.1261/rna.057943}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85015258335&doi=10.1261%2frna.057943&partnerID=40&md5=71e93b5d3a5d53ab68fb232f009473b6}, year = {2017}, type = {Journal Article} } - V. Dueik, B. K. Chen, and L. L. Diosady, “Iron-polyphenol interaction reduces iron bioavailability in fortified tea: competing complexation to ensure iron bioavailability,” Journal of food quality, vol. 2017, 2017.
[Bibtex]@article{RN1062_2017, author = {Dueik, V. and Chen, B. K. and Diosady, L. L.}, title = {Iron-polyphenol interaction reduces iron bioavailability in fortified tea: Competing complexation to ensure iron bioavailability}, journal = {Journal of Food Quality}, volume = {2017}, DOI = {10.1155/2017/1805047}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85025447364&doi=10.1155%2f2017%2f1805047&partnerID=40&md5=f722f70cfe99ef9139e065dbfbbbda89}, year = {2017}, type = {Journal Article} } - J. A. Gandier, D. N. Langelaan, A. Won, K. O’Donnell, J. L. Grondin, H. L. Spencer, P. Wong, E. Tillier, C. Yip, S. P. Smith, and E. R. Master, “Characterization of a basidiomycota hydrophobin reveals the structural basis for a high-similarity class i subdivision,” Scientific reports, vol. 7, 2017.
[Bibtex]@article{RN1046_2017, author = {Gandier, J. A. and Langelaan, D. N. and Won, A. and O'Donnell, K. and Grondin, J. L. and Spencer, H. L. and Wong, P. and Tillier, E. and Yip, C. and Smith, S. P. and Master, E. R.}, title = {Characterization of a Basidiomycota hydrophobin reveals the structural basis for a high-similarity Class I subdivision}, journal = {Scientific Reports}, volume = {7}, DOI = {10.1038/srep45863}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85017303568&doi=10.1038%2fsrep45863&partnerID=40&md5=3ecff951be81e92f69f085d95eeb24d9}, year = {2017}, type = {Journal Article} } - S. Garg, K. Judd, R. Mahadevan, E. Edwards, and V. G. Papangelakis, “Leaching characteristics of nickeliferous pyrrhotite tailings from the sudbury, ontario area,” Canadian metallurgical quarterly, pp. 1-10, 2017.
[Bibtex]@article{RN1070_2017, author = {Garg, Srinath and Judd, Kurtis and Mahadevan, Radhakrishnan and Edwards, Elizabeth and Papangelakis, Vladimiros G.}, title = {Leaching characteristics of nickeliferous pyrrhotite tailings from the Sudbury, Ontario area}, journal = {Canadian Metallurgical Quarterly}, pages = {1-10}, ISSN = {0008-4433}, DOI = {10.1080/00084433.2017.1361162}, url = {http://dx.doi.org/10.1080/00084433.2017.1361162}, year = {2017}, type = {Journal Article} } - S. Garg, V. Papangelakis, E. Edwards, and R. Mahadevan, “Application of a selective dissolution protocol to quantify the terminal dissolution extents of pyrrhotite and pentlandite from pyrrhotite tailings,” International journal of mineral processing, vol. 158, pp. 27-34, 2017.
[Bibtex]@article{RN380_2017, author = {Garg, S. and Papangelakis, V. and Edwards, E. and Mahadevan, R.}, title = {Application of a selective dissolution protocol to quantify the terminal dissolution extents of pyrrhotite and pentlandite from pyrrhotite tailings}, journal = {International Journal of Mineral Processing}, volume = {158}, pages = {27-34}, ISSN = {03017516 (ISSN)}, DOI = {10.1016/j.minpro.2016.11.004}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84997610874&doi=10.1016%2fj.minpro.2016.11.004&partnerID=40&md5=7d66b41934fd4c344be51e45d2c77aa6}, year = {2017}, type = {Journal Article} } - J. Gaskell, P. Kersten, L. F. Larrondo, P. Canessa, D. Martinez, D. Hibbett, M. Schmoll, C. P. Kubicek, A. T. Martinez, J. Yadav, E. Master, J. K. Magnuson, D. Yaver, R. Berka, K. Lail, C. Chen, K. LaButti, M. Nolan, A. Lipzen, A. Aerts, R. Riley, K. Barry, B. Henrissat, R. Blanchette, I. V. Grigoriev, and D. Cullen, “Draft genome sequence of a monokaryotic model brown-rot fungus postia (rhodonia) placenta sb12,” Genomics data, vol. 14, pp. 21-23, 2017.
[Bibtex]@article{RN1091_2017, author = {Gaskell, J. and Kersten, P. and Larrondo, L. F. and Canessa, P. and Martinez, D. and Hibbett, D. and Schmoll, M. and Kubicek, C. P. and Martinez, A. T. and Yadav, J. and Master, E. and Magnuson, J. K. and Yaver, D. and Berka, R. and Lail, K. and Chen, C. and LaButti, K. and Nolan, M. and Lipzen, A. and Aerts, A. and Riley, R. and Barry, K. and Henrissat, B. and Blanchette, R. and Grigoriev, I. V. and Cullen, D.}, title = {Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12}, journal = {Genomics Data}, volume = {14}, pages = {21-23}, ISSN = {22135960 (ISSN)}, DOI = {10.1016/j.gdata.2017.08.003}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85034456080&doi=10.1016%2fj.gdata.2017.08.003&partnerID=40&md5=871512b76e3445c033bf6862acb1a496}, year = {2017}, type = {Journal Article} } - R. E. Goacher, E. J. Braham, C. L. Michienzi, R. M. Flick, A. F. Yakunin, and E. R. Master, “Direct analysis by time-of-flight secondary ion mass spectrometry (tof-sims) reveals action of bacterial laccase-mediator system on both hardwood and softwood samples,” Physiol plant, 2017.
[Bibtex]@article{RN1097_2017, author = {Goacher, R. E. and Braham, E. J. and Michienzi, C. L. and Flick, R. M. and Yakunin, A. F. and Master, E. R.}, title = {Direct analysis by Time-of-Flight Secondary Ion Mass Spectrometry (ToF-SIMS) reveals action of bacterial laccase-mediator system on both hardwood and softwood samples}, journal = {Physiol Plant}, ISSN = {0031-9317}, DOI = {10.1111/ppl.12688}, year = {2017}, type = {Journal Article} } - O. V. Golyshina, H. Tran, O. N. Reva, S. Lemak, A. F. Yakunin, A. Goesmann, T. Y. Nechitaylo, V. Lacono, F. Smedile, A. Slesarev, D. Rojo, C. Barbas, M. Ferrer, M. M. Yakimov, and P. N. Golyshin, “Metabolic and evolutionary patterns in the extremely acidophilic archaeon ferroplasma acidiphilum yt,” Scientific reports, vol. 7, iss. 1, 2017.
[Bibtex]@article{RN1057_2017, author = {Golyshina, O. V. and Tran, H. and Reva, O. N. and Lemak, S. and Yakunin, A. F. and Goesmann, A. and Nechitaylo, T. Y. and Lacono, V. and Smedile, F. and Slesarev, A. and Rojo, D. and Barbas, C. and Ferrer, M. and Yakimov, M. M. and Golyshin, P. N.}, title = {Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum YT}, journal = {Scientific Reports}, volume = {7}, number = {1}, DOI = {10.1038/s41598-017-03904-5}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85020945306&doi=10.1038%2fs41598-017-03904-5&partnerID=40&md5=29d08d35bd8fd68563dc67b2ab8e9929}, year = {2017}, type = {Journal Article} } - S. Javaherian, E. D’Arcangelo, B. Slater, C. Londono, B. Xu, and A. P. McGuigan, “Modulation of cellular polarization and migration by ephrin/eph signal-mediated boundary formation,” Integrative biology (united kingdom), vol. 9, iss. 12, pp. 934-946, 2017.
[Bibtex]@article{RN1096_2017, author = {Javaherian, S. and D'Arcangelo, E. and Slater, B. and Londono, C. and Xu, B. and McGuigan, A. P.}, title = {Modulation of cellular polarization and migration by ephrin/Eph signal-mediated boundary formation}, journal = {Integrative Biology (United Kingdom)}, volume = {9}, number = {12}, pages = {934-946}, DOI = {10.1039/c7ib00176b}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85038391615&doi=10.1039%2fc7ib00176b&partnerID=40&md5=4c6ab701d84cd390b511e19d8e1aff63}, year = {2017}, type = {Journal Article} } - J. C. Joo, A. N. Khusnutdinova, R. Flick, T. Kim, U. T. Bornscheuer, A. F. Yakunin, and R. Mahadevan, “Alkene hydrogenation activity of enoate reductases for an environmentally benign biosynthesis of adipic acid,” Chemical science, vol. 8, iss. 2, pp. 1406-1413, 2017.
[Bibtex]@article{RN1035_2017, author = {Joo, J. C. and Khusnutdinova, A. N. and Flick, R. and Kim, T. and Bornscheuer, U. T. and Yakunin, A. F. and Mahadevan, R.}, title = {Alkene hydrogenation activity of enoate reductases for an environmentally benign biosynthesis of adipic acid}, journal = {Chemical Science}, volume = {8}, number = {2}, pages = {1406-1413}, DOI = {10.1039/c6sc02842j}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85011060324&doi=10.1039%2fc6sc02842j&partnerID=40&md5=0c7711a1c0af3f5a6c8dd337cec21989}, year = {2017}, type = {Journal Article} } - S. Kalami, M. Arefmanesh, E. Master, and M. Nejad, “Replacing 100% of phenol in phenolic adhesive formulations with lignin,” Journal of applied polymer science, 2017.
[Bibtex]@article{RN1047_2017, author = {Kalami, S. and Arefmanesh, M. and Master, E. and Nejad, M.}, title = {Replacing 100% of phenol in phenolic adhesive formulations with lignin}, journal = {Journal of Applied Polymer Science}, DOI = {10.1002/app.45124}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85017525475&doi=10.1002%2fapp.45124&partnerID=40&md5=c0e60f869bc8d704b74f16b9cd4acba0}, year = {2017}, type = {Journal Article} } - Y. Khojasteh Salkuyeh, B. A. Saville, and H. L. MacLean, “Techno-economic analysis and life cycle assessment of hydrogen production from natural gas using current and emerging technologies,” International journal of hydrogen energy, 2017.
[Bibtex]@article{RN1058_2017, author = {Khojasteh Salkuyeh, Y. and Saville, B. A. and MacLean, H. L.}, title = {Techno-economic analysis and life cycle assessment of hydrogen production from natural gas using current and emerging technologies}, journal = {International Journal of Hydrogen Energy}, DOI = {10.1016/j.ijhydene.2017.05.219}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85023745004&doi=10.1016%2fj.ijhydene.2017.05.219&partnerID=40&md5=abd332d154c4d92a47e04f33ce8e5423}, year = {2017}, type = {Journal Article} } - A. N. Khusnutdinova, R. Flick, A. Popovic, G. Brown, A. Tchigvintsev, B. Nocek, K. Correia, J. C. Joo, R. Mahadevan, and A. F. Yakunin, “Exploring bacterial carboxylate reductases for the reduction of bifunctional carboxylic acids,” Biotechnol j, 2017.
[Bibtex]@article{RN1072_2017, author = {Khusnutdinova, A. N. and Flick, R. and Popovic, A. and Brown, G. and Tchigvintsev, A. and Nocek, B. and Correia, K. and Joo, J. C. and Mahadevan, R. and Yakunin, A. F.}, title = {Exploring Bacterial Carboxylate Reductases for the Reduction of Bifunctional Carboxylic Acids}, journal = {Biotechnol J}, ISSN = {1860-6768}, DOI = {10.1002/biot.201600751}, year = {2017}, type = {Journal Article} } - T. Kim, R. Flick, J. Brunzelle, A. Singer, E. Evdokimova, G. Brown, J. C. Joo, G. A. Minasov, W. F. Anderson, R. Mahadevan, A. Savchenko, and A. F. Yakunin, “Novel aldo-keto reductases for the biocatalytic conversion of 3- hydroxybutanal to 1,3-butanediol: structural and biochemical studies,” Applied and environmental microbiology, vol. 83, iss. 7, 2017.
[Bibtex]@article{RN1045_2017, author = {Kim, T. and Flick, R. and Brunzelle, J. and Singer, A. and Evdokimova, E. and Brown, G. and Joo, J. C. and Minasov, G. A. and Anderson, W. F. and Mahadevan, R. and Savchenko, A. and Yakunin, A. F.}, title = {Novel aldo-keto reductases for the biocatalytic conversion of 3- hydroxybutanal to 1,3-butanediol: Structural and biochemical studies}, journal = {Applied and Environmental Microbiology}, volume = {83}, number = {7}, DOI = {10.1128/AEM.03172-16}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85015837417&doi=10.1128%2fAEM.03172-16&partnerID=40&md5=1b05c906802a188ac5bf99707c2a9a5a}, year = {2017}, type = {Journal Article} } - S. Klamt, G. Regensburger, M. P. Gerstl, C. Jungreuthmayer, S. Schuster, R. Mahadevan, J. Zanghellini, and S. Müller, “From elementary flux modes to elementary flux vectors: metabolic pathway analysis with arbitrary linear flux constraints,” Plos computational biology, vol. 13, iss. 4, 2017.
[Bibtex]@article{RN1048_2017, author = {Klamt, S. and Regensburger, G. and Gerstl, M. P. and Jungreuthmayer, C. and Schuster, S. and Mahadevan, R. and Zanghellini, J. and Müller, S.}, title = {From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints}, journal = {PLoS Computational Biology}, volume = {13}, number = {4}, DOI = {10.1371/journal.pcbi.1005409}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85018301681&doi=10.1371%2fjournal.pcbi.1005409&partnerID=40&md5=23f1907b22fc9c83698da66a4fab21a7}, year = {2017}, type = {Journal Article} } - K. Littunen, G. Mai-Gisondi, J. Seppälä, and E. R. Master, “Enzymatically debranched xylans in graft copolymerization,” Biomacromolecules, vol. 18, iss. 5, pp. 1634-1641, 2017.
[Bibtex]@article{RN1052_2017, author = {Littunen, K. and Mai-Gisondi, G. and Seppälä, J. and Master, E. R.}, title = {Enzymatically debranched xylans in graft copolymerization}, journal = {Biomacromolecules}, volume = {18}, number = {5}, pages = {1634-1641}, DOI = {10.1021/acs.biomac.7b00229}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85019101497&doi=10.1021%2facs.biomac.7b00229&partnerID=40&md5=c58e7c39aa2c496de0b3868de02be383}, year = {2017}, type = {Journal Article} } - G. Mai-Gisondi, H. Maaheimo, S. L. Chong, S. Hinz, M. Tenkanen, and E. Master, “Functional comparison of versatile carbohydrate esterases from families ce1, ce6 and ce16 on acetyl-4-o-methylglucuronoxylan and acetyl-galactoglucomannan,” Biochimica et biophysica acta – general subjects, 2017.
[Bibtex]@article{RN1059_2017, author = {Mai-Gisondi, G. and Maaheimo, H. and Chong, S. L. and Hinz, S. and Tenkanen, M. and Master, E.}, title = {Functional comparison of versatile carbohydrate esterases from families CE1, CE6 and CE16 on acetyl-4-O-methylglucuronoxylan and acetyl-galactoglucomannan}, journal = {Biochimica et Biophysica Acta - General Subjects}, DOI = {10.1016/j.bbagen.2017.06.002}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85022188809&doi=10.1016%2fj.bbagen.2017.06.002&partnerID=40&md5=6c728d176dccf0f87fbf57a8e7be2de3}, year = {2017}, type = {Journal Article} } - E. J. T. McGee, A. R. Sangakkara, and L. L. Diosady, “Double fortification of salt with folic acid and iodine,” Journal of food engineering, vol. 198, pp. 72-80, 2017.
[Bibtex]@article{RN678_2017, author = {McGee, E. J. T. and Sangakkara, A. R. and Diosady, L. L.}, title = {Double fortification of salt with folic acid and iodine}, journal = {Journal of Food Engineering}, volume = {198}, pages = {72-80}, ISSN = {02608774 (ISSN)}, DOI = {10.1016/j.jfoodeng.2016.11.019}, year = {2017}, type = {Journal Article} } - T. Meyer, X. Chen, H. N. Tran, D. G. Allen, and E. A. Edwards, “Natural freezing-thawing and its impact on dewaterability and anaerobic digestibility of biosludge,” Environmental engineering science, vol. 34, iss. 5, pp. 357-366, 2017.
[Bibtex]@article{RN1056_2017, author = {Meyer, T. and Chen, X. and Tran, H. N. and Allen, D. G. and Edwards, E. A.}, title = {Natural Freezing-Thawing and Its Impact on Dewaterability and Anaerobic Digestibility of Biosludge}, journal = {Environmental Engineering Science}, volume = {34}, number = {5}, pages = {357-366}, DOI = {10.1089/ees.2016.0372}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85020724726&doi=10.1089%2fees.2016.0372&partnerID=40&md5=c88a895091d7e0b8236d624fda781333}, year = {2017}, type = {Journal Article} } - A. V. Pandit, S. Srinivasan, and R. Mahadevan, “Redesigning metabolism based on orthogonality principles,” Nature communications, vol. 8, 2017.
[Bibtex]@article{RN1054_2017, author = {Pandit, A. V. and Srinivasan, S. and Mahadevan, R.}, title = {Redesigning metabolism based on orthogonality principles}, journal = {Nature Communications}, volume = {8}, DOI = {10.1038/ncomms15188}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85020003398&doi=10.1038%2fncomms15188&partnerID=40&md5=8a164bb131a100f38f53d40f7da396b3}, year = {2017}, type = {Journal Article} } - S. Partow, P. B. Hyland, and R. Mahadevan, “Synthetic rescue couples nadph generation to metabolite overproduction in saccharomyces cerevisiae,” Metab eng, vol. 43, iss. Pt A, pp. 64-70, 2017.
[Bibtex]@article{RN1071_2017, author = {Partow, S. and Hyland, P. B. and Mahadevan, R.}, title = {Synthetic rescue couples NADPH generation to metabolite overproduction in Saccharomyces cerevisiae}, journal = {Metab Eng}, volume = {43}, number = {Pt A}, pages = {64-70}, ISSN = {1096-7176}, DOI = {10.1016/j.ymben.2017.08.004}, year = {2017}, type = {Journal Article} } - L. G. Pereira, H. L. Maclean, and B. A. Saville, “Financial analyses of potential biojet fuel production technologies,” Biofuels, bioproducts and biorefining, 2017.
[Bibtex]@article{RN1049_2017, author = {Pereira, L. G. and Maclean, H. L. and Saville, B. A.}, title = {Financial analyses of potential biojet fuel production technologies}, journal = {Biofuels, Bioproducts and Biorefining}, DOI = {10.1002/bbb.1775}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85018733585&doi=10.1002%2fbbb.1775&partnerID=40&md5=5e045433e416c307a4dd8783b1ef3425}, year = {2017}, type = {Journal Article} } - A. Popovic, T. Hai, A. Tchigvintsev, M. Hajighasemi, B. Nocek, A. N. Khusnutdinova, G. Brown, J. Glinos, R. Flick, T. Skarina, T. N. Chernikova, V. Yim, T. Brüls, D. L. Paslier, M. M. Yakimov, A. Joachimiak, M. Ferrer, O. V. Golyshina, A. Savchenko, P. N. Golyshin, and A. F. Yakunin, “Activity screening of environmental metagenomic libraries reveals novel carboxylesterase families,” Scientific reports, vol. 7, 2017.
[Bibtex]@article{RN1041_2017, author = {Popovic, A. and Hai, T. and Tchigvintsev, A. and Hajighasemi, M. and Nocek, B. and Khusnutdinova, A. N. and Brown, G. and Glinos, J. and Flick, R. and Skarina, T. and Chernikova, T. N. and Yim, V. and Brüls, T. and Paslier, D. L. and Yakimov, M. M. and Joachimiak, A. and Ferrer, M. and Golyshina, O. V. and Savchenko, A. and Golyshin, P. N. and Yakunin, A. F.}, title = {Activity screening of environmental metagenomic libraries reveals novel carboxylesterase families}, journal = {Scientific Reports}, volume = {7}, DOI = {10.1038/srep44103}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85014885135&doi=10.1038%2fsrep44103&partnerID=40&md5=ce3cd0bab4ce66d48b4294a7b610b7b8}, year = {2017}, type = {Journal Article} } - A. Pratap Singh, J. Siddiqui, and L. L. Diosady, “Characterizing the ph-dependent release kinetics of food-grade spray drying encapsulated iron microcapsules for food fortification,” Food and bioprocess technology, 2017.
[Bibtex]@article{RN1088_2017, author = {Pratap Singh, Anubhav and Siddiqui, Juveria and Diosady, Levente L.}, title = {Characterizing the pH-Dependent Release Kinetics of Food-Grade Spray Drying Encapsulated Iron Microcapsules for Food Fortification}, journal = {Food and Bioprocess Technology}, ISSN = {1935-5149}, DOI = {10.1007/s11947-017-2022-0}, url = {https://doi.org/10.1007/s11947-017-2022-0}, year = {2017}, type = {Journal Article} } - L. A. Puentes Jacome and E. A. Edwards, “A switch of chlorinated substrate causes emergence of a previously undetected native dehalobacter population in an established dehalococcoides-dominated chloroethene-dechlorinating enrichment culture,” Fems microbiol ecol, vol. 93, iss. 12, 2017.
[Bibtex]@article{RN1082_2017, author = {Puentes Jacome, L. A. and Edwards, E. A.}, title = {A switch of chlorinated substrate causes emergence of a previously undetected native Dehalobacter population in an established Dehalococcoides-dominated chloroethene-dechlorinating enrichment culture}, journal = {FEMS Microbiol Ecol}, volume = {93}, number = {12}, ISSN = {0168-6496}, DOI = {10.1093/femsec/fix141}, year = {2017}, type = {Journal Article} } - W. Qiao, F. Luo, L. Lomheim, E. E. Mack, S. Ye, J. Wu, and E. A. Edwards, “Natural attenuation and anaerobic benzene detoxification processes at a chlorobenzene-contaminated industrial site inferred from field investigations and microcosm studies,” Environmental science & technology, 2017.
[Bibtex]@article{RN1087_2017, author = {Qiao, Wenjing and Luo, Fei and Lomheim, Line and Mack, Elizabeth Erin and Ye, Shujun and Wu, Jichun and Edwards, Elizabeth A.}, title = {Natural attenuation and anaerobic benzene detoxification processes at a chlorobenzene-contaminated industrial site inferred from field investigations and microcosm studies}, journal = {Environmental Science & Technology}, ISSN = {0013-936X}, DOI = {10.1021/acs.est.7b04145}, url = {http://dx.doi.org/10.1021/acs.est.7b04145}, year = {2017}, type = {Journal Article} } - V. Sarv, O. Trass, and L. L. Diosady, “Preparation and characterization of camelina sativa protein isolates and mucilage,” Jaocs, journal of the american oil chemists’ society, pp. 1-7, 2017.
[Bibtex]@article{RN1065_2017, author = {Sarv, V. and Trass, O. and Diosady, L. L.}, title = {Preparation and Characterization of Camelina sativa Protein Isolates and Mucilage}, journal = {JAOCS, Journal of the American Oil Chemists' Society}, pages = {1-7}, DOI = {10.1007/s11746-017-3031-x}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85028767526&doi=10.1007%2fs11746-017-3031-x&partnerID=40&md5=6fa8498cd50e5b3ddc83647a6ba6c56f}, year = {2017}, type = {Journal Article} } - S. Sinichi, D. G. B. Boocock, and L. L. Diosady, “Mixed alcohol transesterification of mustard oil,” International news on fats, oils and related materials, vol. 28, iss. 10, pp. 16-18, 2017.
[Bibtex]@article{RN1099_2017, author = {Sinichi, S. and Boocock, D. G. B. and Diosady, L. L.}, title = {Mixed alcohol transesterification of mustard oil}, journal = {International News on Fats, Oils and Related Materials}, volume = {28}, number = {10}, pages = {16-18}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85040915861&partnerID=40&md5=7bc12eb6ac658953446aab3b0e4776a8}, year = {2017}, type = {Journal Article} } - S. Sinichi, D. G. B. Boocock, and L. L. Diosady, “Production of isopropyl and methyl esters from yellow mustard oil/ipa miscellas,” Jaocs, journal of the american oil chemists’ society, pp. 1-11, 2017.
[Bibtex]@article{RN1032_2017, author = {Sinichi, S. and Boocock, D. G. B. and Diosady, L. L.}, title = {Production of isopropyl and methyl esters from yellow mustard oil/IPA miscellas}, journal = {JAOCS, Journal of the American Oil Chemists' Society}, pages = {1-11}, ISSN = {0003021X (ISSN)}, DOI = {10.1007/s11746-016-2942-2}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85009284537&doi=10.1007%2fs11746-016-2942-2&partnerID=40&md5=4d023b82c8a754e2ae5f8d573ab1ee2f}, year = {2017}, type = {Journal Article} } - J. Telling, K. Voglesonger, C. N. Sutcliffe, G. Lacrampe-Couloume, E. Edwards, and B. Sherwood Lollar, “Bioenergetic constraints on microbial hydrogen utilization in precambrian deep crustal fracture fluids,” Geomicrobiology journal, pp. 1-12, 2017.
[Bibtex]@article{RN1063_2017, author = {Telling, J. and Voglesonger, K. and Sutcliffe, C. N. and Lacrampe-Couloume, G. and Edwards, E. and Sherwood Lollar, B.}, title = {Bioenergetic Constraints on Microbial Hydrogen Utilization in Precambrian Deep Crustal Fracture Fluids}, journal = {Geomicrobiology Journal}, pages = {1-12}, DOI = {10.1080/01490451.2017.1333176}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85026353286&doi=10.1080%2f01490451.2017.1333176&partnerID=40&md5=8fea324e7c995f30943a48df96cb3a1f}, year = {2017}, type = {Journal Article} } - A. Y. L. Tsai, K. Chan, C. Y. Ho, T. Canam, R. Capron, E. R. Master, and K. Bräutigam, “Transgenic expression of fungal accessory hemicellulases in arabidopsis thaliana triggers transcriptional patterns related to biotic stress and defense response,” Plos one, vol. 12, iss. 3, 2017.
[Bibtex]@article{RN1040_2017, author = {Tsai, A. Y. L. and Chan, K. and Ho, C. Y. and Canam, T. and Capron, R. and Master, E. R. and Bräutigam, K.}, title = {Transgenic expression of fungal accessory hemicellulases in Arabidopsis thaliana triggers transcriptional patterns related to biotic stress and defense response}, journal = {PLoS ONE}, volume = {12}, number = {3}, DOI = {10.1371/journal.pone.0173094}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85014357411&doi=10.1371%2fjournal.pone.0173094&partnerID=40&md5=dd2fd573322a40a7bc3898dcd6e04148}, year = {2017}, type = {Journal Article} } - T. V. Vuong, B. Liu, M. Sandgren, and E. R. Master, “Microplate-based detection of lytic polysaccharide monooxygenase activity by fluorescence-labeling of insoluble oxidized products,” Biomacromolecules, vol. 18, iss. 2, pp. 610-616, 2017.
[Bibtex]@article{RN1037_2017, author = {Vuong, T. V. and Liu, B. and Sandgren, M. and Master, E. R.}, title = {Microplate-based detection of lytic polysaccharide monooxygenase activity by fluorescence-labeling of insoluble oxidized products}, journal = {Biomacromolecules}, volume = {18}, number = {2}, pages = {610-616}, DOI = {10.1021/acs.biomac.6b01790}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85012247679&doi=10.1021%2facs.biomac.6b01790&partnerID=40&md5=d05310138517c6aa2d70b9651db1e122}, year = {2017}, type = {Journal Article} } - M. T. Wong, W. Wang, M. Couturier, F. M. Razeq, V. Lombard, P. Lapebie, E. A. Edwards, N. Terrapon, B. Henrissat, and E. Master, “Comparative metagenomics of cellulose-and poplar hydrolysate-degrading microbial enrichments from gut microflora of the canadian beaver (castor canadensis) and north american moose (alces americanus) after long term enrichment,” Frontiers in microbiology, vol. 8, p. 2504, 2017.
[Bibtex]@article{RN1094_2017, author = {Wong, Mabel T and Wang, Weijun and Couturier, Marie and Razeq, Fakhria M and Lombard, Vincent and Lapebie, Pascal and Edwards, Elizabeth A and Terrapon, Nicolas and Henrissat, Bernard and Master, Emma}, title = {Comparative metagenomics of cellulose-and poplar hydrolysate-degrading microbial enrichments from gut microflora of the Canadian beaver (Castor canadensis) and North American moose (Alces americanus) after long term enrichment}, journal = {Frontiers in Microbiology}, volume = {8}, pages = {2504}, ISSN = {1664-302X}, year = {2017}, type = {Journal Article} } - M. Woolman, A. Tata, D. Dara, J. Meens, E. D’Arcangelo, C. J. Perez, S. Saiyara Prova, E. Bluemke, H. J. Ginsberg, D. Ifa, A. McGuigan, L. Ailles, and A. Zarrine-Afsar, “Rapid determination of the tumour stroma ratio in squamous cell carcinomas with desorption electrospray ionization mass spectrometry (desi-ms): a proof-of-concept demonstration,” Analyst, vol. 142, iss. 17, pp. 3250-3260, 2017.
[Bibtex]@article{RN1064_2017, author = {Woolman, M. and Tata, A. and Dara, D. and Meens, J. and D'Arcangelo, E. and Perez, C. J. and Saiyara Prova, S. and Bluemke, E. and Ginsberg, H. J. and Ifa, D. and McGuigan, A. and Ailles, L. and Zarrine-Afsar, A.}, title = {Rapid determination of the tumour stroma ratio in squamous cell carcinomas with desorption electrospray ionization mass spectrometry (DESI-MS): A proof-of-concept demonstration}, journal = {Analyst}, volume = {142}, number = {17}, pages = {3250-3260}, DOI = {10.1039/c7an00830a}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85027960561&doi=10.1039%2fc7an00830a&partnerID=40&md5=2f2e3317a1712057137e25df42d1bff1}, year = {2017}, type = {Journal Article} } - J. Yan, M. Bi, A. K. Bourdon, A. T. Farmer, P. Wang, O. Molenda, A. T. Quaile, N. Jiang, Y. Yang, Y. Yin, B. Şimşir, S. R. Campagna, E. A. Edwards, and F. E. Löffler, “Purinyl-cobamide is a native prosthetic group of reductive dehalogenases,” Nature chemical biology, 2017.
[Bibtex]@article{RN1085_2017, author = {Yan, Jun and Bi, Meng and Bourdon, Allen K. and Farmer, Abigail T. and Wang, Po-Hsiang and Molenda, Olivia and Quaile, Andrew T. and Jiang, Nannan and Yang, Yi and Yin, Yongchao and Şimşir, Burcu and Campagna, Shawn R. and Edwards, Elizabeth A. and Löffler, Frank E.}, title = {Purinyl-cobamide is a native prosthetic group of reductive dehalogenases}, journal = {Nature Chemical Biology}, DOI = {10.1038/nchembio.2512 https://www.nature.com/articles/nchembio.2512#supplementary-information}, url = {http://dx.doi.org/10.1038/nchembio.2512 https://www.nature.com/articles/nchembio.2512.pdf}, year = {2017}, type = {Journal Article} } - R. Yan, T. V. Vuong, W. Wang, and E. R. Master, “Action of a gh115 α-glucuronidase from amphibacillus xylanus at alkaline condition promotes release of 4-o-methylglucopyranosyluronic acid from glucuronoxylan and arabinoglucuronoxylan,” Enzyme and microbial technology, vol. 104, pp. 22-28, 2017.
[Bibtex]@article{RN1053_2017, author = {Yan, R. and Vuong, T. V. and Wang, W. and Master, E. R.}, title = {Action of a GH115 α-glucuronidase from Amphibacillus xylanus at alkaline condition promotes release of 4-O-methylglucopyranosyluronic acid from glucuronoxylan and arabinoglucuronoxylan}, journal = {Enzyme and Microbial Technology}, volume = {104}, pages = {22-28}, DOI = {10.1016/j.enzmictec.2017.05.004}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85020239787&doi=10.1016%2fj.enzmictec.2017.05.004&partnerID=40&md5=bc5a727efac1dc07b6eeb9c18e369026}, year = {2017}, type = {Journal Article} } - W. Zhai, M. T. Wong, F. Luo, M. Z. Hashmi, X. Liu, E. A. Edwards, X. Tang, and J. Xu, “Arsenic methylation and its relationship to abundance and diversity of arsm genes in composting manure,” Scientific reports, vol. 7, 2017.
[Bibtex]@article{RN1042_2017, author = {Zhai, W. and Wong, M. T. and Luo, F. and Hashmi, M. Z. and Liu, X. and Edwards, E. A. and Tang, X. and Xu, J.}, title = {Arsenic methylation and its relationship to abundance and diversity of arsM genes in composting manure}, journal = {Scientific Reports}, volume = {7}, DOI = {10.1038/srep42198}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85014910700&doi=10.1038%2fsrep42198&partnerID=40&md5=d6028cbe3f904dbb798a4d0137b8f2f4}, year = {2017}, type = {Journal Article} }
2016
- S. Bonilla T and D. G. Allen, “Flocculation with lysozyme: a non-enzymatic application,” Canadian journal of chemical engineering, vol. 94, iss. 2, pp. 231-237, 2016.
[Bibtex]@article{RN518_2016, author = {Bonilla T, S. and Allen, D. G.}, title = {Flocculation with lysozyme: A Non-Enzymatic Application}, journal = {Canadian Journal of Chemical Engineering}, volume = {94}, number = {2}, pages = {231-237}, ISSN = {00084034 (ISSN)}, DOI = {10.1002/cjce.22386}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84955326890&doi=10.1002%2fcjce.22386&partnerID=40&md5=cbbc0d262227b6e52099f8b3fbf20713}, year = {2016}, type = {Journal Article} } - S. Chen, C. E. White, G. C. diCenzo, Y. Zhang, P. J. Stogios, A. Savchenko, and T. M. Finan, “L-hydroxyproline and d-proline catabolism in sinorhizobium meliloti,” Journal of bacteriology, vol. 198, iss. 7, pp. 1171-1181, 2016.
[Bibtex]@article{RN896_2016, author = {Chen, S. and White, C. E. and diCenzo, G. C. and Zhang, Y. and Stogios, P. J. and Savchenko, A. and Finan, T. M.}, title = {L-Hydroxyproline and D-proline catabolism in Sinorhizobium meliloti}, journal = {Journal of Bacteriology}, volume = {198}, number = {7}, pages = {1171-1181}, ISSN = {00219193 (ISSN)}, DOI = {10.1128/JB.00961-15}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84961171343&doi=10.1128%2fJB.00961-15&partnerID=40&md5=e01479cac58d80407cb7f307eeca86bd}, year = {2016}, type = {Journal Article} } - P. L. Chu, C. Vanderghem, H. L. MacLean, and B. A. Saville, “Financial analysis and risk assessment of hydroprocessed renewable jet fuel production from camelina, carinata and used cooking oil,” Applied energy, vol. 198, pp. 401-409, 2016.
[Bibtex]@article{RN632_2016, author = {Chu, P. L. and Vanderghem, C. and MacLean, H. L. and Saville, B. A.}, title = {Financial analysis and risk assessment of hydroprocessed renewable jet fuel production from camelina, carinata and used cooking oil}, journal = {Applied Energy}, volume = {198}, pages = {401-409}, ISSN = {03062619 (ISSN)}, DOI = {10.1016/j.apenergy.2016.12.001}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85008146710&doi=10.1016%2fj.apenergy.2016.12.001&partnerID=40&md5=9723d610b3a44141c120951127dca211}, year = {2016}, type = {Journal Article} } - V. Dueik and L. L. Diosady, “Microencapsulation of iron in a reversed enteric coating using spray drying technology for double fortification of salt with iodine and iron,” Journal of food process engineering, vol. 40, iss. 2, 2016.
[Bibtex]@article{RN680_2016, author = {Dueik, V. and Diosady, L. L.}, title = {Microencapsulation of iron in a reversed enteric coating using spray drying technology for double fortification of salt with iodine and iron}, journal = {Journal of Food Process Engineering}, volume = {40}, number = {2}, ISSN = {01458876 (ISSN)}, DOI = {10.1111/jfpe.12376}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84960333782&doi=10.1111%2fjfpe.12376&partnerID=40&md5=adbd7d7e65a4c6660c6ead74c8df15cc}, year = {2016}, type = {Journal Article} } - C. K. Euler and R. Mahadevan, “Protein-level control of metabolism: design principles and prospects from a representative system,” Ifac-papersonline, vol. 49, iss. 26, pp. 165-170, 2016.
[Bibtex]@article{RN382_2016, author = {Euler, C. K. and Mahadevan, R.}, title = {Protein-level control of metabolism: Design principles and prospects from a representative system}, journal = {IFAC-PapersOnLine}, volume = {49}, number = {26}, pages = {165-170}, ISSN = {24058963 (ISSN)}, DOI = {10.1016/j.ifacol.2016.12.120}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85008395826&doi=10.1016%2fj.ifacol.2016.12.120&partnerID=40&md5=30d84762229cfa11831d57cd43ef28c7}, year = {2016}, type = {Journal Article} } - T. M. Fitamo, O. Dahl, E. Master, and T. Meyer, “Biochemical methane potential of kraft bleaching effluent and codigestion with other in-mill streams,” Tappi journal, vol. 15, iss. 2, pp. 80-88, 2016.
[Bibtex]@article{RN321_2016, author = {Fitamo, T. M. and Dahl, O. and Master, E. and Meyer, T.}, title = {Biochemical methane potential of kraft bleaching effluent and codigestion with other in-mill streams}, journal = {Tappi Journal}, volume = {15}, number = {2}, pages = {80-88}, ISSN = {07341415 (ISSN)}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84960840201&partnerID=40&md5=7180d2814c99564dc4b49380033f0378}, year = {2016}, type = {Journal Article} } - A. Gagarinova, G. Stewart, B. Samanfar, S. Phanse, C. A. White, H. Aoki, V. Deineko, N. Beloglazova, A. F. Yakunin, A. Golshani, E. D. Brown, M. Babu, and A. Emili, “Systematic genetic screens reveal the dynamic global functional organization of the bacterial translation machinery,” Cell reports, vol. 17, iss. 3, pp. 904-916, 2016.
[Bibtex]@article{RN775_2016, author = {Gagarinova, A. and Stewart, G. and Samanfar, B. and Phanse, S. and White, C. A. and Aoki, H. and Deineko, V. and Beloglazova, N. and Yakunin, A. F. and Golshani, A. and Brown, E. D. and Babu, M. and Emili, A.}, title = {Systematic genetic screens reveal the dynamic global functional organization of the bacterial translation machinery}, journal = {Cell Reports}, volume = {17}, number = {3}, pages = {904-916}, ISSN = {22111247 (ISSN)}, DOI = {10.1016/j.celrep.2016.09.040}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84992176751&doi=10.1016%2fj.celrep.2016.09.040&partnerID=40&md5=6a28baa6a82ee7c211b0a62317e98767}, year = {2016}, type = {Journal Article} } - K. Gerbrandt, P. L. Chu, A. Simmonds, K. A. Mullins, H. L. MacLean, W. M. Griffin, and B. A. Saville, “Life cycle assessment of lignocellulosic ethanol: a review of key factors and methods affecting calculated ghg emissions and energy use,” Current opinion in biotechnology, vol. 38, pp. 63-70, 2016.
[Bibtex]@article{RN635_2016, author = {Gerbrandt, K. and Chu, P. L. and Simmonds, A. and Mullins, K. A. and MacLean, H. L. and Griffin, W. M. and Saville, B. A.}, title = {Life cycle assessment of lignocellulosic ethanol: A review of key factors and methods affecting calculated GHG emissions and energy use}, journal = {Current Opinion in Biotechnology}, volume = {38}, pages = {63-70}, ISSN = {09581669 (ISSN)}, DOI = {10.1016/j.copbio.2015.12.021}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84955117470&doi=10.1016%2fj.copbio.2015.12.021&partnerID=40&md5=10e5422ec95d5488edce29c4a9390e53}, year = {2016}, type = {Journal Article} } - M. Hajighasemi, B. P. Nocek, A. Tchigvintsev, G. Brown, R. Flick, X. Xu, H. Cui, T. Hai, A. Joachimiak, P. N. Golyshin, A. Savchenko, E. A. Edwards, and A. F. Yakunin, “Biochemical and structural insights into enzymatic depolymerization of polylactic acid and other polyesters by microbial carboxylesterases,” Biomacromolecules, vol. 17, iss. 6, pp. 2027-2039, 2016.
[Bibtex]@article{RN194_2016, author = {Hajighasemi, M. and Nocek, B. P. and Tchigvintsev, A. and Brown, G. and Flick, R. and Xu, X. and Cui, H. and Hai, T. and Joachimiak, A. and Golyshin, P. N. and Savchenko, A. and Edwards, E. A. and Yakunin, A. F.}, title = {Biochemical and structural insights into enzymatic depolymerization of polylactic acid and other polyesters by microbial carboxylesterases}, journal = {Biomacromolecules}, volume = {17}, number = {6}, pages = {2027-2039}, ISSN = {15257797 (ISSN)}, DOI = {10.1021/acs.biomac.6b00223}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84974851169&doi=10.1021%2facs.biomac.6b00223&partnerID=40&md5=818b16453c413e81f50eaa38c7d9d374}, year = {2016}, type = {Journal Article} } - L. Huang, A. Khusnutdinova, B. Nocek, G. Brown, X. Xu, H. Cui, P. Petit, R. Flick, R. Zallot, K. Balmant, M. J. Ziemak, J. Shanklin, V. De Crécy-Lagard, O. Fiehn, J. F. Gregory, A. Joachimiak, A. Savchenko, A. F. Yakunin, and A. D. Hanson, “A family of metal-dependent phosphatases implicated in metabolite damage-control,” Nature chemical biology, vol. 12, iss. 8, pp. 621-627, 2016.
[Bibtex]@article{RN777_2016, author = {Huang, L. and Khusnutdinova, A. and Nocek, B. and Brown, G. and Xu, X. and Cui, H. and Petit, P. and Flick, R. and Zallot, R. and Balmant, K. and Ziemak, M. J. and Shanklin, J. and De Crécy-Lagard, V. and Fiehn, O. and Gregory, J. F. and Joachimiak, A. and Savchenko, A. and Yakunin, A. F. and Hanson, A. D.}, title = {A family of metal-dependent phosphatases implicated in metabolite damage-control}, journal = {Nature Chemical Biology}, volume = {12}, number = {8}, pages = {621-627}, ISSN = {15524450 (ISSN)}, DOI = {10.1038/nchembio.2108}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84975290954&doi=10.1038%2fnchembio.2108&partnerID=40&md5=55cfdd39c3b6dd9637ace45743810772}, year = {2016}, type = {Journal Article} } - M. A. Islam, A. Tchigvintsev, V. Yim, A. Savchenko, A. F. Yakunin, R. Mahadevan, and E. A. Edwards, “Experimental validation of in silico model-predicted isocitrate dehydrogenase and phosphomannose isomerase from dehalococcoides mccartyi,” Microbial biotechnology, vol. 9, iss. 1, pp. 47-60, 2016.
[Bibtex]@article{RN199_2016, author = {Islam, M. A. and Tchigvintsev, A. and Yim, V. and Savchenko, A. and Yakunin, A. F. and Mahadevan, R. and Edwards, E. A.}, title = {Experimental validation of in silico model-predicted isocitrate dehydrogenase and phosphomannose isomerase from Dehalococcoides mccartyi}, journal = {Microbial Biotechnology}, volume = {9}, number = {1}, pages = {47-60}, ISSN = {17517907 (ISSN)}, DOI = {10.1111/1751-7915.12315}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84953351425&doi=10.1111%2f1751-7915.12315&partnerID=40&md5=3284b273515f3325c2f7a1919bbcb41f}, year = {2016}, type = {Journal Article} } - M. Khaksar Toroghi, W. R. Cluett, and K. Mahadevan, “Multi-scale metabolic modelling approach for predicting blood alcohol concentration,” Ieee life sciences letters, vol. 2, iss. 4, pp. 59-62, 2016.
[Bibtex]@article{RN1060_2016, author = {Khaksar Toroghi, Masood and Cluett, W. R. and Mahadevan, K.}, title = {Multi-scale metabolic modelling approach for predicting blood alcohol concentration}, journal = {IEEE Life Sciences Letters}, volume = {2}, number = {4}, pages = {59-62}, year = {2016}, type = {Journal Article} } - C. M. D. Kocur, L. Lomheim, O. Molenda, K. P. Weber, L. M. Austrins, B. E. Sleep, H. K. Boparai, E. A. Edwards, and D. M. O’Carroll, “Long-term field study of microbial community and dechlorinating activity following carboxymethyl cellulose-stabilized nanoscale zero-valent iron injection,” Environmental science and technology, vol. 50, iss. 14, pp. 7658-7670, 2016.
[Bibtex]@article{RN193_2016, author = {Kocur, C. M. D. and Lomheim, L. and Molenda, O. and Weber, K. P. and Austrins, L. M. and Sleep, B. E. and Boparai, H. K. and Edwards, E. A. and O'Carroll, D. M.}, title = {Long-term field study of microbial community and dechlorinating activity following carboxymethyl cellulose-stabilized nanoscale zero-valent iron injection}, journal = {Environmental Science and Technology}, volume = {50}, number = {14}, pages = {7658-7670}, ISSN = {0013936X (ISSN)}, DOI = {10.1021/acs.est.6b01745}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84978886843&doi=10.1021%2facs.est.6b01745&partnerID=40&md5=f577fcc1e8dfd797cf942492e0f46a21}, year = {2016}, type = {Journal Article} } - A. Kumar, N. Beloglazova, C. Bundalovic-Torma, S. Phanse, V. Deineko, A. Gagarinova, G. Musso, J. Vlasblom, S. Lemak, M. Hooshyar, Z. Minic, O. Wagih, R. Mosca, P. Aloy, A. Golshani, J. Parkinson, A. Emili, A. F. Yakunin, and M. Babu, “Conditional epistatic interaction maps reveal global functional rewiring of genome integrity pathways in escherichia coli,” Cell reports, vol. 14, iss. 3, pp. 648-661, 2016.
[Bibtex]@article{RN779_2016, author = {Kumar, A. and Beloglazova, N. and Bundalovic-Torma, C. and Phanse, S. and Deineko, V. and Gagarinova, A. and Musso, G. and Vlasblom, J. and Lemak, S. and Hooshyar, M. and Minic, Z. and Wagih, O. and Mosca, R. and Aloy, P. and Golshani, A. and Parkinson, J. and Emili, A. and Yakunin, A. F. and Babu, M.}, title = {Conditional epistatic interaction maps reveal global functional rewiring of genome integrity pathways in Escherichia coli}, journal = {Cell Reports}, volume = {14}, number = {3}, pages = {648-661}, ISSN = {22111247 (ISSN)}, DOI = {10.1016/j.celrep.2015.12.060}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84953449542&doi=10.1016%2fj.celrep.2015.12.060&partnerID=40&md5=7a9a3efd000187d266144706e0f134ae}, year = {2016}, type = {Journal Article} } - J. M. Luk, B. A. Saville, and H. L. MacLean, “Impact of non-petroleum vehicle fuel economy on ghg mitigation potential,” Environmental research letters, vol. 11, iss. 4, 2016.
[Bibtex]@article{RN636_2016, author = {Luk, J. M. and Saville, B. A. and MacLean, H. L.}, title = {Impact of non-petroleum vehicle fuel economy on GHG mitigation potential}, journal = {Environmental Research Letters}, volume = {11}, number = {4}, ISSN = {17489318 (ISSN)}, DOI = {10.1088/1748-9326/11/4/044001}, year = {2016}, type = {Journal Article} } - J. M. Luk, B. A. Saville, and H. L. MacLean, “Vehicle attribute trade-offs to meet the 2025 cafe fuel economy target,” Transportation research part d: transport and environment, vol. 49, pp. 154-171, 2016.
[Bibtex]@article{RN630_2016, author = {Luk, J. M. and Saville, B. A. and MacLean, H. L.}, title = {Vehicle attribute trade-offs to meet the 2025 CAFE fuel economy target}, journal = {Transportation Research Part D: Transport and Environment}, volume = {49}, pages = {154-171}, ISSN = {13619209 (ISSN)}, DOI = {10.1016/j.trd.2016.09.005 Shiau, C., Michalek, J., Hendrickson, C., A structural analysis of vehicle design responses to corporate average fuel economy policy (2009) Transp. Res. Part A, 43 (2009), pp. 814-828; Simmons, R., Shaver, G., Tyner, W., Garimella, S., A benefit-cost assessment of new vehicle technologies and fuel economy in the U.S. market (2015) Appl. Energy, 157 (2015), pp. 940-952; Sivak, M., Schoettle, B., Update: percentage of young persons with a driver's license continues to drop (2014) Traffic Injury Prevent., 13 (4), p. 341; Small, K.A., Van Dender, K., Fuel efficiency and motor vehicle travel: the declining rebound effect (2007) Energy J., 28 (1), pp. 25-52; http://www.thecarconnection.com/cars/chevrolet_equinox, The Car Connection, n.d. Chevrolet Equinox. Source: (retrieved: 15 June 2015)Turkus, B., Fiat loses $14k on every 500e it builds, Marchionne doesn't want you to buy one (2014), http://www.autoblog.com/2014/05/22/fiat-loses-14k-every-500e-builds-marchionne/, Source: (retrieved: 15 June 2015)US Army, Army receives first six NEVs (2009), http://www.army.mil/article/15751/army-receives-first-of-six-nevs/, Source: (retrieved: 15 June 2015)Voelcker, J., Electric Cars: Some Are Real, Most Are Only ‘Compliance Cars’–We Name Names (2012), http://www.greencarreports.com/news/1068832_electric-cars-some-are-real-most-are-only-compliance-cars–we-name-names, Source: (retrieved: 15 June 2015)Wadud, Z., MacKenzie, D., Leiby, P., Help or hindrance? The travel, energy and carbon impact of highly automated vehicles (2016) Transp. Res. Part A, 86 (April), pp. 1-18; Whitefoot, K., Skerlos, S., Design incentives to increase vehicle size created from the U.S. footprint-based fuel economy standards (2011) Energy Policy, 41 (February), pp. 402-411; Whitefoot, K., Fowlie, M., Skerlos, S., Product design response to industrial policy: evaluating fuel economy standards using an engineering model of endogenous product design (2012) American Economic Association 2012 Annual Meeting, Chicago, 5–8 Jan 2012, pp. 1-55}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84988602866&doi=10.1016%2fj.trd.2016.09.005&partnerID=40&md5=161dd1e6f5bf8d97af53bb82e7bb6430}, year = {2016}, type = {Journal Article} } - F. Luo, C. E. Devine, and E. A. Edwards, “Cultivating microbial dark matter in benzene-degrading methanogenic consortia,” Environmental microbiology, vol. 18, iss. 9, pp. 2923-2936, 2016.
[Bibtex]@article{RN192_2016, author = {Luo, F. and Devine, C. E. and Edwards, E. A.}, title = {Cultivating microbial dark matter in benzene-degrading methanogenic consortia}, journal = {Environmental Microbiology}, volume = {18}, number = {9}, pages = {2923-2936}, ISSN = {14622912 (ISSN)}, DOI = {10.1111/1462-2920.13121}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84987624172&doi=10.1111%2f1462-2920.13121&partnerID=40&md5=9bb03a0c4299b12a601c9a69298ebc13}, year = {2016}, type = {Journal Article} } - J. MacDonald, R. E. Goacher, M. Abou-Zaid, and E. R. Master, “Comparative analysis of lignin peroxidase and manganese peroxidase activity on coniferous and deciduous wood using tof-sims,” Applied microbiology and biotechnology, vol. 100, iss. 18, pp. 8013-8020, 2016.
[Bibtex]@article{RN319_2016, author = {MacDonald, J. and Goacher, R. E. and Abou-Zaid, M. and Master, E. R.}, title = {Comparative analysis of lignin peroxidase and manganese peroxidase activity on coniferous and deciduous wood using ToF-SIMS}, journal = {Applied Microbiology and Biotechnology}, volume = {100}, number = {18}, pages = {8013-8020}, ISSN = {01757598 (ISSN)}, DOI = {10.1007/s00253-016-7560-2}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84965013562&doi=10.1007%2fs00253-016-7560-2&partnerID=40&md5=6fa6b18f9cb7a531e54a9c1c9530f3a2}, year = {2016}, type = {Journal Article} } - K. Mayer-Blackwell, M. Fincker, O. Molenda, B. Callahan, H. Sewell, S. Holmes, E. A. Edwards, and A. M. Spormann, “1,2-dichloroethane exposure alters the population structure, metabolism, and kinetics of a trichloroethene-dechlorinating dehalococcoides mccartyi consortium,” Environmental science and technology, vol. 50, iss. 22, pp. 12187-12196, 2016.
[Bibtex]@article{RN190_2016, author = {Mayer-Blackwell, K. and Fincker, M. and Molenda, O. and Callahan, B. and Sewell, H. and Holmes, S. and Edwards, E. A. and Spormann, A. M.}, title = {1,2-Dichloroethane exposure alters the population structure, metabolism, and kinetics of a trichloroethene-dechlorinating Dehalococcoides mccartyi consortium}, journal = {Environmental Science and Technology}, volume = {50}, number = {22}, pages = {12187-12196}, ISSN = {0013936X (ISSN)}, DOI = {10.1021/acs.est.6b02957}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84995677715&doi=10.1021%2facs.est.6b02957&partnerID=40&md5=e2a969ede3d81407c978c5d632eacb0d}, year = {2016}, type = {Journal Article} } - N. McGregor, M. Morar, T. H. Fenger, P. Stogios, N. Lenfant, V. Yin, X. Xu, E. Evdokimova, H. Cui, B. Henrissat, A. Savchenko, and H. Brumer, “Structure-function analysis of a mixed-linkage β-glucanase/xyloglucanase from the key ruminal bacteroidetes prevotella bryantii b14,” Journal of biological chemistry, vol. 291, iss. 3, pp. 1175-1197, 2016.
[Bibtex]@article{RN894_2016, author = {McGregor, N. and Morar, M. and Fenger, T. H. and Stogios, P. and Lenfant, N. and Yin, V. and Xu, X. and Evdokimova, E. and Cui, H. and Henrissat, B. and Savchenko, A. and Brumer, H.}, title = {Structure-function analysis of a mixed-linkage β-glucanase/xyloglucanase from the key ruminal bacteroidetes Prevotella bryantii B14}, journal = {Journal of Biological Chemistry}, volume = {291}, number = {3}, pages = {1175-1197}, ISSN = {00219258 (ISSN)}, DOI = {10.1074/jbc.M115.691659}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84954500354&doi=10.1074%2fjbc.M115.691659&partnerID=40&md5=8931356a5e50e61190a9cded61c97537}, year = {2016}, type = {Journal Article} } - J. McKechnie, B. Saville, and H. L. MacLean, “Steam-treated wood pellets: environmental and financial implications relative to fossil fuels and conventional pellets for electricity generation,” Applied energy, vol. 180, pp. 637-649, 2016.
[Bibtex]@article{RN631_2016, author = {McKechnie, J. and Saville, B. and MacLean, H. L.}, title = {Steam-treated wood pellets: Environmental and financial implications relative to fossil fuels and conventional pellets for electricity generation}, journal = {Applied Energy}, volume = {180}, pages = {637-649}, ISSN = {03062619 (ISSN)}, DOI = {10.1016/j.apenergy.2016.08.024}, year = {2016}, type = {Journal Article} } - T. Meyer, M. I. Yang, H. N. Tran, D. G. Allen, and E. A. Edwards, “Impact of resin and fatty acids on full-scale anaerobic treatment of pulp and paper mill effluents,” Environmental engineering science, vol. 33, iss. 6, pp. 394-403, 2016.
[Bibtex]@article{RN195_2016, author = {Meyer, T. and Yang, M. I. and Tran, H. N. and Allen, D. G. and Edwards, E. A.}, title = {Impact of resin and fatty acids on full-scale anaerobic treatment of pulp and paper mill effluents}, journal = {Environmental Engineering Science}, volume = {33}, number = {6}, pages = {394-403}, ISSN = {10928758 (ISSN)}, DOI = {10.1089/ees.2015.0395}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84977137261&doi=10.1089%2fees.2015.0395&partnerID=40&md5=34330a9f19b27be2bfea7e7165b71a5e}, year = {2016}, type = {Journal Article} } - M. Mimura, R. Zallot, T. D. Niehaus, G. Hasnain, S. K. Gidda, T. N. D. Nguyen, E. M. Anderson, R. T. Mullen, G. Brown, A. F. Yakunin, V. de Crécy-Lagard, I. Gregory J. F., D. R. McCarty, and A. D. Hanson, “Arabidopsis th2 encodes the orphan enzyme thiamin monophosphate phosphatase,” Plant cell, vol. 28, iss. 10, pp. 2683-2696, 2016.
[Bibtex]@article{RN776_2016, author = {Mimura, M. and Zallot, R. and Niehaus, T. D. and Hasnain, G. and Gidda, S. K. and Nguyen, T. N. D. and Anderson, E. M. and Mullen, R. T. and Brown, G. and Yakunin, A. F. and de Crécy-Lagard, V. and Gregory, J. F., III and McCarty, D. R. and Hanson, A. D.}, title = {Arabidopsis TH2 encodes the orphan enzyme thiamin monophosphate phosphatase}, journal = {Plant Cell}, volume = {28}, number = {10}, pages = {2683-2696}, ISSN = {10404651 (ISSN)}, DOI = {10.1105/tpc.16.00600}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84995366756&doi=10.1105%2ftpc.16.00600&partnerID=40&md5=bfdcc100c11480c5a76b501601ccfb17}, year = {2016}, type = {Journal Article} } - O. Molenda, A. T. Quaile, and E. A. Edwards, “Dehalogenimonas sp. strain wbc-2 genome and identification of its trans-dichloroethene reductive dehalogenase, tdra,” Applied and environmental microbiology, vol. 82, iss. 1, pp. 40-50, 2016.
[Bibtex]@article{RN197_2016, author = {Molenda, O. and Quaile, A. T. and Edwards, E. A.}, title = {Dehalogenimonas sp. Strain WBC-2 genome and identification of its trans-dichloroethene reductive dehalogenase, TdrA}, journal = {Applied and Environmental Microbiology}, volume = {82}, number = {1}, pages = {40-50}, ISSN = {00992240 (ISSN)}, DOI = {10.1128/AEM.02017-15}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84953911490&doi=10.1128%2fAEM.02017-15&partnerID=40&md5=2d9103927be6a8b3404689925aa2abb0}, year = {2016}, type = {Journal Article} } - O. Molenda, S. Tang, and E. A. Edwards, “Complete genome sequence of dehalococcoides mccartyi strain wbc-2, capable of anaerobic reductive dechlorination of vinyl chloride,” Genome announcements, vol. 4, iss. 6, 2016.
[Bibtex]@article{RN1034_2016, author = {Molenda, O. and Tang, S. and Edwards, E. A.}, title = {Complete genome sequence of Dehalococcoides mccartyi strain WBC-2, capable of anaerobic reductive dechlorination of vinyl chloride}, journal = {Genome Announcements}, volume = {4}, number = {6}, DOI = {10.1128/genomeA.01375-16}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85010792396&doi=10.1128%2fgenomeA.01375-16&partnerID=40&md5=7439d1769c37cb59d6b8ce355a93a98f}, year = {2016}, type = {Journal Article} } - F. Mollerup and E. Master, “Influence of a family 29 carbohydrate binding module on the recombinant production of galactose oxidase in pichia pastoris,” Data in brief, vol. 6, pp. 176-183, 2016.
[Bibtex]@article{RN320_2016, author = {Mollerup, F. and Master, E.}, title = {Influence of a family 29 carbohydrate binding module on the recombinant production of galactose oxidase in Pichia pastoris}, journal = {Data in Brief}, volume = {6}, pages = {176-183}, ISSN = {23523409 (ISSN)}, DOI = {10.1016/j.dib.2015.11.032}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84961128260&doi=10.1016%2fj.dib.2015.11.032&partnerID=40&md5=b7700c7080a26bf3165f849f8dfd31fe}, year = {2016}, type = {Journal Article} } - F. Mollerup, K. Parikka, T. V. Vuong, M. Tenkanen, and E. Master, “Influence of a family 29 carbohydrate binding module on the activity of galactose oxidase from fusarium graminearum,” Biochimica et biophysica acta – general subjects, vol. 1860, iss. 2, pp. 354-362, 2016.
[Bibtex]@article{RN322_2016, author = {Mollerup, F. and Parikka, K. and Vuong, T. V. and Tenkanen, M. and Master, E.}, title = {Influence of a family 29 carbohydrate binding module on the activity of galactose oxidase from Fusarium graminearum}, journal = {Biochimica et Biophysica Acta - General Subjects}, volume = {1860}, number = {2}, pages = {354-362}, ISSN = {03044165 (ISSN)}, DOI = {10.1016/j.bbagen.2015.10.023}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84948469936&doi=10.1016%2fj.bbagen.2015.10.023&partnerID=40&md5=2d48957a3775a856ee5a969fd2c0e885}, year = {2016}, type = {Journal Article} } - A. B. Namazi, D. G. Allen, and C. Q. Jia, “Benefits of microwave heating method in production of activated carbon,” Canadian journal of chemical engineering, vol. 94, iss. 7, pp. 1262-1268, 2016.
[Bibtex]@article{RN516_2016, author = {Namazi, A. B. and Allen, D. G. and Jia, C. Q.}, title = {Benefits of microwave heating method in production of activated carbon}, journal = {Canadian Journal of Chemical Engineering}, volume = {94}, number = {7}, pages = {1262-1268}, ISSN = {00084034 (ISSN)}, DOI = {10.1002/cjce.22521}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84974731323&doi=10.1002%2fcjce.22521&partnerID=40&md5=82e0da10861ab542f7bfec7447253f24}, year = {2016}, type = {Journal Article} } - H. Otani, P. J. Stogios, X. Xu, B. Nocek, S. N. Li, A. Savchenko, and L. D. Eltis, “The activity of cour, a marr family transcriptional regulator, is modulated through a novel molecular mechanism,” Nucleic acids research, vol. 44, iss. 2, pp. 595-607, 2016.
[Bibtex]@article{RN893_2016, author = {Otani, H. and Stogios, P. J. and Xu, X. and Nocek, B. and Li, S. N. and Savchenko, A. and Eltis, L. D.}, title = {The activity of CouR, a MarR family transcriptional regulator, is modulated through a novel molecular mechanism}, journal = {Nucleic Acids Research}, volume = {44}, number = {2}, pages = {595-607}, ISSN = {03051048 (ISSN)}, DOI = {10.1093/nar/gkv955}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84966356240&doi=10.1093%2fnar%2fgkv955&partnerID=40&md5=618ee99b05e41a31821dd11e7ec1df6d}, year = {2016}, type = {Journal Article} } - G. T. Peniuk, P. J. Schnurr, and D. G. Allen, “Identification and quantification of suspended algae and bacteria populations using flow cytometry: applications for algae biofuel and biochemical growth systems,” Journal of applied phycology, vol. 28, iss. 1, pp. 95-104, 2016.
[Bibtex]@article{RN519_2016, author = {Peniuk, G. T. and Schnurr, P. J. and Allen, D. G.}, title = {Identification and quantification of suspended algae and bacteria populations using flow cytometry: applications for algae biofuel and biochemical growth systems}, journal = {Journal of Applied Phycology}, volume = {28}, number = {1}, pages = {95-104}, ISSN = {09218971 (ISSN)}, DOI = {10.1007/s10811-015-0569-6}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84957576283&doi=10.1007%2fs10811-015-0569-6&partnerID=40&md5=0936df4f9d47388bc6a6ff4e01483659}, year = {2016}, type = {Journal Article} } - D. Rodenhizer, D. Cojocari, B. G. Wouters, and A. P. McGuigan, “Development of tracer: tissue roll for analysis of cellular environment and response,” Biofabrication, vol. 8, iss. 4, 2016.
[Bibtex]@article{RN477_2016, author = {Rodenhizer, D. and Cojocari, D. and Wouters, B. G. and McGuigan, A. P.}, title = {Development of TRACER: Tissue roll for analysis of cellular environment and response}, journal = {Biofabrication}, volume = {8}, number = {4}, ISSN = {17585082 (ISSN)}, DOI = {10.1088/1758-5090/8/4/045008}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85006073846&doi=10.1088%2f1758-5090%2f8%2f4%2f045008&partnerID=40&md5=6856bfe95bfd0996dc8dc38ef5d85459}, year = {2016}, type = {Journal Article} } - D. Rodenhizer, E. Gaude, D. Cojocari, R. Mahadevan, C. Frezza, B. G. Wouters, and A. P. McGuigan, “A three-dimensional engineered tumour for spatial snapshot analysis of cell metabolism and phenotype in hypoxic gradients,” Nature materials, vol. 15, iss. 2, pp. 227-234, 2016.
[Bibtex]@article{RN481_2016, author = {Rodenhizer, D. and Gaude, E. and Cojocari, D. and Mahadevan, R. and Frezza, C. and Wouters, B. G. and McGuigan, A. P.}, title = {A three-dimensional engineered tumour for spatial snapshot analysis of cell metabolism and phenotype in hypoxic gradients}, journal = {Nature Materials}, volume = {15}, number = {2}, pages = {227-234}, ISSN = {14761122 (ISSN)}, DOI = {10.1038/nmat4482}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84955478956&doi=10.1038%2fnmat4482&partnerID=40&md5=02a9995d43a7bbec51514b1463c95930}, year = {2016}, type = {Journal Article} } - M. Rolando, P. Escoll, T. Nora, J. Botti, V. Boitez, C. Bedia, C. Daniels, G. Abraham, P. J. Stogios, T. Skarina, C. Christophe, D. Dervins-Ravault, C. Cazalet, H. Hilbi, T. W. T. Rupasinghe, D. Tull, M. J. McConville, S. Y. Ong, E. L. Hartland, P. Codogno, T. Levade, T. Naderer, A. Savchenko, and C. Buchrieser, “Legionella pneumophila s1p-lyase targets host sphingolipid metabolism and restrains autophagy,” Proceedings of the national academy of sciences of the united states of america, vol. 113, iss. 7, pp. 1901-1906, 2016.
[Bibtex]@article{RN892_2016, author = {Rolando, M. and Escoll, P. and Nora, T. and Botti, J. and Boitez, V. and Bedia, C. and Daniels, C. and Abraham, G. and Stogios, P. J. and Skarina, T. and Christophe, C. and Dervins-Ravault, D. and Cazalet, C. and Hilbi, H. and Rupasinghe, T. W. T. and Tull, D. and McConville, M. J. and Ong, S. Y. and Hartland, E. L. and Codogno, P. and Levade, T. and Naderer, T. and Savchenko, A. and Buchrieser, C.}, title = {Legionella pneumophila S1P-lyase targets host sphingolipid metabolism and restrains autophagy}, journal = {Proceedings of the National Academy of Sciences of the United States of America}, volume = {113}, number = {7}, pages = {1901-1906}, ISSN = {00278424 (ISSN)}, DOI = {10.1073/pnas.1522067113}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84959018593&doi=10.1073%2fpnas.1522067113&partnerID=40&md5=82cc4e09f42355d30b2cd3200bb37813}, year = {2016}, type = {Journal Article} } - B. A. Saville, W. M. Griffin, and H. L. MacLean, “Ethanol production technologies in the us: status and future developments,” in Global bioethanol: evolution, risks, and uncertainties, Elsevier inc., 2016, pp. 163-180.
[Bibtex]@incollection{RN633, author = {Saville, B. A. and Griffin, W. M. and MacLean, H. L.}, title = {Ethanol production technologies in the US: Status and future developments}, booktitle = {Global Bioethanol: Evolution, Risks, and Uncertainties}, publisher = {Elsevier Inc.}, pages = {163-180}, ISBN = {9780128031568 (ISBN); 9780128031414 (ISBN)}, DOI = {10.1016/B978-0-12-803141-4.00007-1}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84987792441&doi=10.1016%2fB978-0-12-803141-4.00007-1&partnerID=40&md5=b0c473dcd4c011642075159e5551fcf5}, year = {2016}, type = {Book Section} } - P. J. Schnurr, G. S. Espie, and G. D. Allen, “The effect of photon flux density on algal biofilm growth and internal fatty acid concentrations,” Algal research, vol. 16, pp. 349-356, 2016.
[Bibtex]@article{RN626_2016, author = {Schnurr, P. J. and Espie, G. S. and Allen, G. D.}, title = {The effect of photon flux density on algal biofilm growth and internal fatty acid concentrations}, journal = {Algal Research}, volume = {16}, pages = {349-356}, ISSN = {22119264 (ISSN)}, DOI = {10.1016/j.algal.2016.04.001}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84962786674&doi=10.1016%2fj.algal.2016.04.001&partnerID=40&md5=21368f4d0bbf41235b1feacae1150314}, year = {2016}, type = {Journal Article} } - P. J. Schnurr, O. Molenda, E. Edwards, G. S. Espie, and D. G. Allen, “Improved biomass productivity in algal biofilms through synergistic interactions between photon flux density and carbon dioxide concentration,” Bioresource technology, vol. 219, pp. 72-79, 2016.
[Bibtex]@article{RN191_2016, author = {Schnurr, P. J. and Molenda, O. and Edwards, E. and Espie, G. S. and Allen, D. G.}, title = {Improved biomass productivity in algal biofilms through synergistic interactions between photon flux density and carbon dioxide concentration}, journal = {Bioresource Technology}, volume = {219}, pages = {72-79}, ISSN = {09608524 (ISSN)}, DOI = {10.1016/j.biortech.2016.06.129}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84979702234&doi=10.1016%2fj.biortech.2016.06.129&partnerID=40&md5=bd242af89e41ddfa84b11d1b1b2c36d7}, year = {2016}, type = {Journal Article} } - A. H. Shen, D. Howell, E. Edwards, P. Warde, A. Matthew, and J. M. Jones, “The experience of patients with early-stage testicular cancer during the transition from active treatment to follow-up surveillance,” Urologic oncology: seminars and original investigations, vol. 34, iss. 4, 2016.
[Bibtex]@article{RN628_2016, author = {Shen, A. H. and Howell, D. and Edwards, E. and Warde, P. and Matthew, A. and Jones, J. M.}, title = {The experience of patients with early-stage testicular cancer during the transition from active treatment to follow-up surveillance}, journal = {Urologic Oncology: Seminars and Original Investigations}, volume = {34}, number = {4}, ISSN = {10781439 (ISSN)}, DOI = {10.1016/j.urolonc.2015.09.016}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84961213719&doi=10.1016%2fj.urolonc.2015.09.016&partnerID=40&md5=be3e10b63799780749db754bc9ccb6fe}, year = {2016}, type = {Journal Article} } - P. J. Stogios, G. Cox, P. Spanogiannopoulos, M. C. Pillon, N. Waglechner, T. Skarina, K. Koteva, A. Guarné, A. Savchenko, and G. D. Wright, “Rifampin phosphotransferase is an unusual antibiotic resistance kinase,” Nature communications, vol. 7, pp. 1-12, 2016.
[Bibtex]@article{RN891_2016, author = {Stogios, P. J. and Cox, G. and Spanogiannopoulos, P. and Pillon, M. C. and Waglechner, N. and Skarina, T. and Koteva, K. and Guarné, A. and Savchenko, A. and Wright, G. D.}, title = {Rifampin phosphotransferase is an unusual antibiotic resistance kinase}, journal = {Nature Communications}, volume = {7}, pages = {1-12}, ISSN = {20411723 (ISSN)}, DOI = {10.1038/ncomms11343}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84971669517&doi=10.1038%2fncomms11343&partnerID=40&md5=0bf78eb7b13829da1a27f15b43262ae9}, year = {2016}, type = {Journal Article} } - S. Tabtabaei, B. Hijar, B. K. Chen, and L. L. Diosady, “Functional properties of protein isolates produced by aqueous extraction of de-hulled yellow mustard,” Journal of the american oil chemists’ society, vol. 94, iss. 1, pp. 149-160, 2016.
[Bibtex]@article{RN679_2016, author = {Tabtabaei, S. and Hijar, B. and Chen, B. K. and Diosady, L. L.}, title = {Functional properties of protein isolates produced by aqueous extraction of de-hulled yellow mustard}, journal = {Journal of the American Oil Chemists' Society}, volume = {94}, number = {1}, pages = {149-160}, ISSN = {0003021X (ISSN)}, DOI = {10.1007/s11746-016-2922-6}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85000982088&doi=10.1007%2fs11746-016-2922-6&partnerID=40&md5=adfc1997339034e0d1c241dac87c0388}, year = {2016}, type = {Journal Article} } - S. Tang, P. H. Wang, S. A. Higgins, F. E. Löffler, and E. A. Edwards, “Sister dehalobacter genomes reveal specialization in organohalide respiration and recent strain differentiation likely driven by chlorinated substrates,” Frontiers in microbiology, vol. 7, 2016.
[Bibtex]@article{RN196_2016, author = {Tang, S. and Wang, P. H. and Higgins, S. A. and Löffler, F. E. and Edwards, E. A.}, title = {Sister Dehalobacter genomes reveal specialization in organohalide respiration and recent strain differentiation likely driven by chlorinated substrates}, journal = {Frontiers in Microbiology}, volume = {7}, ISSN = {1664302X (ISSN)}, DOI = {10.3389/fmicb.2016.00100}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84962145245&doi=10.3389%2ffmicb.2016.00100&partnerID=40&md5=6dc1b162071c91036ee10d63046cdd14}, year = {2016}, type = {Journal Article} } - M. K. Toroghi, W. R. Cluett, and R. Mahadevan, “Multiscale metabolic modeling approach for predicting blood alcohol concentration,” Ieee life sciences letters, vol. 2, iss. 4, pp. 59-62, 2016.
[Bibtex]@article{RN1055_2016, author = {Toroghi, M. K. and Cluett, W. R. and Mahadevan, R.}, title = {Multiscale metabolic modeling approach for predicting blood alcohol concentration}, journal = {IEEE Life Sciences Letters}, volume = {2}, number = {4}, pages = {59-62}, DOI = {10.1109/LLS.2016.2644647}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85020528682&doi=10.1109%2fLLS.2016.2644647&partnerID=40&md5=75fe7794f9215c0f51ce9b0288b6e8ba}, year = {2016}, type = {Journal Article} } - M. K. Toroghi, W. R. Cluett, and R. Mahadevan, “A multi-scale model of the whole human body based on dynamic parsimonious flux balance analysis,” Ifac-papersonline, vol. 49, iss. 7, pp. 937-942, 2016.
[Bibtex]@article{RN383_2016, author = {Toroghi, M. K. and Cluett, W. R. and Mahadevan, R.}, title = {A multi-scale model of the whole human body based on dynamic parsimonious flux balance analysis}, journal = {IFAC-PapersOnLine}, volume = {49}, number = {7}, pages = {937-942}, ISSN = {24058963 (ISSN)}, DOI = {10.1016/j.ifacol.2016.07.319}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84991032295&doi=10.1016%2fj.ifacol.2016.07.319&partnerID=40&md5=c4bd0319e2d5cbb6a048dec95121875f}, year = {2016}, type = {Journal Article} } - M. L. Urbanus, A. T. Quaile, P. J. Stogios, M. Morar, C. Rao, R. Di Leo, E. Evdokimova, M. Lam, C. Oatway, M. E. Cuff, J. Osipiuk, K. Michalska, B. P. Nocek, M. Taipale, A. Savchenko, and A. W. Ensminger, “Diverse mechanisms of metaeffector activity in an intracellular bacterial pathogen, legionella pneumophila,” Molecular systems biology, vol. 12, iss. 12, 2016.
[Bibtex]@article{RN887_2016, author = {Urbanus, M. L. and Quaile, A. T. and Stogios, P. J. and Morar, M. and Rao, C. and Di Leo, R. and Evdokimova, E. and Lam, M. and Oatway, C. and Cuff, M. E. and Osipiuk, J. and Michalska, K. and Nocek, B. P. and Taipale, M. and Savchenko, A. and Ensminger, A. W.}, title = {Diverse mechanisms of metaeffector activity in an intracellular bacterial pathogen, Legionella pneumophila}, journal = {Molecular Systems Biology}, volume = {12}, number = {12}, ISSN = {17444292 (ISSN)}, DOI = {10.15252/msb.20167381}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85007453813&doi=10.15252%2fmsb.20167381&partnerID=40&md5=256149de1b283ef9e99382d44d43d1c2}, year = {2016}, type = {Journal Article} } - T. V. Vuong, M. Foumani, B. MacCormick, R. Kwan, and E. R. Master, “Direct comparison of gluco-oligosaccharide oxidase variants and glucose oxidase: substrate range and h2o2 stability,” Scientific reports, vol. 6, 2016.
[Bibtex]@article{RN317_2016, author = {Vuong, T. V. and Foumani, M. and MacCormick, B. and Kwan, R. and Master, E. R.}, title = {Direct comparison of gluco-oligosaccharide oxidase variants and glucose oxidase: Substrate range and H2O2 stability}, journal = {Scientific Reports}, volume = {6}, ISSN = {20452322 (ISSN)}, DOI = {10.1038/srep37356}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84996486454&doi=10.1038%2fsrep37356&partnerID=40&md5=a9763bb162deada8af5cf375412f64bd}, year = {2016}, type = {Journal Article} } - P. H. Wang, S. Tang, K. Nemr, R. Flick, J. Yan, R. Mahadevan, A. F Yakunin, F. E. Löffler, and E. A. Edwards, “Refined experimental annotation reveals conserved corrinoid autotrophy in chloroform-respiring dehalobacter isolates,” Isme journal, vol. 11, iss. 3, pp. 626-640, 2016.
[Bibtex]@article{RN189_2016, author = {Wang, P. H. and Tang, S. and Nemr, K. and Flick, R. and Yan, J. and Mahadevan, R. and F Yakunin, A. and Löffler, F. E. and Edwards, E. A.}, title = {Refined experimental annotation reveals conserved corrinoid autotrophy in chloroform-respiring Dehalobacter isolates}, journal = {ISME Journal}, volume = {11}, number = {3}, pages = {626-640}, ISSN = {17517362 (ISSN)}, DOI = {10.1038/ismej.2016.158}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85000542418&doi=10.1038%2fismej.2016.158&partnerID=40&md5=c734f35aee9ec504495cbfc8b7aa7417}, year = {2016}, type = {Journal Article} } - W. Wang, R. Yan, B. P. Nocek, T. V. Vuong, R. D. Leo, X. Xu, H. Cui, P. Gatenholm, G. Toriz, M. Tenkanen, A. Savchenko, and E. R. Master, “Biochemical and structural characterization of a five-domain gh115 α-glucuronidase from the marine bacterium saccharophagus degradans 2-40t,” Journal of biological chemistry, vol. 291, iss. 27, pp. 14120-14133, 2016.
[Bibtex]@article{RN318_2016, author = {Wang, W. and Yan, R. and Nocek, B. P. and Vuong, T. V. and Leo, R. D. and Xu, X. and Cui, H. and Gatenholm, P. and Toriz, G. and Tenkanen, M. and Savchenko, A. and Master, E. R.}, title = {Biochemical and structural characterization of a five-domain GH115 α-Glucuronidase from the marine bacterium Saccharophagus degradans 2-40T}, journal = {Journal of Biological Chemistry}, volume = {291}, number = {27}, pages = {14120-14133}, ISSN = {00219258 (ISSN)}, DOI = {10.1074/jbc.M115.702944}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84976872257&doi=10.1074%2fjbc.M115.702944&partnerID=40&md5=68198c38d4525df0b56f4feda325de37}, year = {2016}, type = {Journal Article} } - K. Wei, A. Grostern, W. W. M. Chan, R. E. Richardson, and E. A. Edwards, “Electron acceptor interactions between organohalide-respiring bacteria: cross-feeding, competition, and inhibition,” in Organohalide-respiring bacteria, Springer berlin heidelberg, 2016, pp. 283-308.
[Bibtex]@incollection{RN198, author = {Wei, K. and Grostern, A. and Chan, W. W. M. and Richardson, R. E. and Edwards, E. A.}, title = {Electron acceptor interactions between organohalide-respiring bacteria: Cross-feeding, competition, and inhibition}, booktitle = {Organohalide-Respiring Bacteria}, publisher = {Springer Berlin Heidelberg}, pages = {283-308}, ISBN = {9783662498750 (ISBN); 9783662498736 (ISBN)}, DOI = {10.1007/978-3-662-49875-0_13}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85006826674&doi=10.1007%2f978-3-662-49875-0_13&partnerID=40&md5=fdbceeb479714dfe124d75763ce45141}, year = {2016}, type = {Book Section} } - M. T. Wong, W. Wang, M. Lacourt, M. Couturier, E. A. Edwards, and E. R. Master, “Substrate-driven convergence of the microbial community in lignocellulose-amended enrichments of gut microflora from the canadian beaver (castor canadensis) and north american moose (alces americanus),” Frontiers in microbiology, vol. 7, iss. JUN, 2016.
[Bibtex]@article{RN200_2016, author = {Wong, M. T. and Wang, W. and Lacourt, M. and Couturier, M. and Edwards, E. A. and Master, E. R.}, title = {Substrate-driven convergence of the microbial community in lignocellulose-amended enrichments of gut microflora from the Canadian beaver (Castor canadensis) and North American moose (Alces americanus)}, journal = {Frontiers in Microbiology}, volume = {7}, number = {JUN}, ISSN = {1664302X (ISSN)}, DOI = {10.3389/fmicb.2016.00961}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84979998413&doi=10.3389%2ffmicb.2016.00961&partnerID=40&md5=11da4d2e0d28aa7b9b40d4099b759dc4}, year = {2016}, type = {Journal Article} } - Y. Xiao, L. A. Reis, N. Feric, E. J. Knee, J. Gu, S. Cao, C. Laschinger, C. Londono, J. Antolovich, A. P. McGuigan, and M. Radisic, “Diabetic wound regeneration using peptide-modified hydrogels to target re-epithelialization,” Proceedings of the national academy of sciences of the united states of america, vol. 113, iss. 40, p. E5792-E5801, 2016.
[Bibtex]@article{RN478_2016, author = {Xiao, Y. and Reis, L. A. and Feric, N. and Knee, E. J. and Gu, J. and Cao, S. and Laschinger, C. and Londono, C. and Antolovich, J. and McGuigan, A. P. and Radisic, M.}, title = {Diabetic wound regeneration using peptide-modified hydrogels to target re-epithelialization}, journal = {Proceedings of the National Academy of Sciences of the United States of America}, volume = {113}, number = {40}, pages = {E5792-E5801}, ISSN = {00278424 (ISSN)}, DOI = {10.1073/pnas.1612277113}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84989829732&doi=10.1073%2fpnas.1612277113&partnerID=40&md5=29f4b1953416fd1e908f1cd26a4448ad}, year = {2016}, type = {Journal Article} } - B. Xu, D. Rodenhizer, S. Lakhani, X. Zhang, J. P. Soleas, L. Ailles, and A. P. McGuigan, “Patterning cellular compartments within tracer cultures using sacrificial gelatin printing,” Biofabrication, vol. 8, iss. 3, 2016.
[Bibtex]@article{RN479_2016, author = {Xu, B. and Rodenhizer, D. and Lakhani, S. and Zhang, X. and Soleas, J. P. and Ailles, L. and McGuigan, A. P.}, title = {Patterning cellular compartments within TRACER cultures using sacrificial gelatin printing}, journal = {Biofabrication}, volume = {8}, number = {3}, ISSN = {17585082 (ISSN)}, DOI = {10.1088/1758-5090/8/3/035018}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84992058697&doi=10.1088%2f1758-5090%2f8%2f3%2f035018&partnerID=40&md5=e24f8e510514b153c7cdde1a1bc71f3e}, year = {2016}, type = {Journal Article} }
2015
- M. Alcaide, P. J. Stogios, A. Lafraya, A. Tchigvintsev, R. Flick, R. Bargiela, T. N. Chernikova, O. N. Reva, T. Hai, C. C. Leggewie, N. Katzke, V. La Cono, R. Matesanz, M. Jebbar, K. E. Jaeger, M. M. Yakimov, A. F. Yakunin, P. N. Golyshin, O. V. Golyshina, A. Savchenko, and M. Ferrer, “Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats,” Environmental microbiology, vol. 17, iss. 2, pp. 332-345, 2015.
[Bibtex]@article{RN792_2015, author = {Alcaide, M. and Stogios, P. J. and Lafraya, A. and Tchigvintsev, A. and Flick, R. and Bargiela, R. and Chernikova, T. N. and Reva, O. N. and Hai, T. and Leggewie, C. C. and Katzke, N. and La Cono, V. and Matesanz, R. and Jebbar, M. and Jaeger, K. E. and Yakimov, M. M. and Yakunin, A. F. and Golyshin, P. N. and Golyshina, O. V. and Savchenko, A. and Ferrer, M.}, title = {Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats}, journal = {Environmental Microbiology}, volume = {17}, number = {2}, pages = {332-345}, ISSN = {14622912 (ISSN)}, DOI = {10.1111/1462-2920.12660}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84923648530&doi=10.1111%2f1462-2920.12660&partnerID=40&md5=557feff3aba3a4e4ba6f6006db5f02ad}, year = {2015}, type = {Journal Article} } - M. Alcaide, A. Tchigvintsev, M. Martínez-Martínez, A. Popovic, O. N. Reva, Á. Lafraya, R. Bargiela, T. Y. Nechitaylo, R. Matesanz, M. A. Cambon-Bonavita, M. Jebbar, M. M. Yakimov, A. Savchenko, O. V. Golyshina, A. F. Yakunin, P. N. Golyshin, and M. Ferrer, “Identification and characterization of carboxyl esterases of gill chamber-associated microbiota in the deep-sea shrimp rimicaris exoculata by using functional metagenomics,” Applied and environmental microbiology, vol. 81, iss. 6, pp. 2125-2136, 2015.
[Bibtex]@article{RN790_2015, author = {Alcaide, M. and Tchigvintsev, A. and Martínez-Martínez, M. and Popovic, A. and Reva, O. N. and Lafraya, Á and Bargiela, R. and Nechitaylo, T. Y. and Matesanz, R. and Cambon-Bonavita, M. A. and Jebbar, M. and Yakimov, M. M. and Savchenko, A. and Golyshina, O. V. and Yakunin, A. F. and Golyshin, P. N. and Ferrer, M.}, title = {Identification and characterization of carboxyl esterases of gill chamber-associated microbiota in the deep-sea shrimp Rimicaris exoculata by using functional metagenomics}, journal = {Applied and Environmental Microbiology}, volume = {81}, number = {6}, pages = {2125-2136}, ISSN = {00992240 (ISSN)}, DOI = {10.1128/AEM.03387-14}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84924692190&doi=10.1128%2fAEM.03387-14&partnerID=40&md5=37c5396c9df936684e4ff34e44f8e18a}, year = {2015}, type = {Journal Article} } - N. Beloglazova, K. Kuznedelov, R. Flick, K. A. Datsenko, G. Brown, A. Popovic, S. Lemak, E. Semenova, K. Severinov, and A. F. Yakunin, “Crispr rna binding and dna target recognition by purified cascade complexes from escherichia coli,” Nucleic acids research, vol. 43, iss. 1, pp. 530-543, 2015.
[Bibtex]@article{RN782_2015, author = {Beloglazova, N. and Kuznedelov, K. and Flick, R. and Datsenko, K. A. and Brown, G. and Popovic, A. and Lemak, S. and Semenova, E. and Severinov, K. and Yakunin, A. F.}, title = {CRISPR RNA binding and DNA target recognition by purified Cascade complexes from Escherichia coli}, journal = {Nucleic Acids Research}, volume = {43}, number = {1}, pages = {530-543}, ISSN = {03051048 (ISSN)}, DOI = {10.1093/nar/gku1285}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84942079467&doi=10.1093%2fnar%2fgku1285&partnerID=40&md5=b91fe34d8d65e3fab3e14d1adee3ade6}, year = {2015}, type = {Journal Article} } - S. Bonilla, H. Tran, and D. G. Allen, “Enhancing pulp and paper mill biosludge dewaterability using enzymes,” Water research, vol. 68, pp. 692-700, 2015.
[Bibtex]@article{RN524_2015, author = {Bonilla, S. and Tran, H. and Allen, D. G.}, title = {Enhancing pulp and paper mill biosludge dewaterability using enzymes}, journal = {Water Research}, volume = {68}, pages = {692-700}, ISSN = {00431354 (ISSN)}, DOI = {10.1016/j.watres.2014.10.057}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84911420343&doi=10.1016%2fj.watres.2014.10.057&partnerID=40&md5=adf749639eb28e8b44d928b6d4862d39}, year = {2015}, type = {Journal Article} } - M. Couturier, D. Navarro, D. Chevret, B. Henrissat, F. Piumi, F. J. Ruiz-Dueñas, A. T. Martinez, I. V. Grigoriev, R. Riley, A. Lipzen, J. G. Berrin, E. R. Master, and M. N. Rosso, “Enhanced degradation of softwood versus hardwood by the white-rot fungus pycnoporus coccineus,” Biotechnology for biofuels, vol. 8, iss. 1, 2015.
[Bibtex]@article{RN324_2015, author = {Couturier, M. and Navarro, D. and Chevret, D. and Henrissat, B. and Piumi, F. and Ruiz-Dueñas, F. J. and Martinez, A. T. and Grigoriev, I. V. and Riley, R. and Lipzen, A. and Berrin, J. G. and Master, E. R. and Rosso, M. N.}, title = {Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus}, journal = {Biotechnology for Biofuels}, volume = {8}, number = {1}, ISSN = {17546834 (ISSN)}, DOI = {10.1186/s13068-015-0407-8}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84950310403&doi=10.1186%2fs13068-015-0407-8&partnerID=40&md5=18bce8045e5c75471cb6dd4456b82148}, year = {2015}, type = {Journal Article} } - G. Cox, P. J. Stogios, A. Savchenko, and G. D. Wright, “Structural and molecular basis for resistance to aminoglycoside antibiotics by the adenylyltransferase ant(2″)-ia,” Mbio, vol. 6, iss. 1, 2015.
[Bibtex]@article{RN905_2015, author = {Cox, G. and Stogios, P. J. and Savchenko, A. and Wright, G. D.}, title = {Structural and molecular basis for resistance to aminoglycoside antibiotics by the adenylyltransferase ANT(2″)-Ia}, journal = {mBio}, volume = {6}, number = {1}, ISSN = {21612129 (ISSN)}, DOI = {10.1128/mBio.02180-14}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84924108668&doi=10.1128%2fmBio.02180-14&partnerID=40&md5=9c815c2e75fa1914888963eb01ec8723}, year = {2015}, type = {Journal Article} } - A. M. Crowe, P. J. Stogios, I. Casabon, E. Evdokimova, A. Savchenko, and L. D. Eltis, “Structural and functional characterization of a ketosteroid transcriptional regulator of mycobacterium tuberculosis,” Journal of biological chemistry, vol. 290, iss. 2, pp. 872-882, 2015.
[Bibtex]@article{RN904_2015, author = {Crowe, A. M. and Stogios, P. J. and Casabon, I. and Evdokimova, E. and Savchenko, A. and Eltis, L. D.}, title = {Structural and functional characterization of a ketosteroid transcriptional regulator of Mycobacterium tuberculosis}, journal = {Journal of Biological Chemistry}, volume = {290}, number = {2}, pages = {872-882}, ISSN = {00219258 (ISSN)}, DOI = {10.1074/jbc.M114.607481}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84920887665&doi=10.1074%2fjbc.M114.607481&partnerID=40&md5=28eae36ff2f7d0334454f8b025acdf82}, year = {2015}, type = {Journal Article} } - E. D’Arcangelo and A. P. McGuigan, “Micropatterning strategies to engineer controlled cell and tissue architecture in vitro,” Biotechniques, vol. 58, iss. 1, pp. 13-23, 2015.
[Bibtex]@article{RN485_2015, author = {D'Arcangelo, E. and McGuigan, A. P.}, title = {Micropatterning strategies to engineer controlled cell and tissue architecture in vitro}, journal = {BioTechniques}, volume = {58}, number = {1}, pages = {13-23}, ISSN = {07366205 (ISSN)}, DOI = {10.2144/000114245}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84921780965&doi=10.2144%2f000114245&partnerID=40&md5=17edacccd1c6d2d24a48bb92b94cf386}, year = {2015}, type = {Journal Article} } - A. Dumitrache, H. J. Eberl, D. G. Allen, and G. M. Wolfaardt, “Mathematical modeling to validate on-line co2 measurements as a metric for cellulolytic biofilm activity in continuous-flow bioreactors,” Biochemical engineering journal, vol. 101, pp. 55-67, 2015.
[Bibtex]@article{RN595_2015, author = {Dumitrache, A. and Eberl, H. J. and Allen, D. G. and Wolfaardt, G. M.}, title = {Mathematical modeling to validate on-line CO2 measurements as a metric for cellulolytic biofilm activity in continuous-flow bioreactors}, journal = {Biochemical Engineering Journal}, volume = {101}, pages = {55-67}, ISSN = {1369703X (ISSN)}, DOI = {10.1016/j.bej.2015.04.022}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84929148938&doi=10.1016%2fj.bej.2015.04.022&partnerID=40&md5=16a89ce6d5feaf364530944283c95834}, year = {2015}, type = {Journal Article} } - A. Ebrahim, E. Almaas, E. Bauer, A. Bordbar, A. P. Burgard, R. L. Chang, A. Dräger, I. Famili, A. M. Feist, R. M. T. Fleming, S. S. Fong, V. Hatzimanikatis, A. Holder, M. Hucka, D. Hyduke, N. Jamshidi, S. Y. Lee, N. Le Novère, J. A. Lerman, N. E. Lewis, D. Ma, R. Mahadevan, C. Maranas, H. Nagarajan, A. Navid, J. Nielsen, L. K. Nielsen, J. Nogales, A. Noronha, C. Pal, B. O. Palsson, J. A. Papin, K. R. Patil, N. D. Price, J. L. Reed, M. Saunders, R. S. Senger, N. Sonnenschein, Y. Sun, and I. Thiele, “Do genome-scale models need exact solvers or clearer standards?,” Molecular systems biology, vol. 11, iss. 10, p. 831, 2015.
[Bibtex]@article{RN385_2015, author = {Ebrahim, A. and Almaas, E. and Bauer, E. and Bordbar, A. and Burgard, A. P. and Chang, R. L. and Dräger, A. and Famili, I. and Feist, A. M. and Fleming, R. M. T. and Fong, S. S. and Hatzimanikatis, V. and Holder, A. and Hucka, M. and Hyduke, D. and Jamshidi, N. and Lee, S. Y. and Le Novère, N. and Lerman, J. A. and Lewis, N. E. and Ma, D. and Mahadevan, R. and Maranas, C. and Nagarajan, H. and Navid, A. and Nielsen, J. and Nielsen, L. K. and Nogales, J. and Noronha, A. and Pal, C. and Palsson, B. O. and Papin, J. A. and Patil, K. R. and Price, N. D. and Reed, J. L. and Saunders, M. and Senger, R. S. and Sonnenschein, N. and Sun, Y. and Thiele, I.}, title = {Do genome-scale models need exact solvers or clearer standards?}, journal = {Molecular Systems Biology}, volume = {11}, number = {10}, pages = {831}, ISSN = {17444292 (ISSN)}, DOI = {10.15252/msb.20156157}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84945933008&doi=10.15252%2fmsb.20156157&partnerID=40&md5=23e7773bebee383ff0f7f562b31394a8}, year = {2015}, type = {Journal Article} } - M. Foumani, T. V. Vuong, B. MacCormick, and E. R. Master, “Enhanced polysaccharide binding and activity on linear β-glucans through addition of carbohydrate-binding modules to either terminus of a glucooligosaccharide oxidase,” Plos one, vol. 10, iss. 5, 2015.
[Bibtex]@article{RN329_2015, author = {Foumani, M. and Vuong, T. V. and MacCormick, B. and Master, E. R.}, title = {Enhanced polysaccharide binding and activity on linear β-glucans through addition of carbohydrate-binding modules to either terminus of a glucooligosaccharide oxidase}, journal = {PLoS ONE}, volume = {10}, number = {5}, ISSN = {19326203 (ISSN)}, DOI = {10.1371/journal.pone.0125398}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84928799208&doi=10.1371%2fjournal.pone.0125398&partnerID=40&md5=bd4836b8ba0e308d032991973d0c49d8}, year = {2015}, type = {Journal Article} } - M. L. Gandla, M. Derba-Maceluch, X. Liu, L. Gerber, E. R. Master, E. J. Mellerowicz, and L. J. Jönsson, “Expression of a fungal glucuronoyl esterase in populus: effects on wood properties and saccharification efficiency,” Phytochemistry, vol. 112, iss. 1, pp. 210-220, 2015.
[Bibtex]@article{RN335_2015, author = {Gandla, M. L. and Derba-Maceluch, M. and Liu, X. and Gerber, L. and Master, E. R. and Mellerowicz, E. J. and Jönsson, L. J.}, title = {Expression of a fungal glucuronoyl esterase in Populus: Effects on wood properties and saccharification efficiency}, journal = {Phytochemistry}, volume = {112}, number = {1}, pages = {210-220}, ISSN = {00319422 (ISSN)}, DOI = {10.1016/j.phytochem.2014.06.002}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84935897099&doi=10.1016%2fj.phytochem.2014.06.002&partnerID=40&md5=d8a9e2dd94957d0881547d1ab1611ebb}, year = {2015}, type = {Journal Article} } - A. Gaona, Y. Lawryshyn, and B. Saville, “The effect of fed-batch operation and rotational speed on high-solids enzymatic hydrolysis of hardwood substrates,” Industrial biotechnology, vol. 11, iss. 5, pp. 277-283, 2015.
[Bibtex]@article{RN639_2015, author = {Gaona, A. and Lawryshyn, Y. and Saville, B.}, title = {The effect of fed-batch operation and rotational speed on high-solids enzymatic hydrolysis of hardwood substrates}, journal = {Industrial Biotechnology}, volume = {11}, number = {5}, pages = {277-283}, ISSN = {15509087 (ISSN)}, DOI = {10.1089/ind.2014.0031}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84945394171&doi=10.1089%2find.2014.0031&partnerID=40&md5=70c17278a6eaf1564c8ad53d0d10d9b8}, year = {2015}, type = {Journal Article} } - P. Gawand, F. Said Abukar, N. Venayak, S. Partow, A. E. Motter, and R. Mahadevan, “Sub-optimal phenotypes of double-knockout mutants of escherichia coli depend on the order of gene deletions,” Integrative biology : quantitative biosciences from nano to macro, vol. 7, iss. 8, pp. 930-939, 2015.
[Bibtex]@article{RN395_2015, author = {Gawand, P. and Said Abukar, F. and Venayak, N. and Partow, S. and Motter, A. E. and Mahadevan, R.}, title = {Sub-optimal phenotypes of double-knockout mutants of Escherichia coli depend on the order of gene deletions}, journal = {Integrative biology : quantitative biosciences from nano to macro}, volume = {7}, number = {8}, pages = {930-939}, ISSN = {17579694 (ISSN)}, DOI = {10.1039/c5ib00096c}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84938679149&doi=10.1039%2fc5ib00096c&partnerID=40&md5=0d13297e805ab304c652952bf1e9206b}, year = {2015}, type = {Journal Article} } - S. N. Genin, J. S. Aitchison, and D. G. Allen, “Novel waveguide reactor design for enhancing algal biofilm growth,” Algal research, vol. 12, pp. 529-538, 2015.
[Bibtex]@article{RN520_2015, author = {Genin, S. N. and Aitchison, J. S. and Allen, D. G.}, title = {Novel waveguide reactor design for enhancing algal biofilm growth}, journal = {Algal Research}, volume = {12}, pages = {529-538}, ISSN = {22119264 (ISSN)}, DOI = {10.1016/j.algal.2015.10.013}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84947921761&doi=10.1016%2fj.algal.2015.10.013&partnerID=40&md5=6f595f9a7098d3cbb24f9acc055aff6e}, year = {2015}, type = {Journal Article} } - N. D. Gold, C. M. Gowen, F. X. Lussier, S. C. Cautha, R. Mahadevan, and V. J. J. Martin, “Metabolic engineering of a tyrosine-overproducing yeast platform using targeted metabolomics,” Microbial cell factories, vol. 14, iss. 1, 2015.
[Bibtex]@article{RN389_2015, author = {Gold, N. D. and Gowen, C. M. and Lussier, F. X. and Cautha, S. C. and Mahadevan, R. and Martin, V. J. J.}, title = {Metabolic engineering of a tyrosine-overproducing yeast platform using targeted metabolomics}, journal = {Microbial Cell Factories}, volume = {14}, number = {1}, ISSN = {14752859 (ISSN)}, DOI = {10.1186/s12934-015-0252-2}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84931041879&doi=10.1186%2fs12934-015-0252-2&partnerID=40&md5=f250e9994abb1c36e5320c499fde1b9f}, year = {2015}, type = {Journal Article} } - A. S. Halavaty, R. L. Rich, C. Chen, J. C. Joo, G. Minasov, I. Dubrovska, J. R. Winsor, D. G. Myszka, M. Duban, L. Shuvalova, A. F. Yakunin, and W. F. Anderson, “Structural and functional analysis of betaine aldehyde dehydrogenase from staphylococcus aureus,” Acta crystallographica section d: biological crystallography, vol. 71, pp. 1159-1175, 2015.
[Bibtex]@article{RN788_2015, author = {Halavaty, A. S. and Rich, R. L. and Chen, C. and Joo, J. C. and Minasov, G. and Dubrovska, I. and Winsor, J. R. and Myszka, D. G. and Duban, M. and Shuvalova, L. and Yakunin, A. F. and Anderson, W. F.}, title = {Structural and functional analysis of betaine aldehyde dehydrogenase from Staphylococcus aureus}, journal = {Acta Crystallographica Section D: Biological Crystallography}, volume = {71}, pages = {1159-1175}, ISSN = {09074449 (ISSN)}, DOI = {10.1107/S1399004715004228}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84929233023&doi=10.1107%2fS1399004715004228&partnerID=40&md5=8b2a568d26fa65e5794e19f9ca797ab1}, year = {2015}, type = {Journal Article} } - L. A. Hug and E. A. Edwards, “Corrigendum to diversity of reductive dehalogenase genes from environmental samples and enrichment cultures identified with degenerate primer pcr screens,” Frontiers in microbiology, vol. 6, iss. 30, 2015.
[Bibtex]@article{RN205_2015, author = {Hug, L. A. and Edwards, E. A.}, title = {Corrigendum to Diversity of reductive dehalogenase genes from environmental samples and enrichment cultures identified with degenerate primer PCR screens}, journal = {Frontiers in Microbiology}, volume = {6}, number = {30}, ISSN = {1664302X (ISSN)}, DOI = {10.3389/fmicb.2015.00030}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84927512244&doi=10.3389%2ffmicb.2015.00030&partnerID=40&md5=400aad7c88179281ed58a538a5608501}, year = {2015}, type = {Journal Article} } - E. Huynh, B. Y. C. Leung, B. L. Helfield, M. Shakiba, J. A. Gandier, C. S. Jin, E. R. Master, B. C. Wilson, D. E. Goertz, and G. Zheng, “In situ conversion of porphyrin microbubbles to nanoparticles for multimodality imaging,” Nature nanotechnology, vol. 10, iss. 4, pp. 325-332, 2015.
[Bibtex]@article{RN332_2015, author = {Huynh, E. and Leung, B. Y. C. and Helfield, B. L. and Shakiba, M. and Gandier, J. A. and Jin, C. S. and Master, E. R. and Wilson, B. C. and Goertz, D. E. and Zheng, G.}, title = {In situ conversion of porphyrin microbubbles to nanoparticles for multimodality imaging}, journal = {Nature Nanotechnology}, volume = {10}, number = {4}, pages = {325-332}, ISSN = {17483387 (ISSN)}, DOI = {10.1038/nnano.2015.25}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84927176348&doi=10.1038%2fnnano.2015.25&partnerID=40&md5=ed30d58154b4f2a2081e2e4359157f06}, year = {2015}, type = {Journal Article} } - M. A. Islam, K. Zengler, E. A. Edwards, R. Mahadevan, and G. Stephanopoulos, “Investigating moorella thermoacetica metabolism with a genome-scale constraint-based metabolic model,” Integrative biology : quantitative biosciences from nano to macro, vol. 7, iss. 8, pp. 869-882, 2015.
[Bibtex]@article{RN202_2015, author = {Islam, M. A. and Zengler, K. and Edwards, E. A. and Mahadevan, R. and Stephanopoulos, G.}, title = {Investigating Moorella thermoacetica metabolism with a genome-scale constraint-based metabolic model}, journal = {Integrative biology : quantitative biosciences from nano to macro}, volume = {7}, number = {8}, pages = {869-882}, ISSN = {17579708 (ISSN)}, DOI = {10.1039/c5ib00095e}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84979823459&doi=10.1039%2fc5ib00095e&partnerID=40&md5=54574cbb1d82236c8c5245465ef13a29}, year = {2015}, type = {Journal Article} } - S. Javaherian, E. D’Arcangelo, B. Slater, T. Zulueta-Coarasa, R. Fernandez-Gonzalez, and A. P. McGuigan, “An in vitro model of tissue boundary formation for dissecting the contribution of different boundary forming mechanisms,” Integrative biology : quantitative biosciences from nano to macro, vol. 7, iss. 3, pp. 298-312, 2015.
[Bibtex]@article{RN484_2015, author = {Javaherian, S. and D'Arcangelo, E. and Slater, B. and Zulueta-Coarasa, T. and Fernandez-Gonzalez, R. and McGuigan, A. P.}, title = {An in vitro model of tissue boundary formation for dissecting the contribution of different boundary forming mechanisms}, journal = {Integrative biology : quantitative biosciences from nano to macro}, volume = {7}, number = {3}, pages = {298-312}, ISSN = {17579708 (ISSN)}, DOI = {10.1039/c4ib00272e}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84952716174&doi=10.1039%2fc4ib00272e&partnerID=40&md5=cb9b7b168f96ae57fa8a25fe3dfc156d}, year = {2015}, type = {Journal Article} } - A. P. Kaur, B. P. Nocek, X. Xu, M. J. Lowden, J. F. Leyva, P. J. Stogios, H. Cui, R. Di Leo, J. Powlowski, A. Tsang, and A. Savchenko, “Functional and structural diversity in gh62 α-l-arabinofuranosidases from the thermophilic fungus scytalidium thermophilum,” Microbial biotechnology, vol. 8, iss. 3, pp. 419-433, 2015.
[Bibtex]@article{RN907_2015, author = {Kaur, A. P. and Nocek, B. P. and Xu, X. and Lowden, M. J. and Leyva, J. F. and Stogios, P. J. and Cui, H. and Di Leo, R. and Powlowski, J. and Tsang, A. and Savchenko, A.}, title = {Functional and structural diversity in GH62 α-L-arabinofuranosidases from the thermophilic fungus Scytalidium thermophilum}, journal = {Microbial Biotechnology}, volume = {8}, number = {3}, pages = {419-433}, ISSN = {17517907 (ISSN)}, DOI = {10.1111/1751-7915.12168}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84928052016&doi=10.1111%2f1751-7915.12168&partnerID=40&md5=2836d610f1ea67862cd119297782dbaa}, year = {2015}, type = {Journal Article} } - S. Klamt and R. Mahadevan, “On the feasibility of growth-coupled product synthesis in microbial strains,” Metabolic engineering, vol. 30, pp. 166-178, 2015.
[Bibtex]@article{RN388_2015, author = {Klamt, S. and Mahadevan, R.}, title = {On the feasibility of growth-coupled product synthesis in microbial strains}, journal = {Metabolic Engineering}, volume = {30}, pages = {166-178}, ISSN = {10967176 (ISSN)}, DOI = {10.1016/j.ymben.2015.05.006}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84935478514&doi=10.1016%2fj.ymben.2015.05.006&partnerID=40&md5=7f7f47842fa6c78b28a5e9db27f06e81}, year = {2015}, type = {Journal Article} } - C. M. D. Kocur, L. Lomheim, H. K. Boparai, A. I. A. Chowdhury, K. P. Weber, L. M. Austrins, E. A. Edwards, B. E. Sleep, and D. M. O’Carroll, “Contributions of abiotic and biotic dechlorination following carboxymethyl cellulose stabilized nanoscale zero valent iron injection,” Environmental science and technology, vol. 49, iss. 14, pp. 8648-8656, 2015.
[Bibtex]@article{RN203_2015, author = {Kocur, C. M. D. and Lomheim, L. and Boparai, H. K. and Chowdhury, A. I. A. and Weber, K. P. and Austrins, L. M. and Edwards, E. A. and Sleep, B. E. and O'Carroll, D. M.}, title = {Contributions of abiotic and biotic dechlorination following carboxymethyl cellulose stabilized nanoscale zero valent iron injection}, journal = {Environmental Science and Technology}, volume = {49}, number = {14}, pages = {8648-8656}, ISSN = {0013936X (ISSN)}, DOI = {10.1021/acs.est.5b00719}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84937459540&doi=10.1021%2facs.est.5b00719&partnerID=40&md5=3265a180f15acc2af7d2e8eb08f65be9}, year = {2015}, type = {Journal Article} } - E. Kuznetsova, B. Nocek, G. Brown, K. S. Makarova, R. Flick, Y. I. Wolf, A. Khusnutdinova, E. Evdokimova, K. Jin, K. Tan, A. D. Hanson, G. Hasnain, R. Zallot, V. De Crécy-Lagard, M. Babu, A. Savchenko, A. Joachimiak, A. M. Edwards, E. V. Koonin, and A. F. Yakunin, “Functional diversity of haloacid dehalogenase superfamily phosphatases from saccharomyces cerevisiae: biochemical, structural, and evolutionary insights,” Journal of biological chemistry, vol. 290, iss. 30, pp. 18678-18698, 2015.
[Bibtex]@article{RN783_2015, author = {Kuznetsova, E. and Nocek, B. and Brown, G. and Makarova, K. S. and Flick, R. and Wolf, Y. I. and Khusnutdinova, A. and Evdokimova, E. and Jin, K. and Tan, K. and Hanson, A. D. and Hasnain, G. and Zallot, R. and De Crécy-Lagard, V. and Babu, M. and Savchenko, A. and Joachimiak, A. and Edwards, A. M. and Koonin, E. V. and Yakunin, A. F.}, title = {Functional diversity of haloacid dehalogenase superfamily phosphatases from Saccharomyces cerevisiae: Biochemical, structural, and evolutionary insights}, journal = {Journal of Biological Chemistry}, volume = {290}, number = {30}, pages = {18678-18698}, ISSN = {00219258 (ISSN)}, DOI = {10.1074/jbc.M115.657916}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84937939003&doi=10.1074%2fjbc.M115.657916&partnerID=40&md5=d040fccecb27c5b753406c9fd37b61a0}, year = {2015}, type = {Journal Article} } - X. Liang, O. Molenda, S. Tang, and E. A. Edwards, “Identity and substrate specificity of reductive dehalogenases expressed in dehalococcoides-containing enrichment cultures maintained on different chlorinated ethenes,” Applied and environmental microbiology, vol. 81, iss. 14, pp. 4626-4633, 2015.
[Bibtex]@article{RN206_2015, author = {Liang, X. and Molenda, O. and Tang, S. and Edwards, E. A.}, title = {Identity and substrate specificity of reductive dehalogenases expressed in Dehalococcoides-containing enrichment cultures maintained on different chlorinated ethenes}, journal = {Applied and Environmental Microbiology}, volume = {81}, number = {14}, pages = {4626-4633}, ISSN = {00992240 (ISSN)}, DOI = {10.1128/AEM.00536-15}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84931436320&doi=10.1128%2fAEM.00536-15&partnerID=40&md5=d9f7711c226728333a71ae060f61a950}, year = {2015}, type = {Journal Article} } - K. Littunen, P. Kilpeläinen, K. Junka, M. Sipponen, E. R. Master, and J. Seppälä, “Effect of xylan structure on reactivity in graft copolymerization and subsequent binding to cellulose,” Biomacromolecules, vol. 16, iss. 4, pp. 1102-1111, 2015.
[Bibtex]@article{RN331_2015, author = {Littunen, K. and Kilpeläinen, P. and Junka, K. and Sipponen, M. and Master, E. R. and Seppälä, J.}, title = {Effect of xylan structure on reactivity in graft copolymerization and subsequent binding to cellulose}, journal = {Biomacromolecules}, volume = {16}, number = {4}, pages = {1102-1111}, ISSN = {15257797 (ISSN)}, DOI = {10.1021/bm501732b}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84927914358&doi=10.1021%2fbm501732b&partnerID=40&md5=0223faff9d92fe233fadfcf526e9f59f}, year = {2015}, type = {Journal Article} } - J. M. Luk, B. A. Saville, and H. L. MacLean, “Life cycle air emissions impacts and ownership costs of light-duty vehicles using natural gas as a primary energy source,” Environmental science and technology, vol. 49, iss. 8, pp. 5151-5160, 2015.
[Bibtex]@article{RN640_2015, author = {Luk, J. M. and Saville, B. A. and MacLean, H. L.}, title = {Life cycle air emissions impacts and ownership costs of light-duty vehicles using natural gas as a primary energy source}, journal = {Environmental Science and Technology}, volume = {49}, number = {8}, pages = {5151-5160}, ISSN = {0013936X (ISSN)}, DOI = {10.1021/es5045387}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84928380963&doi=10.1021%2fes5045387&partnerID=40&md5=0bc80da67208681794203cf7660b4c90}, year = {2015}, type = {Journal Article} } - R. Mahadevan, A. Von Kamp, and S. Klamt, “Genome-scale strain designs based on regulatory minimal cut sets,” Bioinformatics, vol. 31, iss. 17, pp. 2844-2851, 2015.
[Bibtex]@article{RN392_2015, author = {Mahadevan, R. and Von Kamp, A. and Klamt, S.}, title = {Genome-scale strain designs based on regulatory minimal cut sets}, journal = {Bioinformatics}, volume = {31}, number = {17}, pages = {2844-2851}, ISSN = {13674803 (ISSN)}, DOI = {10.1093/bioinformatics/btv217}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84940738929&doi=10.1093%2fbioinformatics%2fbtv217&partnerID=40&md5=14ec122c3aee5f9127fe5dc76942a058}, year = {2015}, type = {Journal Article} } - G. Mai-Gisondi, O. Turunen, O. Pastinen, N. Pahimanolis, and E. R. Master, “Enhancement of acetyl xylan esterase activity on cellulose acetate through fusion to a family 3 cellulose binding module,” Enzyme and microbial technology, vol. 79-80, pp. 27-33, 2015.
[Bibtex]@article{RN326_2015, author = {Mai-Gisondi, G. and Turunen, O. and Pastinen, O. and Pahimanolis, N. and Master, E. R.}, title = {Enhancement of acetyl xylan esterase activity on cellulose acetate through fusion to a family 3 cellulose binding module}, journal = {Enzyme and Microbial Technology}, volume = {79-80}, pages = {27-33}, ISSN = {01410229 (ISSN)}, DOI = {10.1016/j.enzmictec.2015.07.001}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84937433255&doi=10.1016%2fj.enzmictec.2015.07.001&partnerID=40&md5=83118120d5b77c6402e85907021663bd}, year = {2015}, type = {Journal Article} } - K. S. Makarova, Y. I. Wolf, O. S. Alkhnbashi, F. Costa, S. A. Shah, S. J. Saunders, R. Barrangou, S. J. J. Brouns, E. Charpentier, D. H. Haft, P. Horvath, S. Moineau, F. J. M. Mojica, R. M. Terns, M. P. Terns, M. F. White, A. F. Yakunin, R. A. Garrett, J. Van Der Oost, R. Backofen, and E. V. Koonin, “An updated evolutionary classification of crispr-cas systems,” Nature reviews microbiology, vol. 13, iss. 11, pp. 722-736, 2015.
[Bibtex]@article{RN791_2015, author = {Makarova, K. S. and Wolf, Y. I. and Alkhnbashi, O. S. and Costa, F. and Shah, S. A. and Saunders, S. J. and Barrangou, R. and Brouns, S. J. J. and Charpentier, E. and Haft, D. H. and Horvath, P. and Moineau, S. and Mojica, F. J. M. and Terns, R. M. and Terns, M. P. and White, M. F. and Yakunin, A. F. and Garrett, R. A. and Van Der Oost, J. and Backofen, R. and Koonin, E. V.}, title = {An updated evolutionary classification of CRISPR-Cas systems}, journal = {Nature Reviews Microbiology}, volume = {13}, number = {11}, pages = {722-736}, ISSN = {17401526 (ISSN)}, DOI = {10.1038/nrmicro3569}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84944449180&doi=10.1038%2fnrmicro3569&partnerID=40&md5=08412e544c4af33665caef4214a21622}, year = {2015}, type = {Journal Article} } - J. McKechnie, M. Pourbafrani, B. A. Saville, and H. L. MacLean, “Environmental and financial implications of ethanol as a bioethylene feedstock versus as a transportation fuel,” Environmental research letters, vol. 10, iss. 12, 2015.
[Bibtex]@article{RN637_2015, author = {McKechnie, J. and Pourbafrani, M. and Saville, B. A. and MacLean, H. L.}, title = {Environmental and financial implications of ethanol as a bioethylene feedstock versus as a transportation fuel}, journal = {Environmental Research Letters}, volume = {10}, number = {12}, ISSN = {17489318 (ISSN)}, DOI = {10.1088/1748-9326/10/12/124018}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84952894873&doi=10.1088%2f1748-9326%2f10%2f12%2f124018&partnerID=40&md5=f77e43ebf00d5863476f02fbddaf4ac3}, year = {2015}, type = {Journal Article} } - J. McKechnie, M. Pourbafrani, B. A. Saville, and H. L. MacLean, “Exploring impacts of process technology development and regional factors on life cycle greenhouse gas emissions of corn stover ethanol,” Renewable energy, vol. 76, pp. 726-734, 2015.
[Bibtex]@article{RN638_2015, author = {McKechnie, J. and Pourbafrani, M. and Saville, B. A. and MacLean, H. L.}, title = {Exploring impacts of process technology development and regional factors on life cycle greenhouse gas emissions of corn stover ethanol}, journal = {Renewable Energy}, volume = {76}, pages = {726-734}, ISSN = {09601481 (ISSN)}, DOI = {10.1016/j.renene.2014.11.088}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84919663630&doi=10.1016%2fj.renene.2014.11.088&partnerID=40&md5=959b08108a36c5f19a530e873d61c2d9}, year = {2015}, type = {Journal Article} } - T. Meyer and E. A. Edwards, “Corrigendum to “anaerobic digestion of pulp and paper mill wastewater and sludge”,” Water research, vol. 68, p. 849, 2015.
[Bibtex]@article{RN204_2015, author = {Meyer, T. and Edwards, E. A.}, title = {Corrigendum to "Anaerobic digestion of pulp and paper mill wastewater and sludge"}, journal = {Water Research}, volume = {68}, pages = {849}, ISSN = {00431354 (ISSN)}, DOI = {10.1016/j.watres.2014.10.059}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84922318993&doi=10.1016%2fj.watres.2014.10.059&partnerID=40&md5=55246133dc7995cb175c38c4c5fac499}, year = {2015}, type = {Journal Article} } - D. Meziane-Cherif, P. J. Stogios, E. Evdokimova, O. Egorova, A. Savchenko, and P. Courvalin, “Structural and functional adaptation of vancomycin resistance vant serine racemases,” Mbio, vol. 6, iss. 4, 2015.
[Bibtex]@article{RN899_2015, author = {Meziane-Cherif, D. and Stogios, P. J. and Evdokimova, E. and Egorova, O. and Savchenko, A. and Courvalin, P.}, title = {Structural and functional adaptation of vancomycin resistance vant serine racemases}, journal = {mBio}, volume = {6}, number = {4}, ISSN = {21612129 (ISSN)}, DOI = {10.1128/mBio.00806-15}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84940839113&doi=10.1128%2fmBio.00806-15&partnerID=40&md5=8c4b76a8d3b826a1816e0571b002a59b}, year = {2015}, type = {Journal Article} } - M. Morar, E. Evdokimova, C. Chang, A. W. Ensminger, and A. Savchenko, “Crystal structure of the legionella pneumophila lem 10 effector reveals a new member of the hd protein superfamily,” Proteins: structure, function and bioinformatics, vol. 83, iss. 12, pp. 2319-2325, 2015.
[Bibtex]@article{RN897_2015, author = {Morar, M. and Evdokimova, E. and Chang, C. and Ensminger, A. W. and Savchenko, A.}, title = {Crystal structure of the Legionella pneumophila lem 10 effector reveals a new member of the HD protein superfamily}, journal = {Proteins: Structure, Function and Bioinformatics}, volume = {83}, number = {12}, pages = {2319-2325}, ISSN = {08873585 (ISSN)}, DOI = {10.1002/prot.24933}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84954387672&doi=10.1002%2fprot.24933&partnerID=40&md5=2a0ae44dbfcd466091aba9c4df5f3250}, year = {2015}, type = {Journal Article} } - D. T. Mulder, J. B. McPhee, S. A. Reid-Yu, P. J. Stogios, A. Savchenko, and B. K. Coombes, “Multiple histidines in the periplasmic domain of the salmonella enterica sensor kinase ssra enhance signaling in response to extracellular acidification,” Molecular microbiology, vol. 95, iss. 4, pp. 678-691, 2015.
[Bibtex]@article{RN906_2015, author = {Mulder, D. T. and McPhee, J. B. and Reid-Yu, S. A. and Stogios, P. J. and Savchenko, A. and Coombes, B. K.}, title = {Multiple histidines in the periplasmic domain of the Salmonella enterica sensor kinase SsrA enhance signaling in response to extracellular acidification}, journal = {Molecular Microbiology}, volume = {95}, number = {4}, pages = {678-691}, ISSN = {0950382X (ISSN)}, DOI = {10.1111/mmi.12895}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84922511774&doi=10.1111%2fmmi.12895&partnerID=40&md5=6549ecfe0e526830154048ba4d77062a}, year = {2015}, type = {Journal Article} } - E. S. Nakayasu, M. A. Sydor, R. N. Brown, R. L. Sontag, T. J. P. Sobreira, G. W. Slysz, D. R. Humphrys, T. Skarina, O. Onoprienko, R. Di Leo, B. L. Deatherage Kaiser, J. Li, C. Ansong, E. D. Cambronne, R. D. Smith, A. Savchenko, and J. N. Adkins, “Identification of salmonella typhimurium deubiquitinase ssel substrates by immunoaffinity enrichment and quantitative proteomic analysis,” Journal of proteome research, vol. 14, iss. 9, pp. 4029-4038, 2015.
[Bibtex]@article{RN908_2015, author = {Nakayasu, E. S. and Sydor, M. A. and Brown, R. N. and Sontag, R. L. and Sobreira, T. J. P. and Slysz, G. W. and Humphrys, D. R. and Skarina, T. and Onoprienko, O. and Di Leo, R. and Deatherage Kaiser, B. L. and Li, J. and Ansong, C. and Cambronne, E. D. and Smith, R. D. and Savchenko, A. and Adkins, J. N.}, title = {Identification of Salmonella typhimurium deubiquitinase SseL substrates by immunoaffinity enrichment and quantitative proteomic analysis}, journal = {Journal of Proteome Research}, volume = {14}, number = {9}, pages = {4029-4038}, ISSN = {15353893 (ISSN)}, DOI = {10.1021/acs.jproteome.5b00574}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84941122119&doi=10.1021%2facs.jproteome.5b00574&partnerID=40&md5=1ec3fccebdf84ce9243609d199833f8e}, year = {2015}, type = {Journal Article} } - A. B. Namazi, D. G. Allen, and C. Q. Jia, “Effect of chemical components in white liquor on carbon activation,” Canadian journal of chemical engineering, vol. 93, iss. 10, pp. 1705-1712, 2015.
[Bibtex]@article{RN523_2015, author = {Namazi, A. B. and Allen, D. G. and Jia, C. Q.}, title = {Effect of chemical components in white liquor on carbon activation}, journal = {Canadian Journal of Chemical Engineering}, volume = {93}, number = {10}, pages = {1705-1712}, ISSN = {00084034 (ISSN)}, DOI = {10.1002/cjce.22281}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84942366267&doi=10.1002%2fcjce.22281&partnerID=40&md5=7b2d40e06754621fa0034349402ae403}, year = {2015}, type = {Journal Article} } - A. B. Namazi, D. G. Allen, and C. Q. Jia, “Microwave-assisted pyrolysis and activation of pulp mill sludge,” Biomass and bioenergy, vol. 73, pp. 217-224, 2015.
[Bibtex]@article{RN522_2015, author = {Namazi, A. B. and Allen, D. G. and Jia, C. Q.}, title = {Microwave-assisted pyrolysis and activation of pulp mill sludge}, journal = {Biomass and Bioenergy}, volume = {73}, pages = {217-224}, ISSN = {09619534 (ISSN)}, DOI = {10.1016/j.biombioe.2014.12.023}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84920997233&doi=10.1016%2fj.biombioe.2014.12.023&partnerID=40&md5=6e020f0cc4c35e97eba093d8c15b8fec}, year = {2015}, type = {Journal Article} } - A. B. Namazi, D. G. Allen, and C. Q. Jia, “Probing microwave heating of lignocellulosic biomasses,” Journal of analytical and applied pyrolysis, vol. 112, pp. 121-128, 2015.
[Bibtex]@article{RN596_2015, author = {Namazi, A. B. and Allen, D. G. and Jia, C. Q.}, title = {Probing microwave heating of lignocellulosic biomasses}, journal = {Journal of Analytical and Applied Pyrolysis}, volume = {112}, pages = {121-128}, ISSN = {01652370 (ISSN)}, DOI = {10.1016/j.jaap.2015.02.009}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84925357177&doi=10.1016%2fj.jaap.2015.02.009&partnerID=40&md5=37e42cbfb611682785bcc911eca5d57c}, year = {2015}, type = {Journal Article} } - N. Pahimanolis, P. Kilpeläinen, E. Master, H. Ilvesniemi, and J. Seppälä, “Novel thiol- amine- and amino acid functional xylan derivatives synthesized by thiol-ene reaction,” Carbohydrate polymers, vol. 131, pp. 392-398, 2015.
[Bibtex]@article{RN328_2015, author = {Pahimanolis, N. and Kilpeläinen, P. and Master, E. and Ilvesniemi, H. and Seppälä, J.}, title = {Novel thiol- amine- and amino acid functional xylan derivatives synthesized by thiol-ene reaction}, journal = {Carbohydrate Polymers}, volume = {131}, pages = {392-398}, ISSN = {01448617 (ISSN)}, DOI = {10.1016/j.carbpol.2015.06.007}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84933040299&doi=10.1016%2fj.carbpol.2015.06.007&partnerID=40&md5=4161f206da382fdbc93d035a089e2de2}, year = {2015}, type = {Journal Article} } - K. Parikka, E. Master, and M. Tenkanen, “Oxidation with galactose oxidase: multifunctional enzymatic catalysis,” Journal of molecular catalysis b: enzymatic, vol. 120, pp. 47-59, 2015.
[Bibtex]@article{RN327_2015, author = {Parikka, K. and Master, E. and Tenkanen, M.}, title = {Oxidation with galactose oxidase: Multifunctional enzymatic catalysis}, journal = {Journal of Molecular Catalysis B: Enzymatic}, volume = {120}, pages = {47-59}, ISSN = {13811177 (ISSN)}, DOI = {10.1016/j.molcatb.2015.06.006}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84937214091&doi=10.1016%2fj.molcatb.2015.06.006&partnerID=40&md5=0884d3baa8c50eb5c7185f66763ac140}, year = {2015}, type = {Journal Article} } - A. Placido, T. Hai, M. Ferrer, T. N. Chernikova, M. Distaso, D. Armstrong, A. F. Yakunin, S. V. Toshchakov, M. M. Yakimov, I. V. Kublanov, O. V. Golyshina, G. Pesole, L. R. Ceci, and P. N. Golyshin, “Diversity of hydrolases from hydrothermal vent sediments of the levante bay, vulcano island (aeolian archipelago) identified by activity-based metagenomics and biochemical characterization of new esterases and an arabinopyranosidase,” Applied microbiology and biotechnology, vol. 99, iss. 23, pp. 10031-10046, 2015.
[Bibtex]@article{RN781_2015, author = {Placido, A. and Hai, T. and Ferrer, M. and Chernikova, T. N. and Distaso, M. and Armstrong, D. and Yakunin, A. F. and Toshchakov, S. V. and Yakimov, M. M. and Kublanov, I. V. and Golyshina, O. V. and Pesole, G. and Ceci, L. R. and Golyshin, P. N.}, title = {Diversity of hydrolases from hydrothermal vent sediments of the Levante Bay, Vulcano Island (Aeolian archipelago) identified by activity-based metagenomics and biochemical characterization of new esterases and an arabinopyranosidase}, journal = {Applied Microbiology and Biotechnology}, volume = {99}, number = {23}, pages = {10031-10046}, ISSN = {01757598 (ISSN)}, DOI = {10.1007/s00253-015-6873-x}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84947029800&doi=10.1007%2fs00253-015-6873-x&partnerID=40&md5=e89cc6b808978374501e6356712bfdc6}, year = {2015}, type = {Journal Article} } - A. T. Quaile, M. L. Urbanus, P. J. Stogios, B. Nocek, T. Skarina, A. W. Ensminger, and A. Savchenko, “Molecular characterization of lubx: functional divergence of the u-box fold by legionella pneumophila,” Structure, vol. 23, iss. 8, pp. 1459-1469, 2015.
[Bibtex]@article{RN902_2015, author = {Quaile, A. T. and Urbanus, M. L. and Stogios, P. J. and Nocek, B. and Skarina, T. and Ensminger, A. W. and Savchenko, A.}, title = {Molecular Characterization of LubX: Functional Divergence of the U-Box Fold by Legionella pneumophila}, journal = {Structure}, volume = {23}, number = {8}, pages = {1459-1469}, ISSN = {09692126 (ISSN)}, DOI = {10.1016/j.str.2015.05.020}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84938750845&doi=10.1016%2fj.str.2015.05.020&partnerID=40&md5=ba093c70a8a8695c2c46446f6af039c5}, year = {2015}, type = {Journal Article} } - D. Rodenhizer, E. Gaude, D. Cojocari, R. Mahadevan, C. Frezza, B. G. Wouters, and A. P. McGuigan, “Erratum: a three-dimensional engineered tumour for spatial snapshot analysis of cell metabolism and phenotype in hypoxic gradients,” Nature materials, vol. 15, iss. 2, 2015.
[Bibtex]@article{RN482_2015, author = {Rodenhizer, D. and Gaude, E. and Cojocari, D. and Mahadevan, R. and Frezza, C. and Wouters, B. G. and McGuigan, A. P.}, title = {Erratum: A three-dimensional engineered tumour for spatial snapshot analysis of cell metabolism and phenotype in hypoxic gradients}, journal = {Nature Materials}, volume = {15}, number = {2}, ISSN = {14761122 (ISSN)}, DOI = {10.1038/nmat4515}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84955459965&doi=10.1038%2fnmat4515&partnerID=40&md5=21dbce64d4816a4689cafcb56111e10e}, year = {2015}, type = {Journal Article} } - N. Samadifard, C. E. Devine, E. Edwards, K. Mahadevan, and V. G. Papangelakis, “Ferric sulfate leaching of pyrrhotite tailings between 30 to 55 °c,” Minerals, vol. 5, iss. 4, pp. 801-814, 2015.
[Bibtex]@article{RN201_2015, author = {Samadifard, N. and Devine, C. E. and Edwards, E. and Mahadevan, K. and Papangelakis, V. G.}, title = {Ferric sulfate leaching of pyrrhotite tailings between 30 to 55 °C}, journal = {Minerals}, volume = {5}, number = {4}, pages = {801-814}, ISSN = {2075163X (ISSN)}, DOI = {10.3390/min5040526}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84948970345&doi=10.3390%2fmin5040526&partnerID=40&md5=614feb38753da65d39e607adf02e31cd}, year = {2015}, type = {Journal Article} } - P. J. Schnurr and D. G. Allen, “Factors affecting algae biofilm growth and lipid production: a review,” Renewable and sustainable energy reviews, vol. 52, pp. 418-429, 2015.
[Bibtex]@article{RN521_2015, author = {Schnurr, P. J. and Allen, D. G.}, title = {Factors affecting algae biofilm growth and lipid production: A review}, journal = {Renewable and Sustainable Energy Reviews}, volume = {52}, pages = {418-429}, ISSN = {13640321 (ISSN)}, DOI = {10.1016/j.rser.2015.07.090}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84939154070&doi=10.1016%2fj.rser.2015.07.090&partnerID=40&md5=d34e01284a9d151a64a02fa22add4b52}, year = {2015}, type = {Journal Article} } - M. J. Selig, L. G. Thygesen, C. Felby, and E. R. Master, “Debranching of soluble wheat arabinoxylan dramatically enhances recalcitrant binding to cellulose,” Biotechnology letters, vol. 37, iss. 3, pp. 633-641, 2015.
[Bibtex]@article{RN333_2015, author = {Selig, M. J. and Thygesen, L. G. and Felby, C. and Master, E. R.}, title = {Debranching of soluble wheat arabinoxylan dramatically enhances recalcitrant binding to cellulose}, journal = {Biotechnology Letters}, volume = {37}, number = {3}, pages = {633-641}, ISSN = {01415492 (ISSN)}, DOI = {10.1007/s10529-014-1705-0}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84925543688&doi=10.1007%2fs10529-014-1705-0&partnerID=40&md5=205e2a3e6a21bdec5723b1ff91ccbec7}, year = {2015}, type = {Journal Article} } - M. J. Selig, T. V. Vuong, M. Gudmundsson, Z. Forsberg, B. Westereng, C. Felby, and E. R. Master, “Modified cellobiohydrolase–cellulose interactions following treatment with lytic polysaccharide monooxygenase cels2 (sclpmo10c) observed by qcm-d,” Cellulose, vol. 22, iss. 4, pp. 2263-2270, 2015.
[Bibtex]@article{RN330_2015, author = {Selig, M. J. and Vuong, T. V. and Gudmundsson, M. and Forsberg, Z. and Westereng, B. and Felby, C. and Master, E. R.}, title = {Modified cellobiohydrolase–cellulose interactions following treatment with lytic polysaccharide monooxygenase CelS2 (ScLPMO10C) observed by QCM-D}, journal = {Cellulose}, volume = {22}, number = {4}, pages = {2263-2270}, ISSN = {09690239 (ISSN)}, DOI = {10.1007/s10570-015-0635-x}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84937970292&doi=10.1007%2fs10570-015-0635-x&partnerID=40&md5=b23d416d01c7cc5832f385003a9bbfd9}, year = {2015}, type = {Journal Article} } - E. Semenova, K. Kuznedelov, K. A. Datsenko, P. M. Boudry, E. E. Savitskaya, S. Medvedeva, N. Beloglazova, M. Logacheva, A. F. Yakunin, and K. Severinov, “The cas6e ribonuclease is not required for interference and adaptation by the e. coli type i-e crispr-cas system,” Nucleic acids research, vol. 43, iss. 12, pp. 6049-6061, 2015.
[Bibtex]@article{RN785_2015, author = {Semenova, E. and Kuznedelov, K. and Datsenko, K. A. and Boudry, P. M. and Savitskaya, E. E. and Medvedeva, S. and Beloglazova, N. and Logacheva, M. and Yakunin, A. F. and Severinov, K.}, title = {The Cas6e ribonuclease is not required for interference and adaptation by the E. Coli type I-E CRISPR-Cas system}, journal = {Nucleic Acids Research}, volume = {43}, number = {12}, pages = {6049-6061}, ISSN = {03051048 (ISSN)}, DOI = {10.1093/nar/gkv546}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84942156327&doi=10.1093%2fnar%2fgkv546&partnerID=40&md5=9911622085ba4449b36369ef975008ba}, year = {2015}, type = {Journal Article} } - M. A. Serbanescu, M. Cordova, K. Krastel, R. Flick, N. Beloglazova, A. Latos, A. F. Yakunin, D. B. Senadheera, and D. G. Cvitkovitch, “Role of the streptococcus mutans crispr-cas systems in immunity and cell physiology,” Journal of bacteriology, vol. 197, iss. 4, pp. 749-761, 2015.
[Bibtex]@article{RN787_2015, author = {Serbanescu, M. A. and Cordova, M. and Krastel, K. and Flick, R. and Beloglazova, N. and Latos, A. and Yakunin, A. F. and Senadheera, D. B. and Cvitkovitch, D. G.}, title = {Role of the Streptococcus mutans CRISPR-Cas systems in immunity and cell physiology}, journal = {Journal of Bacteriology}, volume = {197}, number = {4}, pages = {749-761}, ISSN = {00219193 (ISSN)}, DOI = {10.1128/JB.02333-14}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84921739341&doi=10.1128%2fJB.02333-14&partnerID=40&md5=14351483d89fa7bc4b5fc0c5e6f1de2d}, year = {2015}, type = {Journal Article} } - S. Sinichi and L. L. Diosady, “Isopropyl alcohol extraction of mustard oil,” International news on fats, oils and related materials, vol. 26, iss. 3, pp. 179-182, 2015.
[Bibtex]@article{RN682_2015, author = {Sinichi, S. and Diosady, L. L.}, title = {Isopropyl alcohol extraction of mustard oil}, journal = {International News on Fats, Oils and Related Materials}, volume = {26}, number = {3}, pages = {179-182}, ISSN = {08978026 (ISSN)}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84928474573&partnerID=40&md5=3f3ed976b5b05b71e3581799b2af9dbb}, year = {2015}, type = {Journal Article} } - J. P. Soleas, T. K. Waddell, and A. P. McGuigan, “Topographically grooved gel inserts for aligning epithelial cells during air-liquid-interface culture,” Biomaterials science, vol. 3, iss. 1, pp. 121-133, 2015.
[Bibtex]@article{RN486_2015, author = {Soleas, J. P. and Waddell, T. K. and McGuigan, A. P.}, title = {Topographically grooved gel inserts for aligning epithelial cells during air-liquid-interface culture}, journal = {Biomaterials Science}, volume = {3}, number = {1}, pages = {121-133}, ISSN = {20474830 (ISSN)}, DOI = {10.1039/c4bm00237g}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84914147134&doi=10.1039%2fc4bm00237g&partnerID=40&md5=2f412efd5893246755f97e280a81dffe}, year = {2015}, type = {Journal Article} } - R. L. Sontag, C. Mihai, G. Orr, A. Savchenko, T. Skarina, H. Cui, J. R. Cort, J. N. Adkins, and R. N. Brown, “Electroporation of functional bacterial effectors into mammalian cells,” Journal of visualized experiments, iss. 95, 2015.
[Bibtex]@article{RN903_2015, author = {Sontag, R. L. and Mihai, C. and Orr, G. and Savchenko, A. and Skarina, T. and Cui, H. and Cort, J. R. and Adkins, J. N. and Brown, R. N.}, title = {Electroporation of functional bacterial effectors into mammalian cells}, journal = {Journal of Visualized Experiments}, number = {95}, ISSN = {1940087X (ISSN)}, DOI = {10.3791/52296}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84921652879&doi=10.3791%2f52296&partnerID=40&md5=a500e4b2531e752db0f4317885f06b55}, year = {2015}, type = {Journal Article} } - S. Srinivasan, W. R. Cluett, and R. Mahadevan, “Constructing kinetic models of metabolism at genome-scales: a review,” Biotechnology journal, vol. 10, iss. 9, pp. 1345-1359, 2015.
[Bibtex]@article{RN393_2015, author = {Srinivasan, S. and Cluett, W. R. and Mahadevan, R.}, title = {Constructing kinetic models of metabolism at genome-scales: A review}, journal = {Biotechnology Journal}, volume = {10}, number = {9}, pages = {1345-1359}, ISSN = {18606768 (ISSN)}, DOI = {10.1002/biot.201400522}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84940557767&doi=10.1002%2fbiot.201400522&partnerID=40&md5=272df642669276a8914ec718bd5dce4a}, year = {2015}, type = {Journal Article} } - P. J. Stogios, E. Evdokimova, M. Morar, K. Koteva, G. D. Wright, P. Courvalin, and A. Savchenko, “Structural and functional plasticity of antibiotic resistance nucleotidylyltransferases revealed by molecular characterization of lincosamide nucleotidylyltransferases lnu(a) and lnu(d),” Journal of molecular biology, vol. 427, iss. 12, pp. 2229-2243, 2015.
[Bibtex]@article{RN901_2015, author = {Stogios, P. J. and Evdokimova, E. and Morar, M. and Koteva, K. and Wright, G. D. and Courvalin, P. and Savchenko, A.}, title = {Structural and functional plasticity of antibiotic resistance nucleotidylyltransferases revealed by molecular characterization of lincosamide nucleotidylyltransferases Lnu(A) and Lnu(D)}, journal = {Journal of Molecular Biology}, volume = {427}, number = {12}, pages = {2229-2243}, ISSN = {00222836 (ISSN)}, DOI = {10.1016/j.jmb.2015.04.008}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84937763868&doi=10.1016%2fj.jmb.2015.04.008&partnerID=40&md5=2a565c7a563770be3ef53d0a1bc2f336}, year = {2015}, type = {Journal Article} } - S. Tabtabaei, D. G. B. Boocock, and L. L. Diosady, “Biodiesel production from mustard emulsion by a combined destabilization/adsorption process,” Jaocs, journal of the american oil chemists’ society, vol. 92, iss. 8, pp. 1205-1217, 2015.
[Bibtex]@article{RN681_2015, author = {Tabtabaei, S. and Boocock, D. G. B. and Diosady, L. L.}, title = {Biodiesel production from mustard emulsion by a combined destabilization/adsorption process}, journal = {JAOCS, Journal of the American Oil Chemists' Society}, volume = {92}, number = {8}, pages = {1205-1217}, ISSN = {0003021X (ISSN)}, DOI = {10.1007/s11746-015-2677-5}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84938555826&doi=10.1007%2fs11746-015-2677-5&partnerID=40&md5=431f5bcd90d2903dcaffad9e98358b31}, year = {2015}, type = {Journal Article} } - A. Tchigvintsev, H. Tran, A. Popovic, F. Kovacic, G. Brown, R. Flick, M. Hajighasemi, O. Egorova, J. C. Somody, D. Tchigvintsev, A. Khusnutdinova, T. N. Chernikova, O. V. Golyshina, M. M. Yakimov, A. Savchenko, P. N. Golyshin, K. E. Jaeger, and A. F. Yakunin, “The environment shapes microbial enzymes: five cold-active and salt-resistant carboxylesterases from marine metagenomes,” Applied microbiology and biotechnology, vol. 99, iss. 5, pp. 2165-2178, 2015.
[Bibtex]@article{RN789_2015, author = {Tchigvintsev, A. and Tran, H. and Popovic, A. and Kovacic, F. and Brown, G. and Flick, R. and Hajighasemi, M. and Egorova, O. and Somody, J. C. and Tchigvintsev, D. and Khusnutdinova, A. and Chernikova, T. N. and Golyshina, O. V. and Yakimov, M. M. and Savchenko, A. and Golyshin, P. N. and Jaeger, K. E. and Yakunin, A. F.}, title = {The environment shapes microbial enzymes: Five cold-active and salt-resistant carboxylesterases from marine metagenomes}, journal = {Applied Microbiology and Biotechnology}, volume = {99}, number = {5}, pages = {2165-2178}, ISSN = {01757598 (ISSN)}, DOI = {10.1007/s00253-014-6038-3}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84923261245&doi=10.1007%2fs00253-014-6038-3&partnerID=40&md5=e167e38b85ce4a60394284dd820bc3de}, year = {2015}, type = {Journal Article} } - S. Toh, D. Holbrook-Smith, P. J. Stogios, O. Onopriyenko, S. Lumba, Y. Tsuchiya, A. Savchenko, and P. McCourt, “Structure-function analysis identifies highly sensitive strigolactone receptors in striga,” Science, vol. 350, iss. 6257, pp. 203-207, 2015.
[Bibtex]@article{RN898_2015, author = {Toh, S. and Holbrook-Smith, D. and Stogios, P. J. and Onopriyenko, O. and Lumba, S. and Tsuchiya, Y. and Savchenko, A. and McCourt, P.}, title = {Structure-function analysis identifies highly sensitive strigolactone receptors in Striga}, journal = {Science}, volume = {350}, number = {6257}, pages = {203-207}, ISSN = {00368075 (ISSN)}, DOI = {10.1126/science.aac9476}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84943534072&doi=10.1126%2fscience.aac9476&partnerID=40&md5=3ae8921722197862082f36d02a07c523}, year = {2015}, type = {Journal Article} } - A. Y. L. Tsai, R. E. Goacher, and E. R. Master, “Detecting changes in arabidopsis cell wall composition using time-of-flight secondary ion mass spectrometry,” Surface and interface analysis, vol. 47, iss. 5, pp. 626-631, 2015.
[Bibtex]@article{RN334_2015, author = {Tsai, A. Y. L. and Goacher, R. E. and Master, E. R.}, title = {Detecting changes in Arabidopsis cell wall composition using time-of-flight secondary ion mass spectrometry}, journal = {Surface and Interface Analysis}, volume = {47}, number = {5}, pages = {626-631}, ISSN = {01422421 (ISSN)}, DOI = {10.1002/sia.5756}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84927910963&doi=10.1002%2fsia.5756&partnerID=40&md5=0bf54c911e46fbe3139ffc204719fbc7}, year = {2015}, type = {Journal Article} } - N. Venayak, N. Anesiadis, W. R. Cluett, and R. Mahadevan, “Engineering metabolism through dynamic control,” Current opinion in biotechnology, vol. 34, pp. 142-152, 2015.
[Bibtex]@article{RN386_2015, author = {Venayak, N. and Anesiadis, N. and Cluett, W. R. and Mahadevan, R.}, title = {Engineering metabolism through dynamic control}, journal = {Current Opinion in Biotechnology}, volume = {34}, pages = {142-152}, ISSN = {09581669 (ISSN)}, DOI = {10.1016/j.copbio.2014.12.022}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84921479351&doi=10.1016%2fj.copbio.2014.12.022&partnerID=40&md5=e5e133361b673480ee97b88d7da10f9a}, year = {2015}, type = {Journal Article} } - J. Wallenius, N. Pahimanolis, J. Zoppe, P. Kilpeläinen, E. Master, H. Ilvesniemi, J. Seppälä, T. Eerikäinen, and H. Ojamo, “Continuous propionic acid production with propionibacterium acidipropionici immobilized in a novel xylan hydrogel matrix,” Bioresource technology, vol. 197, pp. 1-6, 2015.
[Bibtex]@article{RN325_2015, author = {Wallenius, J. and Pahimanolis, N. and Zoppe, J. and Kilpeläinen, P. and Master, E. and Ilvesniemi, H. and Seppälä, J. and Eerikäinen, T. and Ojamo, H.}, title = {Continuous propionic acid production with Propionibacterium acidipropionici immobilized in a novel xylan hydrogel matrix}, journal = {Bioresource Technology}, volume = {197}, pages = {1-6}, ISSN = {09608524 (ISSN)}, DOI = {10.1016/j.biortech.2015.08.037}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84939814212&doi=10.1016%2fj.biortech.2015.08.037&partnerID=40&md5=e720adc9f748cb20c17d4ac6ea3c5c0c}, year = {2015}, type = {Journal Article} } - L. Yang, S. Srinivasan, R. Mahadevan, and W. R. Cluett, “Characterizing metabolic pathway diversification in the context of perturbation size,” Metabolic engineering, vol. 28, pp. 114-122, 2015.
[Bibtex]@article{RN390_2015, author = {Yang, L. and Srinivasan, S. and Mahadevan, R. and Cluett, W. R.}, title = {Characterizing metabolic pathway diversification in the context of perturbation size}, journal = {Metabolic Engineering}, volume = {28}, pages = {114-122}, ISSN = {10967176 (ISSN)}, DOI = {10.1016/j.ymben.2014.11.013}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84921301913&doi=10.1016%2fj.ymben.2014.11.013&partnerID=40&md5=44ef76b4bebd8a5e82c86cba04376157}, year = {2015}, type = {Journal Article} }
2014
- Y. Azimi, D. G. Allen, and R. R. Farnood, “Enhancing disinfection by advanced oxidation under uv irradiation in polyphosphate-containing wastewater flocs,” Water research, vol. 54, pp. 179-187, 2014.
[Bibtex]@article{RN598_2014, author = {Azimi, Y. and Allen, D. G. and Farnood, R. R.}, title = {Enhancing disinfection by advanced oxidation under UV irradiation in polyphosphate-containing wastewater flocs}, journal = {Water Research}, volume = {54}, pages = {179-187}, ISSN = {00431354 (ISSN)}, DOI = {10.1016/j.watres.2014.01.011}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84894386519&doi=10.1016%2fj.watres.2014.01.011&partnerID=40&md5=e83426f4ccd40b186626c7891ae8ade6}, year = {2014}, type = {Journal Article} } - Y. Azimi, D. G. Allen, P. Seto, and R. Farnood, “Effect of activated sludge retention time, operating temperature, and influent phosphorus deficiency on floc physicochemical characteristics and uv disinfection,” Industrial and engineering chemistry research, vol. 53, iss. 31, pp. 12485-12493, 2014.
[Bibtex]@article{RN597_2014, author = {Azimi, Y. and Allen, D. G. and Seto, P. and Farnood, R.}, title = {Effect of activated sludge retention time, operating temperature, and influent phosphorus deficiency on floc physicochemical characteristics and UV disinfection}, journal = {Industrial and Engineering Chemistry Research}, volume = {53}, number = {31}, pages = {12485-12493}, ISSN = {08885885 (ISSN)}, DOI = {10.1021/ie5012068}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84905674377&doi=10.1021%2fie5012068&partnerID=40&md5=07895e5061edbe71e10069f15c20b8c9}, year = {2014}, type = {Journal Article} } - J. Bajor, K. L. Tkaczuk, M. Chruszcz, H. Chapman, O. Kagan, A. Savchenko, and W. Minor, “The crystal structure of pyrimidine/thiamin biosynthesis precursor-like domain-containing protein cae31940 from proteobacterium bordetella bronchiseptica rb50, and evolutionary insight into the nmt1/thi5 family,” Journal of structural and functional genomics, vol. 15, iss. 2, pp. 73-81, 2014.
[Bibtex]@article{RN919_2014, author = {Bajor, J. and Tkaczuk, K. L. and Chruszcz, M. and Chapman, H. and Kagan, O. and Savchenko, A. and Minor, W.}, title = {The crystal structure of pyrimidine/thiamin biosynthesis precursor-like domain-containing protein CAE31940 from proteobacterium Bordetella bronchiseptica RB50, and evolutionary insight into the NMT1/THI5 family}, journal = {Journal of Structural and Functional Genomics}, volume = {15}, number = {2}, pages = {73-81}, ISSN = {1345711X (ISSN)}, DOI = {10.1007/s10969-014-9180-3}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84904063577&doi=10.1007%2fs10969-014-9180-3&partnerID=40&md5=61d99b8bb7bba53e983b219833c76e33}, year = {2014}, type = {Journal Article} } - N. Bourdakos, E. Marsili, and R. Mahadevan, “A defined co-culture of geobacter sulfurreducens and escherichia coli in a membrane-less microbial fuel cell,” Biotechnology and bioengineering, vol. 111, iss. 4, pp. 709-718, 2014.
[Bibtex]@article{RN399_2014, author = {Bourdakos, N. and Marsili, E. and Mahadevan, R.}, title = {A defined co-culture of Geobacter sulfurreducens and Escherichia coli in a membrane-less microbial fuel cell}, journal = {Biotechnology and Bioengineering}, volume = {111}, number = {4}, pages = {709-718}, ISSN = {00063592 (ISSN)}, DOI = {10.1002/bit.25137}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84894282258&doi=10.1002%2fbit.25137&partnerID=40&md5=1ee2cd44fbfd26b5d4898aafe4afd0c5}, year = {2014}, type = {Journal Article} } - N. Bourdakos, E. Marsili, and R. Mahadevan, “A defined co-culture of geobacter sulfurreducens and escherichia coli in a membrane-less microbial fuel cell,” Biotechnol bioeng, vol. 111, iss. 4, pp. 709-18, 2014.
[Bibtex]@article{RN1077_2014, author = {Bourdakos, N. and Marsili, E. and Mahadevan, R.}, title = {A defined co-culture of Geobacter sulfurreducens and Escherichia coli in a membrane-less microbial fuel cell}, journal = {Biotechnol Bioeng}, volume = {111}, number = {4}, pages = {709-18}, ISSN = {1097-0290 (Electronic) 0006-3592 (Linking)}, DOI = {10.1002/bit.25137}, url = {http://www.ncbi.nlm.nih.gov/pubmed/24155100}, year = {2014}, type = {Journal Article} } - C. Chen, J. C. Joo, G. Brown, E. Stolnikova, A. S. Halavaty, A. Savchenko, W. F. Anderson, and A. F. Yakunin, “Structure-based mutational studies of substrate inhibition of betaine aldehyde dehydrogenase betb from staphylococcus aureus,” Applied and environmental microbiology, vol. 80, iss. 13, pp. 3992-4002, 2014.
[Bibtex]@article{RN794_2014, author = {Chen, C. and Joo, J. C. and Brown, G. and Stolnikova, E. and Halavaty, A. S. and Savchenko, A. and Anderson, W. F. and Yakunin, A. F.}, title = {Structure-based mutational studies of substrate inhibition of betaine aldehyde dehydrogenase BetB from Staphylococcus aureus}, journal = {Applied and Environmental Microbiology}, volume = {80}, number = {13}, pages = {3992-4002}, ISSN = {00992240 (ISSN)}, DOI = {10.1128/AEM.00215-14}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84902132974&doi=10.1128%2fAEM.00215-14&partnerID=40&md5=661067980e5a5006c0fa23ee2ccbcb91}, year = {2014}, type = {Journal Article} } - E. A. Edwards, “Breathing the unbreathable,” Science, vol. 346, iss. 6208, pp. 424-425, 2014.
[Bibtex]@article{RN209_2014, author = {Edwards, E. A.}, title = {Breathing the unbreathable}, journal = {Science}, volume = {346}, number = {6208}, pages = {424-425}, ISSN = {00368075 (ISSN)}, DOI = {10.1126/science.1261194}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84908237145&doi=10.1126%2fscience.1261194&partnerID=40&md5=8c96b379a8eb696d42376096b1fcd8d7}, year = {2014}, type = {Journal Article} } - A. Eletsky, K. Michalska, S. Houliston, Q. Zhang, M. D. Daily, X. Xu, H. Cui, A. Yee, A. Lemak, B. Wu, M. Garcia, M. C. Burnet, K. M. Meyer, U. K. Aryal, O. Sanchez, C. Ansong, R. Xiao, T. B. Acton, J. N. Adkins, G. T. Montelione, A. Joachimiak, C. H. Arrowsmith, A. Savchenko, T. Szyperski, and J. R. Cort, “Structural and functional characterization of duf1471 domains of salmonella proteins srfn, ydgh/sssb, and yaho,” Plos one, vol. 9, iss. 7, 2014.
[Bibtex]@article{RN913_2014, author = {Eletsky, A. and Michalska, K. and Houliston, S. and Zhang, Q. and Daily, M. D. and Xu, X. and Cui, H. and Yee, A. and Lemak, A. and Wu, B. and Garcia, M. and Burnet, M. C. and Meyer, K. M. and Aryal, U. K. and Sanchez, O. and Ansong, C. and Xiao, R. and Acton, T. B. and Adkins, J. N. and Montelione, G. T. and Joachimiak, A. and Arrowsmith, C. H. and Savchenko, A. and Szyperski, T. and Cort, J. R.}, title = {Structural and functional characterization of DUF1471 domains of Salmonella proteins SrfN, YdgH/SssB, and YahO}, journal = {PLoS ONE}, volume = {9}, number = {7}, ISSN = {19326203 (ISSN)}, DOI = {10.1371/journal.pone.0101787}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84904258220&doi=10.1371%2fjournal.pone.0101787&partnerID=40&md5=62ac60b90e9c205225a8501118719d6e}, year = {2014}, type = {Journal Article} } - A. Eshaghi, S. Shalhoub, P. Rosenfeld, A. Li, R. R. Higgins, P. J. Stogios, A. Savchenko, N. Bastien, Y. Li, C. Rotstein, and J. B. Gubbaya, “Multiple influenza a (h3n2) mutations conferring resistance to neuraminidase inhibitors in a bone marrow transplant recipient,” Antimicrobial agents and chemotherapy, vol. 58, iss. 12, pp. 7188-7197, 2014.
[Bibtex]@article{RN1030_2014, author = {Eshaghi, A. and Shalhoub, S. and Rosenfeld, P. and Li, A. and Higgins, R. R. and Stogios, P. J. and Savchenko, A. and Bastien, N. and Li, Y. and Rotstein, C. and Gubbaya, J. B.}, title = {Multiple influenza a (H3N2) mutations conferring resistance to neuraminidase inhibitors in a bone marrow transplant recipient}, journal = {Antimicrobial Agents and Chemotherapy}, volume = {58}, number = {12}, pages = {7188-7197}, ISSN = {00664804 (ISSN)}, DOI = {10.1128/AAC.03667-14}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84912058790&doi=10.1128%2fAAC.03667-14&partnerID=40&md5=5471385ea297a397dc9aaac3e0879a00}, year = {2014}, type = {Journal Article} } - E. V. Filippova, K. L. Tkaczuk, M. Chruszcz, X. Xu, A. Savchenko, A. Edwards, and W. Minor, “Structural characterization of the putative abc-type 2 transporter from thermotoga maritima msb8,” Journal of structural and functional genomics, vol. 15, iss. 4, pp. 215-222, 2014.
[Bibtex]@article{RN920_2014, author = {Filippova, E. V. and Tkaczuk, K. L. and Chruszcz, M. and Xu, X. and Savchenko, A. and Edwards, A. and Minor, W.}, title = {Structural characterization of the putative ABC-type 2 transporter from Thermotoga maritima MSB8}, journal = {Journal of Structural and Functional Genomics}, volume = {15}, number = {4}, pages = {215-222}, ISSN = {1345711X (ISSN)}, DOI = {10.1007/s10969-014-9189-7}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84911959945&doi=10.1007%2fs10969-014-9189-7&partnerID=40&md5=4e95130c04637818b39f93eb0c787083}, year = {2014}, type = {Journal Article} } - P. Gawand and R. Mahadevan, “Engineering escherichia coli for d-ribose production from glucose-xylose mixtures,” Industrial biotechnology, vol. 10, iss. 2, pp. 106-114, 2014.
[Bibtex]@article{RN397_2014, author = {Gawand, P. and Mahadevan, R.}, title = {Engineering Escherichia coli for D-ribose production from glucose-xylose mixtures}, journal = {Industrial Biotechnology}, volume = {10}, number = {2}, pages = {106-114}, ISSN = {15509087 (ISSN)}, DOI = {10.1089/ind.2013.0028}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84898909919&doi=10.1089%2find.2013.0028&partnerID=40&md5=15a3db6920cfb233f7fa232c58d88f90}, year = {2014}, type = {Journal Article} } - R. E. Goacher, M. J. Selig, and E. R. Master, “Advancing lignocellulose bioconversion through direct assessment of enzyme action on insoluble substrates,” Current opinion in biotechnology, vol. 27, pp. 123-133, 2014.
[Bibtex]@article{RN339_2014, author = {Goacher, R. E. and Selig, M. J. and Master, E. R.}, title = {Advancing lignocellulose bioconversion through direct assessment of enzyme action on insoluble substrates}, journal = {Current Opinion in Biotechnology}, volume = {27}, pages = {123-133}, ISSN = {09581669 (ISSN)}, DOI = {10.1016/j.copbio.2014.01.009}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84896722084&doi=10.1016%2fj.copbio.2014.01.009&partnerID=40&md5=3fa9d87ab1150fa4d1f2397d44238d3a}, year = {2014}, type = {Journal Article} } - R. E. Goacher, M. J. Selig, and E. R. Master, “Advancing lignocellulose bioconversion through direct assessment of enzyme action on insoluble substrates,” Curr opin biotechnol, vol. 27, pp. 123-33, 2014.
[Bibtex]@article{RN1079_2014, author = {Goacher, R. E. and Selig, M. J. and Master, E. R.}, title = {Advancing lignocellulose bioconversion through direct assessment of enzyme action on insoluble substrates}, journal = {Curr Opin Biotechnol}, volume = {27}, pages = {123-33}, ISSN = {1879-0429 (Electronic) 0958-1669 (Linking)}, DOI = {10.1016/j.copbio.2014.01.009}, url = {http://www.ncbi.nlm.nih.gov/pubmed/24525082}, year = {2014}, type = {Journal Article} } - A. S. Halavaty, S. M. Anderson, Z. Wawrzak, M. Kudritska, T. Skarina, W. F. Anderson, and A. Savchenko, “Type iii effector nleh2 from escherichia coli o157:h7 str. sakai features an atypical protein kinase domain,” Biochemistry, vol. 53, iss. 15, pp. 2433-2435, 2014.
[Bibtex]@article{RN917_2014, author = {Halavaty, A. S. and Anderson, S. M. and Wawrzak, Z. and Kudritska, M. and Skarina, T. and Anderson, W. F. and Savchenko, A.}, title = {Type III effector NleH2 from Escherichia coli O157:H7 str. Sakai features an atypical protein kinase domain}, journal = {Biochemistry}, volume = {53}, number = {15}, pages = {2433-2435}, ISSN = {00062960 (ISSN)}, DOI = {10.1021/bi500016j}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84899449471&doi=10.1021%2fbi500016j&partnerID=40&md5=9a67b28f07f6fd9140d8bc677698d869}, year = {2014}, type = {Journal Article} } - C. Hori, T. Ishida, K. Igarashi, M. Samejima, H. Suzuki, E. Master, P. Ferreira, F. J. Ruiz-Dueñas, B. Held, P. Canessa, L. F. Larrondo, M. Schmoll, I. S. Druzhinina, C. P. Kubicek, J. A. Gaskell, P. Kersten, F. St. John, J. Glasner, G. Sabat, S. Splinter BonDurant, K. Syed, J. Yadav, A. C. Mgbeahuruike, A. Kovalchuk, F. O. Asiegbu, G. Lackner, D. Hoffmeister, J. Rencoret, A. Gutiérrez, H. Sun, E. Lindquist, K. Barry, R. Riley, I. V. Grigoriev, B. Henrissat, U. Kües, R. M. Berka, A. T. Martínez, S. F. Covert, R. A. Blanchette, and D. Cullen, “Analysis of the phlebiopsis gigantea genome, transcriptome and secretome provides insight into its pioneer colonization strategies of wood,” Plos genetics, vol. 10, iss. 12, 2014.
[Bibtex]@article{RN343_2014, author = {Hori, C. and Ishida, T. and Igarashi, K. and Samejima, M. and Suzuki, H. and Master, E. and Ferreira, P. and Ruiz-Dueñas, F. J. and Held, B. and Canessa, P. and Larrondo, L. F. and Schmoll, M. and Druzhinina, I. S. and Kubicek, C. P. and Gaskell, J. A. and Kersten, P. and St. John, F. and Glasner, J. and Sabat, G. and Splinter BonDurant, S. and Syed, K. and Yadav, J. and Mgbeahuruike, A. C. and Kovalchuk, A. and Asiegbu, F. O. and Lackner, G. and Hoffmeister, D. and Rencoret, J. and Gutiérrez, A. and Sun, H. and Lindquist, E. and Barry, K. and Riley, R. and Grigoriev, I. V. and Henrissat, B. and Kües, U. and Berka, R. M. and Martínez, A. T. and Covert, S. F. and Blanchette, R. A. and Cullen, D.}, title = {Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood}, journal = {PLoS Genetics}, volume = {10}, number = {12}, ISSN = {15537390 (ISSN)}, DOI = {10.1371/journal.pgen.1004759}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84919682712&doi=10.1371%2fjournal.pgen.1004759&partnerID=40&md5=d82c7237315a966c2ef957c5d38dfcc4}, year = {2014}, type = {Journal Article} } - C. N. Hoyland, C. Aldridge, R. M. Cleverley, M. C. Duchêne, G. Minasov, O. Onopriyenko, K. Sidiq, P. J. Stogios, W. F. Anderson, R. A. Daniel, A. Savchenko, W. Vollmer, and R. J. Lewis, “Structure of the ldcb ld-carboxypeptidase reveals the molecular basis of peptidoglycan recognition,” Structure, vol. 22, iss. 7, pp. 949-960, 2014.
[Bibtex]@article{RN914_2014, author = {Hoyland, C. N. and Aldridge, C. and Cleverley, R. M. and Duchêne, M. C. and Minasov, G. and Onopriyenko, O. and Sidiq, K. and Stogios, P. J. and Anderson, W. F. and Daniel, R. A. and Savchenko, A. and Vollmer, W. and Lewis, R. J.}, title = {Structure of the LdcB LD-carboxypeptidase reveals the molecular basis of peptidoglycan recognition}, journal = {Structure}, volume = {22}, number = {7}, pages = {949-960}, ISSN = {09692126 (ISSN)}, DOI = {10.1016/j.str.2014.04.015}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84904103328&doi=10.1016%2fj.str.2014.04.015&partnerID=40&md5=580eba134d85489ab4eab1987f406af3}, year = {2014}, type = {Journal Article} } - M. A. Islam, A. S. Waller, L. A. Hug, N. J. Provart, E. A. Edwards, and R. Mahadevan, “New insights into dehalococcoides mccartyi metabolism from a reconstructed metabolic network-based systems-level analysis of d. mccartyi transcriptomes,” Plos one, vol. 9, iss. 4, 2014.
[Bibtex]@article{RN211_2014, author = {Islam, M. A. and Waller, A. S. and Hug, L. A. and Provart, N. J. and Edwards, E. 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[Bibtex]@article{RN398_2014, author = {Jayasinghe, N. and Franks, A. and Nevin, K. P. and Mahadevan, R.}, title = {Metabolic modeling of spatial heterogeneity of biofilms in microbial fuel cells reveals substrate limitations in electrical current generation}, journal = {Biotechnology Journal}, volume = {9}, number = {10}, pages = {1350-1361}, ISSN = {18606768 (ISSN)}, DOI = {10.1002/biot.201400068}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84908465818&doi=10.1002%2fbiot.201400068&partnerID=40&md5=966df8e99b5a6ff38b869fee7d713768}, year = {2014}, type = {Journal Article} } - D. Jeremic, R. E. Goacher, R. Yan, C. Karunakaran, and E. R. Master, “Direct and up-close views of plant cell walls show a leading role for lignin-modifying enzymes on ensuing xylanases,” Biotechnology for biofuels, vol. 7, iss. 1, 2014.
[Bibtex]@article{RN340_2014, author = {Jeremic, D. and Goacher, R. E. and Yan, R. and Karunakaran, C. and Master, E. R.}, title = {Direct and up-close views of plant cell walls show a leading role for lignin-modifying enzymes on ensuing xylanases}, journal = {Biotechnology for Biofuels}, volume = {7}, number = {1}, ISSN = {17546834 (ISSN)}, DOI = {10.1186/s13068-014-0176-9}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84924156036&doi=10.1186%2fs13068-014-0176-9&partnerID=40&md5=ef48ff3a325996cdb1c51f3d03c89517}, year = {2014}, type = {Journal Article} } - S. D. Justicia-Leon, S. Higgins, E. E. Mack, D. R. Griffiths, S. Tang, E. A. Edwards, and F. E. Löffler, “Bioaugmentation with distinct dehalobacter strains achieves chloroform detoxification in microcosms,” Environmental science and technology, vol. 48, iss. 3, pp. 1851-1858, 2014.
[Bibtex]@article{RN212_2014, author = {Justicia-Leon, S. D. and Higgins, S. and Mack, E. E. and Griffiths, D. R. and Tang, S. and Edwards, E. A. and Löffler, F. E.}, title = {Bioaugmentation with distinct Dehalobacter strains achieves chloroform detoxification in microcosms}, journal = {Environmental Science and Technology}, volume = {48}, number = {3}, pages = {1851-1858}, ISSN = {0013936X (ISSN)}, DOI = {10.1021/es403582f}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84893624362&doi=10.1021%2fes403582f&partnerID=40&md5=f149c0a2588d339fe026b07494ff0d03}, year = {2014}, type = {Journal Article} } - N. Karuna, L. Zhang, J. H. Walton, M. Couturier, M. H. Oztop, E. R. Master, M. J. McCarthy, and T. Jeoh, “The impact of alkali pretreatment and post-pretreatment conditioning on the surface properties of rice straw affecting cellulose accessibility to cellulases,” Bioresource technology, vol. 167, pp. 232-240, 2014.
[Bibtex]@article{RN341_2014, author = {Karuna, N. and Zhang, L. and Walton, J. H. and Couturier, M. and Oztop, M. H. and Master, E. R. and McCarthy, M. J. and Jeoh, T.}, title = {The impact of alkali pretreatment and post-pretreatment conditioning on the surface properties of rice straw affecting cellulose accessibility to cellulases}, journal = {Bioresource Technology}, volume = {167}, pages = {232-240}, ISSN = {09608524 (ISSN)}, DOI = {10.1016/j.biortech.2014.05.122}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84903484247&doi=10.1016%2fj.biortech.2014.05.122&partnerID=40&md5=751bf845ccdf6dbec4ad75d70cc057f2}, year = {2014}, type = {Journal Article} } - M. S. Kim, S. M. Pinto, D. Getnet, R. S. Nirujogi, S. S. Manda, R. Chaerkady, A. K. Madugundu, D. S. Kelkar, R. Isserlin, S. Jain, J. K. Thomas, B. Muthusamy, P. Leal-Rojas, P. Kumar, N. A. Sahasrabuddhe, L. Balakrishnan, J. Advani, B. George, S. Renuse, L. D. Selvan, A. H. Patil, V. Nanjappa, A. Radhakrishnan, S. Prasad, T. Subbannayya, R. Raju, M. Kumar, S. K. Sreenivasamurthy, A. Marimuthu, G. J. Sathe, S. Chavan, K. K. Datta, Y. Subbannayya, A. Sahu, S. D. Yelamanchi, S. Jayaram, P. Rajagopalan, J. Sharma, K. R. Murthy, N. Syed, R. Goel, A. A. Khan, S. Ahmad, G. Dey, K. Mudgal, A. Chatterjee, T. C. Huang, J. Zhong, X. Wu, P. G. Shaw, D. Freed, M. S. Zahari, K. K. Mukherjee, S. Shankar, A. Mahadevan, H. Lam, C. J. Mitchell, S. K. Shankar, P. Satishchandra, J. T. Schroeder, R. Sirdeshmukh, A. Maitra, S. D. Leach, C. G. Drake, M. K. Halushka, T. S. Prasad, R. H. Hruban, C. L. Kerr, G. D. Bader, C. A. Iacobuzio-Donahue, H. Gowda, and A. Pandey, “A draft map of the human proteome,” Nature, vol. 509, iss. 7502, pp. 575-81, 2014.
[Bibtex]@article{RN1078_2014, author = {Kim, M. S. and Pinto, S. M. and Getnet, D. and Nirujogi, R. S. and Manda, S. S. and Chaerkady, R. and Madugundu, A. K. and Kelkar, D. S. and Isserlin, R. and Jain, S. and Thomas, J. K. and Muthusamy, B. and Leal-Rojas, P. and Kumar, P. and Sahasrabuddhe, N. A. and Balakrishnan, L. and Advani, J. and George, B. and Renuse, S. and Selvan, L. D. and Patil, A. H. and Nanjappa, V. and Radhakrishnan, A. and Prasad, S. and Subbannayya, T. and Raju, R. and Kumar, M. and Sreenivasamurthy, S. K. and Marimuthu, A. and Sathe, G. J. and Chavan, S. and Datta, K. K. and Subbannayya, Y. and Sahu, A. and Yelamanchi, S. D. and Jayaram, S. and Rajagopalan, P. and Sharma, J. and Murthy, K. R. and Syed, N. and Goel, R. and Khan, A. A. and Ahmad, S. and Dey, G. and Mudgal, K. and Chatterjee, A. and Huang, T. C. and Zhong, J. and Wu, X. and Shaw, P. G. and Freed, D. and Zahari, M. S. and Mukherjee, K. K. and Shankar, S. and Mahadevan, A. and Lam, H. and Mitchell, C. J. and Shankar, S. K. and Satishchandra, P. and Schroeder, J. T. and Sirdeshmukh, R. and Maitra, A. and Leach, S. D. and Drake, C. G. and Halushka, M. K. and Prasad, T. S. and Hruban, R. H. and Kerr, C. L. and Bader, G. D. and Iacobuzio-Donahue, C. A. and Gowda, H. and Pandey, A.}, title = {A draft map of the human proteome}, journal = {Nature}, volume = {509}, number = {7502}, pages = {575-81}, ISSN = {1476-4687 (Electronic) 0028-0836 (Linking)}, DOI = {10.1038/nature13302}, url = {http://www.ncbi.nlm.nih.gov/pubmed/24870542}, year = {2014}, type = {Journal Article} } - M. Latha Gandla, M. Derba-Maceluch, X. Liu, L. Gerber, E. R. Master, E. J. Mellerowicz, and L. J. Jönsson, “Expression of a fungal glucuronoyl esterase in populus: effects on wood properties and saccharification efficiency,” Phytochemistry, vol. 112, pp. 210-220, 2014.
[Bibtex]@article{RN337_2014, author = {Latha Gandla, M. and Derba-Maceluch, M. and Liu, X. and Gerber, L. and Master, E. R. and Mellerowicz, E. J. and Jönsson, L. J.}, title = {Expression of a fungal glucuronoyl esterase in Populus: Effects on wood properties and saccharification efficiency}, journal = {Phytochemistry}, volume = {112}, pages = {210-220}, ISSN = {00319422 (ISSN)}, DOI = {10.1016/j.phytochem.2014.06.002}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84903420130&doi=10.1016%2fj.phytochem.2014.06.002&partnerID=40&md5=04c961a00da01a092948bf22689c3611}, year = {2014}, type = {Journal Article} } - S. Lemak, B. Nocek, N. Beloglazova, T. Skarina, R. Flick, G. Brown, A. Joachimiak, A. Savchenko, and A. F. Yakunin, “The crispr-associated cas4 protein pcal 0546 from pyrobaculum calidifontis contains a [2fe-2s] cluster: crystal structure and nuclease activity,” Nucleic acids research, vol. 42, iss. 17, pp. 11144-11155, 2014.
[Bibtex]@article{RN793_2014, author = {Lemak, S. and Nocek, B. and Beloglazova, N. and Skarina, T. and Flick, R. and Brown, G. and Joachimiak, A. and Savchenko, A. and Yakunin, A. F.}, title = {The CRISPR-associated Cas4 protein Pcal 0546 from Pyrobaculum calidifontis contains a [2Fe-2S] cluster: Crystal structure and nuclease activity}, journal = {Nucleic Acids Research}, volume = {42}, number = {17}, pages = {11144-11155}, ISSN = {03051048 (ISSN)}, DOI = {10.1093/nar/gku797}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84945540442&doi=10.1093%2fnar%2fgku797&partnerID=40&md5=f673db4e56f8bba22584c2b78326fb01}, year = {2014}, type = {Journal Article} } - C. Londono, M. J. Loureiro, B. Slater, P. B. Lücker, J. Soleas, S. Sathananthan, J. S. Aitchison, A. J. Kabla, and A. P. McGuigan, “Nonautonomous contact guidance signaling during collective cell migration,” Proceedings of the national academy of sciences of the united states of america, vol. 111, iss. 5, pp. 1807-1812, 2014.
[Bibtex]@article{RN490_2014, author = {Londono, C. and Loureiro, M. J. and Slater, B. and Lücker, P. B. and Soleas, J. and Sathananthan, S. and Aitchison, J. S. and Kabla, A. J. and McGuigan, A. P.}, title = {Nonautonomous contact guidance signaling during collective cell migration}, journal = {Proceedings of the National Academy of Sciences of the United States of America}, volume = {111}, number = {5}, pages = {1807-1812}, ISSN = {00278424 (ISSN)}, DOI = {10.1073/pnas.1321852111}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84893447129&doi=10.1073%2fpnas.1321852111&partnerID=40&md5=b6b358aca715d154b312fbe3dee66e94}, year = {2014}, type = {Journal Article} } - M. Loza-Correa, T. Sahr, M. Rolando, C. Daniels, P. Petit, T. Skarina, L. Gomez Valero, D. Dervins-Ravault, N. Honoré, A. Savchenko, and C. Buchrieser, “The legionella pneumophila kai operon is implicated in stress response and confers fitness in competitive environments,” Environmental microbiology, vol. 16, iss. 2, pp. 359-381, 2014.
[Bibtex]@article{RN918_2014, author = {Loza-Correa, M. and Sahr, T. and Rolando, M. and Daniels, C. and Petit, P. and Skarina, T. and Gomez Valero, L. and Dervins-Ravault, D. and Honoré, N. and Savchenko, A. and Buchrieser, C.}, title = {The Legionella pneumophila kai operon is implicated in stress response and confers fitness in competitive environments}, journal = {Environmental Microbiology}, volume = {16}, number = {2}, pages = {359-381}, ISSN = {14622912 (ISSN)}, DOI = {10.1111/1462-2920.12223}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84892958675&doi=10.1111%2f1462-2920.12223&partnerID=40&md5=7ed647c71583fa8c69fcc5c822e3ad75}, year = {2014}, type = {Journal Article} } - P. B. Lücker, S. Javaherian, J. P. Soleas, D. Halverson, P. W. Zandstra, and A. P. McGuigan, “A microgroove patterned multiwell cell culture plate for high-throughput studies of cell alignment,” Biotechnology and bioengineering, vol. 111, iss. 12, pp. 2537-2548, 2014.
[Bibtex]@article{RN487_2014, author = {Lücker, P. B. and Javaherian, S. and Soleas, J. P. and Halverson, D. and Zandstra, P. W. and McGuigan, A. P.}, title = {A microgroove patterned multiwell cell culture plate for high-throughput studies of cell alignment}, journal = {Biotechnology and Bioengineering}, volume = {111}, number = {12}, pages = {2537-2548}, ISSN = {00063592 (ISSN)}, DOI = {10.1002/bit.25298}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84918789587&doi=10.1002%2fbit.25298&partnerID=40&md5=ea88e363933e1f59cd709a3444ac5cfd}, year = {2014}, type = {Journal Article} } - F. Luo, R. Gitiafroz, C. E. Devine, Y. Gong, L. A. Hug, L. Raskin, and E. A. Edwards, “Metatranscriptome of an anaerobic benzene-degrading, nitrate-reducing enrichment culture reveals involvement of carboxylation in benzene ring activation,” Applied and environmental microbiology, vol. 80, iss. 14, pp. 4095-4107, 2014.
[Bibtex]@article{RN213_2014, author = {Luo, F. and Gitiafroz, R. and Devine, C. E. and Gong, Y. and Hug, L. A. and Raskin, L. and Edwards, E. A.}, title = {Metatranscriptome of an anaerobic benzene-degrading, nitrate-reducing enrichment culture reveals involvement of carboxylation in benzene ring activation}, journal = {Applied and Environmental Microbiology}, volume = {80}, number = {14}, pages = {4095-4107}, ISSN = {00992240 (ISSN)}, DOI = {10.1128/AEM.00717-14}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84903134555&doi=10.1128%2fAEM.00717-14&partnerID=40&md5=d0ea02d53abb77523a58283d5618e5c9}, year = {2014}, type = {Journal Article} } - T. Meyer and E. A. Edwards, “Anaerobic digestion of pulp and paper mill wastewater and sludge,” Water research, vol. 65, pp. 321-349, 2014.
[Bibtex]@article{RN208_2014, author = {Meyer, T. and Edwards, E. A.}, title = {Anaerobic digestion of pulp and paper mill wastewater and sludge}, journal = {Water Research}, volume = {65}, pages = {321-349}, ISSN = {00431354 (ISSN)}, DOI = {10.1016/j.watres.2014.07.022}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84906270487&doi=10.1016%2fj.watres.2014.07.022&partnerID=40&md5=5f49473c7398f53c005c91ea3ba884ba}, year = {2014}, type = {Journal Article} } - D. Meziane-Cherif, P. J. Stogios, E. Evdokimova, A. Savchenko, and P. Courvalin, “Structural basis for the evolution of vancomycin resistance d,d-peptidases,” Proceedings of the national academy of sciences of the united states of america, vol. 111, iss. 16, pp. 5872-5877, 2014.
[Bibtex]@article{RN916_2014, author = {Meziane-Cherif, D. and Stogios, P. J. and Evdokimova, E. and Savchenko, A. and Courvalin, P.}, title = {Structural basis for the evolution of vancomycin resistance D,D-peptidases}, journal = {Proceedings of the National Academy of Sciences of the United States of America}, volume = {111}, number = {16}, pages = {5872-5877}, ISSN = {00278424 (ISSN)}, DOI = {10.1073/pnas.1402259111}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84899110665&doi=10.1073%2fpnas.1402259111&partnerID=40&md5=4e8091660ee4fbe2b6e17f07542c00d2}, year = {2014}, type = {Journal Article} } - A. C. Paz, J. Soleas, J. C. H. Poon, D. Trieu, T. K. Waddell, and A. P. McGuigan, “Challenges and opportunities for tissue-engineering polarized epithelium,” Tissue engineering – part b: reviews, vol. 20, iss. 1, pp. 56-72, 2014.
[Bibtex]@article{RN491_2014, author = {Paz, A. C. and Soleas, J. and Poon, J. C. H. and Trieu, D. and Waddell, T. K. and McGuigan, A. P.}, title = {Challenges and opportunities for tissue-engineering polarized epithelium}, journal = {Tissue Engineering - Part B: Reviews}, volume = {20}, number = {1}, pages = {56-72}, ISSN = {19373368 (ISSN)}, DOI = {10.1089/ten.teb.2013.0144}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84893557502&doi=10.1089%2ften.teb.2013.0144&partnerID=40&md5=b6f3d0b4940c98989b6b5b90abbfad26}, year = {2014}, type = {Journal Article} } - A. Pérez-De-Mora, A. Zila, M. L. McMaster, and E. A. Edwards, “Bioremediation of chlorinated ethenes in fractured bedrock and associated changes in dechlorinating and nondechlorinating microbial populations,” Environmental science and technology, vol. 48, iss. 10, pp. 5770-5779, 2014.
[Bibtex]@article{RN210_2014, author = {Pérez-De-Mora, A. and Zila, A. and McMaster, M. L. and Edwards, E. A.}, title = {Bioremediation of chlorinated ethenes in fractured bedrock and associated changes in dechlorinating and nondechlorinating microbial populations}, journal = {Environmental Science and Technology}, volume = {48}, number = {10}, pages = {5770-5779}, ISSN = {0013936X (ISSN)}, DOI = {10.1021/es404122y}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84901020322&doi=10.1021%2fes404122y&partnerID=40&md5=dc76e3d6301420d14cba1472a6073af3}, year = {2014}, type = {Journal Article} } - M. Pourbafrani, J. McKechnie, T. Shen, B. A. Saville, and H. L. Maclean, “Impacts of pre-treatment technologies and co-products on greenhouse gas emissions and energy use of lignocellulosic ethanol production,” Journal of cleaner production, vol. 78, pp. 104-111, 2014.
[Bibtex]@article{RN641_2014, author = {Pourbafrani, M. and McKechnie, J. and Shen, T. and Saville, B. A. and Maclean, H. L.}, title = {Impacts of pre-treatment technologies and co-products on greenhouse gas emissions and energy use of lignocellulosic ethanol production}, journal = {Journal of Cleaner Production}, volume = {78}, pages = {104-111}, ISSN = {09596526 (ISSN)}, DOI = {10.1016/j.jclepro.2014.04.050}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84904249098&doi=10.1016%2fj.jclepro.2014.04.050&partnerID=40&md5=c60ad9367fb553747b5ea47358a33b2d}, year = {2014}, type = {Journal Article} } - N. Prapakornwiriya and L. L. Diosady, “Recovery of sinapic acid from the waste effluent of mustard protein isolation by ion exchange chromatography,” Jaocs, journal of the american oil chemists’ society, vol. 91, iss. 2, pp. 357-362, 2014.
[Bibtex]@article{RN684_2014, author = {Prapakornwiriya, N. and Diosady, L. L.}, title = {Recovery of sinapic acid from the waste effluent of mustard protein isolation by ion exchange chromatography}, journal = {JAOCS, Journal of the American Oil Chemists' Society}, volume = {91}, number = {2}, pages = {357-362}, ISSN = {0003021X (ISSN)}, DOI = {10.1007/s11746-013-2366-1}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84893874895&doi=10.1007%2fs11746-013-2366-1&partnerID=40&md5=db0bafb959cd6ecfce3a1f261ba622e0}, year = {2014}, type = {Journal Article} } - P. J. Schnurr, G. S. Espie, and D. G. Allen, “The effect of light direction and suspended cell concentrations on algal biofilm growth rates,” Applied microbiology and biotechnology, vol. 98, iss. 20, pp. 8553-8562, 2014.
[Bibtex]@article{RN526_2014, author = {Schnurr, P. J. and Espie, G. S. and Allen, D. G.}, title = {The effect of light direction and suspended cell concentrations on algal biofilm growth rates}, journal = {Applied Microbiology and Biotechnology}, volume = {98}, number = {20}, pages = {8553-8562}, ISSN = {01757598 (ISSN)}, DOI = {10.1007/s00253-014-5964-4}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84919913856&doi=10.1007%2fs00253-014-5964-4&partnerID=40&md5=4663d3ed4533c329b4ac868ead4875a0}, year = {2014}, type = {Journal Article} } - S. Sinichi and L. L. Diosady, “Isopropyl alcohol extraction of de-hulled tellow mustard flour,” Jaocs, journal of the american oil chemists’ society, vol. 91, iss. 12, pp. 2143-2153, 2014.
[Bibtex]@article{RN683_2014, author = {Sinichi, S. and Diosady, L. L.}, title = {Isopropyl alcohol extraction of de-hulled tellow mustard flour}, journal = {JAOCS, Journal of the American Oil Chemists' Society}, volume = {91}, number = {12}, pages = {2143-2153}, ISSN = {0003021X (ISSN)}, DOI = {10.1007/s11746-014-2556-5}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84925488764&doi=10.1007%2fs11746-014-2556-5&partnerID=40&md5=9be08b7b6f4161bab357c1a9b281a320}, year = {2014}, type = {Journal Article} } - P. J. Stogios, M. L. Kuhn, E. Evdokimova, P. Courvalin, W. F. Anderson, and A. Savchenko, “Potential for reduction of streptogramin a resistance revealed by structural analysis of acetyltransferase vata,” Antimicrobial agents and chemotherapy, vol. 58, iss. 12, pp. 7083-7092, 2014.
[Bibtex]@article{RN912_2014, author = {Stogios, P. J. and Kuhn, M. L. and Evdokimova, E. and Courvalin, P. and Anderson, W. F. and Savchenko, A.}, title = {Potential for reduction of streptogramin a resistance revealed by structural analysis of acetyltransferase VatA}, journal = {Antimicrobial Agents and Chemotherapy}, volume = {58}, number = {12}, pages = {7083-7092}, ISSN = {00664804 (ISSN)}, DOI = {10.1128/AAC.03743-14}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84912535991&doi=10.1128%2fAAC.03743-14&partnerID=40&md5=908d25f847104d80af3263acf98554df}, year = {2014}, type = {Journal Article} } - H. Suzuki, T. V. Vuong, Y. Gong, K. Chan, C. Y. Ho, E. R. Master, and A. Kondo, “Sequence diversity and gene expression analyses of expansin-related proteins in the white-rot basidiomycete, phanerochaete carnosa,” Fungal genetics and biology, vol. 72, pp. 115-123, 2014.
[Bibtex]@article{RN336_2014, author = {Suzuki, H. and Vuong, T. V. and Gong, Y. and Chan, K. and Ho, C. Y. and Master, E. R. and Kondo, A.}, title = {Sequence diversity and gene expression analyses of expansin-related proteins in the white-rot basidiomycete, Phanerochaete carnosa}, journal = {Fungal Genetics and Biology}, volume = {72}, pages = {115-123}, ISSN = {10871845 (ISSN)}, DOI = {10.1016/j.fgb.2014.05.008}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84908502901&doi=10.1016%2fj.fgb.2014.05.008&partnerID=40&md5=6aa518cbff54549bb47c68183b805f18}, year = {2014}, type = {Journal Article} } - S. Tabtabaei, D. G. B. Boocock, and L. L. Diosady, “Biodiesel feedstock from emulsions produced by aqueous processing of yellow mustard,” Jaocs, journal of the american oil chemists’ society, vol. 91, iss. 7, pp. 1269-1282, 2014.
[Bibtex]@article{RN685_2014, author = {Tabtabaei, S. and Boocock, D. G. B. and Diosady, L. L.}, title = {Biodiesel feedstock from emulsions produced by aqueous processing of yellow mustard}, journal = {JAOCS, Journal of the American Oil Chemists' Society}, volume = {91}, number = {7}, pages = {1269-1282}, ISSN = {0003021X (ISSN)}, DOI = {10.1007/s11746-014-2448-8}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84903760584&doi=10.1007%2fs11746-014-2448-8&partnerID=40&md5=af5045008ac89d2951dea8e53ad973aa}, year = {2014}, type = {Journal Article} } - D. Trieu, T. K. Waddell, and A. P. McGuigan, “A microfluidic device to apply shear stresses to polarizing ciliated airway epithelium using air flow,” Biomicrofluidics, vol. 8, iss. 6, 2014.
[Bibtex]@article{RN488_2014, author = {Trieu, D. and Waddell, T. K. and McGuigan, A. P.}, title = {A microfluidic device to apply shear stresses to polarizing ciliated airway epithelium using air flow}, journal = {Biomicrofluidics}, volume = {8}, number = {6}, ISSN = {19321058 (ISSN)}, DOI = {10.1063/1.4901930}, year = {2014}, type = {Journal Article} } - T. V. Vuong and E. R. Master, “Fusion of a xylan-binding module to gluco- oligosaccharide oxidase increases activity and promotes stable immobilization,” Plos one, vol. 9, iss. 4, 2014.
[Bibtex]@article{RN338_2014, author = {Vuong, T. V. and Master, E. R.}, title = {Fusion of a xylan-binding module to gluco- oligosaccharide oxidase increases activity and promotes stable immobilization}, journal = {PLoS ONE}, volume = {9}, number = {4}, ISSN = {19326203 (ISSN)}, DOI = {10.1371/journal.pone.0095170 103109/104092382014889651}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84899671121&doi=10.1371%2fjournal.pone.0095170&partnerID=40&md5=4d5156ccf8b517ebf14e7042deb02f2c}, year = {2014}, type = {Journal Article} } - W. Wang, G. Mai-Gisondi, P. J. Stogios, A. Kaur, X. Xu, H. Cui, O. Turunen, A. Savchenko, and E. R. Master, “Elucidation of the molecular basis for arabinoxylan-debranching activity of a thermostable family gh62 α-l-arabinofuranosidase from streptomyces thermoviolaceus,” Applied and environmental microbiology, vol. 80, iss. 17, pp. 5317-5329, 2014.
[Bibtex]@article{RN342_2014, author = {Wang, W. and Mai-Gisondi, G. and Stogios, P. J. and Kaur, A. and Xu, X. and Cui, H. and Turunen, O. and Savchenko, A. and Master, E. R.}, title = {Elucidation of the molecular basis for arabinoxylan-debranching activity of a thermostable family GH62 α-L-arabinofuranosidase from Streptomyces thermoviolaceus}, journal = {Applied and Environmental Microbiology}, volume = {80}, number = {17}, pages = {5317-5329}, ISSN = {00992240 (ISSN)}, DOI = {10.1128/AEM.00685-14}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84905923793&doi=10.1128%2fAEM.00685-14&partnerID=40&md5=b70306542a1b029affb2ebc062eeb57e}, year = {2014}, type = {Journal Article} }
2013
- M. Alcaide, J. Tornés, P. J. Stogios, X. Xu, C. Gertler, R. D. I. Leo, R. Bargiela, A. Lafraya, M. E. Guazzaroni, N. López-Cortés, T. N. Chernikova, O. V. Golyshina, T. Y. Nechitaylo, I. Plumeier, D. H. Pieper, M. M. Yakimov, A. Savchenko, P. N. Golyshin, and M. Ferrer, “Single residues dictate the co-evolution of dual esterases: mcp hydrolases from the α/β hydrolase family,” Biochemical journal, vol. 454, iss. 1, pp. 157-166, 2013.
[Bibtex]@article{RN927_2013, author = {Alcaide, M. and Tornés, J. and Stogios, P. J. and Xu, X. and Gertler, C. and Leo, R. D. I. and Bargiela, R. and Lafraya, A. and Guazzaroni, M. E. and López-Cortés, N. and Chernikova, T. N. and Golyshina, O. V. and Nechitaylo, T. Y. and Plumeier, I. and Pieper, D. H. and Yakimov, M. M. and Savchenko, A. and Golyshin, P. N. and Ferrer, M.}, title = {Single residues dictate the co-evolution of dual esterases: MCP hydrolases from the α/β hydrolase family}, journal = {Biochemical Journal}, volume = {454}, number = {1}, pages = {157-166}, ISSN = {02646021 (ISSN)}, DOI = {10.1042/BJ20130552}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84880858205&doi=10.1042%2fBJ20130552&partnerID=40&md5=56a787715315c477b77437b824d5f3e5}, year = {2013}, type = {Journal Article} } - N. Anesiadis, H. Kobayashi, W. R. Cluett, and R. Mahadevan, “Analysis and design of a genetic circuit for dynamic metabolic engineering,” Acs synthetic biology, vol. 2, iss. 8, pp. 442-452, 2013.
[Bibtex]@article{RN403_2013, author = {Anesiadis, N. and Kobayashi, H. and Cluett, W. R. and Mahadevan, R.}, title = {Analysis and design of a genetic circuit for dynamic metabolic engineering}, journal = {ACS Synthetic Biology}, volume = {2}, number = {8}, pages = {442-452}, ISSN = {21615063 (ISSN)}, DOI = {10.1021/sb300129j}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84882603873&doi=10.1021%2fsb300129j&partnerID=40&md5=468c2b11d469b0001506841ca4d00b89}, year = {2013}, type = {Journal Article} } - B. P. Anton, Y. C. Chang, P. Brown, H. P. Choi, L. L. Faller, J. Guleria, Z. Hu, N. Klitgord, A. Levy-Moonshine, A. Maksad, V. Mazumdar, M. McGettrick, L. Osmani, R. Pokrzywa, J. Rachlin, R. Swaminathan, B. Allen, G. Housman, C. Monahan, K. Rochussen, K. Tao, A. S. Bhagwat, S. E. Brenner, L. Columbus, V. de Crécy-Lagard, D. Ferguson, A. Fomenkov, G. Gadda, R. D. Morgan, A. L. Osterman, D. A. Rodionov, I. A. Rodionova, K. E. Rudd, D. Söll, J. Spain, S. y Xu, A. Bateman, R. M. Blumenthal, J. M. Bollinger, W. S. Chang, M. Ferrer, I. Friedberg, M. Y. Galperin, J. Gobeill, D. Haft, J. Hunt, P. Karp, W. Klimke, C. Krebs, D. Macelis, R. Madupu, M. J. Martin, J. H. Miller, C. O’Donovan, B. Palsson, P. Ruch, A. Setterdahl, G. Sutton, J. Tate, A. Yakunin, D. Tchigvintsev, G. Plata, J. Hu, R. Greiner, D. Horn, K. Sjölander, S. L. Salzberg, D. Vitkup, S. Letovsky, D. Segrè, C. DeLisi, R. J. Roberts, M. Steffen, and S. Kasif, “The combrex project: design, methodology, and initial results,” Plos biology, vol. 11, iss. 8, 2013.
[Bibtex]@article{RN799_2013, author = {Anton, B. P. and Chang, Y. C. and Brown, P. and Choi, H. P. and Faller, L. L. and Guleria, J. and Hu, Z. and Klitgord, N. and Levy-Moonshine, A. and Maksad, A. and Mazumdar, V. and McGettrick, M. and Osmani, L. and Pokrzywa, R. and Rachlin, J. and Swaminathan, R. and Allen, B. and Housman, G. and Monahan, C. and Rochussen, K. and Tao, K. and Bhagwat, A. S. and Brenner, S. E. and Columbus, L. and de Crécy-Lagard, V. and Ferguson, D. and Fomenkov, A. and Gadda, G. and Morgan, R. D. and Osterman, A. L. and Rodionov, D. A. and Rodionova, I. A. and Rudd, K. E. and Söll, D. and Spain, J. and Xu, S. y and Bateman, A. and Blumenthal, R. M. and Bollinger, J. M. and Chang, W. S. and Ferrer, M. and Friedberg, I. and Galperin, M. Y. and Gobeill, J. and Haft, D. and Hunt, J. and Karp, P. and Klimke, W. and Krebs, C. and Macelis, D. and Madupu, R. and Martin, M. J. and Miller, J. H. and O'Donovan, C. and Palsson, B. and Ruch, P. and Setterdahl, A. and Sutton, G. and Tate, J. and Yakunin, A. and Tchigvintsev, D. and Plata, G. and Hu, J. and Greiner, R. and Horn, D. and Sjölander, K. and Salzberg, S. L. and Vitkup, D. and Letovsky, S. and Segrè, D. and DeLisi, C. and Roberts, R. J. and Steffen, M. and Kasif, S.}, title = {The COMBREX Project: Design, Methodology, and Initial Results}, journal = {PLoS Biology}, volume = {11}, number = {8}, ISSN = {15449173 (ISSN)}, DOI = {10.1371/journal.pbio.1001638 10.1371/journal.pbio.0020042; Roberts, R.J., Chang, Y.C., Hu, Z., Rachlin, J.N., Anton, B.P., COMBREX: a project to accelerate the functional annotation of prokaryotic genomes (2011) Nucleic Acids Res, 39, pp. D11-D14; Cohn, D., Atlas, L., Ladner, R., Improving generalization with active learning (1994) Machine Learning, 15, pp. 201-221; Xu, S.Y., Nugent, R.L., Kasamkattil, J., Fomenkov, A., Gupta, Y., Characterization of type II and III restriction-modification systems from Bacillus cereus strains ATCC 10987 and ATCC 14579 (2012) J Bacteriol, 194, pp. 49-60; Clark, T.A., Murray, I.A., Morgan, R.D., Kislyuk, A.O., Spittle, K.E., Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing (2012) Nucleic Acids Res, 40, pp. e29; 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(2003) Structure, 11, pp. 7-9; Lapierre, P., Gogarten, J.P., Estimating the size of the bacterial pan-genome (2009) Trends Genet, 25, pp. 107-110}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84883152491&doi=10.1371%2fjournal.pbio.1001638&partnerID=40&md5=d2ed734e43d408813498f381ed173dbf}, year = {2013}, type = {Journal Article} } - Y. Azimi, X. Chen, D. G. Allen, V. Pileggi, P. Seto, I. G. Droppo, and R. R. Farnood, “Uv disinfection of wastewater flocs: the effect of secondary treatment conditions,” Water science and technology, vol. 67, iss. 12, pp. 2719-2723, 2013.
[Bibtex]@article{RN599_2013, author = {Azimi, Y. and Chen, X. and Allen, D. G. and Pileggi, V. and Seto, P. and Droppo, I. G. and Farnood, R. R.}, title = {UV disinfection of wastewater flocs: The effect of secondary treatment conditions}, journal = {Water Science and Technology}, volume = {67}, number = {12}, pages = {2719-2723}, ISSN = {02731223 (ISSN)}, DOI = {10.2166/wst.2013.148}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84880004058&doi=10.2166%2fwst.2013.148&partnerID=40&md5=16895f286a734d30664b1f993b1e0171}, year = {2013}, type = {Journal Article} } - N. Beloglazova, R. Flick, A. Tchigvintsev, G. Brown, A. Popovic, B. Nocek, and A. F. Yakunin, “Nuclease activity of the human samhd1 protein implicated in the aicardi-goutières syndrome and hiv-1 restriction,” Journal of biological chemistry, vol. 288, iss. 12, pp. 8101-8110, 2013.
[Bibtex]@article{RN802_2013, author = {Beloglazova, N. and Flick, R. and Tchigvintsev, A. and Brown, G. and Popovic, A. and Nocek, B. and Yakunin, A. F.}, title = {Nuclease activity of the human SAMHD1 protein implicated in the aicardi-goutières syndrome and HIV-1 restriction}, journal = {Journal of Biological Chemistry}, volume = {288}, number = {12}, pages = {8101-8110}, ISSN = {00219258 (ISSN)}, DOI = {10.1074/jbc.M112.431148}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84874959500&doi=10.1074%2fjbc.M112.431148&partnerID=40&md5=ba30dd363abf7d9b1a3b8e99b533873e}, year = {2013}, type = {Journal Article} } - M. J. Domagalski, K. L. Tkaczuk, M. Chruszcz, T. Skarina, O. Onopriyenko, M. Cymborowski, M. Grabowski, A. Savchenko, and W. Minor, “Structure of isochorismate synthase dhbc from bacillus anthracis,” Acta crystallographica section f: structural biology and crystallization communications, vol. 69, iss. 9, pp. 956-961, 2013.
[Bibtex]@article{RN926_2013, author = {Domagalski, M. J. and Tkaczuk, K. L. and Chruszcz, M. and Skarina, T. and Onopriyenko, O. and Cymborowski, M. and Grabowski, M. and Savchenko, A. and Minor, W.}, title = {Structure of isochorismate synthase DhbC from Bacillus anthracis}, journal = {Acta Crystallographica Section F: Structural Biology and Crystallization Communications}, volume = {69}, number = {9}, pages = {956-961}, ISSN = {17443091 (ISSN)}, DOI = {10.1107/S1744309113021246}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84883423921&doi=10.1107%2fS1744309113021246&partnerID=40&md5=aee3e67832182e071ecde40ad34f20fe}, year = {2013}, type = {Journal Article} } - A. Dumitrache, G. Wolfaardt, G. Allen, S. N. Liss, and L. R. Lynd, “Form and function of clostridium thermocellum biofilms,” Applied and environmental microbiology, vol. 79, iss. 1, pp. 231-239, 2013.
[Bibtex]@article{RN627_2013, author = {Dumitrache, A. and Wolfaardt, G. and Allen, G. and Liss, S. N. and Lynd, L. R.}, title = {Form and function of Clostridium thermocellum biofilms}, journal = {Applied and Environmental Microbiology}, volume = {79}, number = {1}, pages = {231-239}, ISSN = {00992240 (ISSN)}, DOI = {10.1128/AEM.02563-12}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84871906709&doi=10.1128%2fAEM.02563-12&partnerID=40&md5=2028fbe03b04703ab2ba4b3fc1d08ad9}, year = {2013}, type = {Journal Article} } - A. Dumitrache, G. M. Wolfaardt, D. G. Allen, S. N. Liss, and L. R. Lynd, “Tracking the cellulolytic activity of clostridium thermocellum biofilms,” Biotechnology for biofuels, vol. 6, iss. 1, 2013.
[Bibtex]@article{RN528_2013, author = {Dumitrache, A. and Wolfaardt, G. M. and Allen, D. G. and Liss, S. N. and Lynd, L. R.}, title = {Tracking the cellulolytic activity of Clostridium thermocellum biofilms}, journal = {Biotechnology for Biofuels}, volume = {6}, number = {1}, ISSN = {17546834 (ISSN)}, DOI = {10.1186/1754-6834-6-175}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84888253787&doi=10.1186%2f1754-6834-6-175&partnerID=40&md5=03d16352787fc5b48453f90d609afcf3}, year = {2013}, type = {Journal Article} } - K. Engel, D. Ashby, S. F. Brady, D. A. Cowan, J. Doemer, E. A. Edwards, K. Fiebig, E. C. Martens, D. McCormac, D. A. Mead, K. Miyazaki, G. Moreno-Hagelsieb, F. O’Gara, A. Reid, D. R. Rose, P. Simonet, S. Sjöling, K. Smalla, W. R. Streit, J. Tedman-Jones, S. Valla, E. M. H. Wellington, C. C. Wu, M. R. Liles, J. D. Neufeld, A. Sessitsch, and T. C. Charles, “Meeting report: 1st international functional metagenomics workshop, may 7-8, 2012, st. jacobs, ontario, canada,” Standards in genomic sciences, vol. 8, iss. 1, pp. 106-111, 2013.
[Bibtex]@article{RN214_2013, author = {Engel, K. and Ashby, D. and Brady, S. F. and Cowan, D. A. and Doemer, J. and Edwards, E. A. and Fiebig, K. and Martens, E. C. and McCormac, D. and Mead, D. A. and Miyazaki, K. and Moreno-Hagelsieb, G. and O'Gara, F. and Reid, A. and Rose, D. R. and Simonet, P. and Sjöling, S. and Smalla, K. and Streit, W. R. and Tedman-Jones, J. and Valla, S. and Wellington, E. M. H. and Wu, C. C. and Liles, M. R. and Neufeld, J. D. and Sessitsch, A. and Charles, T. C.}, title = {Meeting Report: 1st International Functional Metagenomics Workshop, May 7-8, 2012, St. Jacobs, Ontario, Canada}, journal = {Standards in Genomic Sciences}, volume = {8}, number = {1}, pages = {106-111}, ISSN = {19443277 (ISSN)}, DOI = {10.4056/sigs.3406845}, year = {2013}, type = {Journal Article} } - P. Gawand, P. Hyland, A. Ekins, V. J. J. Martin, and R. Mahadevan, “Novel approach to engineer strains for simultaneous sugar utilization,” Metabolic engineering, vol. 20, pp. 63-72, 2013.
[Bibtex]@article{RN411_2013, author = {Gawand, P. and Hyland, P. and Ekins, A. and Martin, V. J. J. and Mahadevan, R.}, title = {Novel approach to engineer strains for simultaneous sugar utilization}, journal = {Metabolic Engineering}, volume = {20}, pages = {63-72}, ISSN = {10967176 (ISSN)}, DOI = {10.1016/j.ymben.2013.08.003}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84884962157&doi=10.1016%2fj.ymben.2013.08.003&partnerID=40&md5=8d150b08f24e6515048720de2934b2e7}, year = {2013}, type = {Journal Article} } - R. E. Goacher, A. Y. L. Tsai, and E. R. Master, “Towards practical time-of-flight secondary ion mass spectrometry lignocellulolytic enzyme assays,” Biotechnology for biofuels, vol. 6, iss. 1, 2013.
[Bibtex]@article{RN345_2013, author = {Goacher, R. E. and Tsai, A. Y. L. and Master, E. R.}, title = {Towards practical time-of-flight secondary ion mass spectrometry lignocellulolytic enzyme assays}, journal = {Biotechnology for Biofuels}, volume = {6}, number = {1}, ISSN = {17546834 (ISSN)}, DOI = {10.1186/1754-6834-6-132}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84884327883&doi=10.1186%2f1754-6834-6-132&partnerID=40&md5=6447a51793d6643a6e91ce073bb38aa4}, year = {2013}, type = {Journal Article} } - P. D. Gosling, B. N. Bridgens, A. Albrecht, H. Alpermann, A. Angeleri, M. Barnes, N. Bartle, R. Canobbio, F. Dieringer, S. Gellin, W. J. Lewis, N. Mageau, R. Mahadevan, J. M. Marion, P. Marsden, E. Milligan, Y. P. Phang, K. Sahlin, B. Stimpfle, O. Suire, and J. Uhlemann, “Analysis and design of membrane structures: results of a round robin exercise,” Engineering structures, vol. 48, pp. 313-328, 2013.
[Bibtex]@article{RN407_2013, author = {Gosling, P. D. and Bridgens, B. N. and Albrecht, A. and Alpermann, H. and Angeleri, A. and Barnes, M. and Bartle, N. and Canobbio, R. and Dieringer, F. and Gellin, S. and Lewis, W. J. and Mageau, N. and Mahadevan, R. and Marion, J. M. and Marsden, P. and Milligan, E. and Phang, Y. P. and Sahlin, K. and Stimpfle, B. and Suire, O. and Uhlemann, J.}, title = {Analysis and design of membrane structures: Results of a round robin exercise}, journal = {Engineering Structures}, volume = {48}, pages = {313-328}, ISSN = {01410296 (ISSN)}, DOI = {10.1016/j.engstruct.2012.10.008}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84869879516&doi=10.1016%2fj.engstruct.2012.10.008&partnerID=40&md5=6c7765b637111c60396702c204d56d72}, year = {2013}, type = {Journal Article} } - Y. Hong, A. S. Nizami, M. Pour Bafrani, B. A. Saville, and H. L. Maclean, “Impact of cellulase production on environmental and financial metrics for lignocellulosic ethanol,” Biofuels, bioproducts and biorefining, vol. 7, iss. 3, pp. 303-313, 2013.
[Bibtex]@article{RN643_2013, author = {Hong, Y. and Nizami, A. S. and Pour Bafrani, M. and Saville, B. A. and Maclean, H. L.}, title = {Impact of cellulase production on environmental and financial metrics for lignocellulosic ethanol}, journal = {Biofuels, Bioproducts and Biorefining}, volume = {7}, number = {3}, pages = {303-313}, ISSN = {1932104X (ISSN)}, DOI = {10.1002/bbb.1393}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84877657298&doi=10.1002%2fbbb.1393&partnerID=40&md5=a7fe604aa64d858daa55556acc00fd27}, year = {2013}, type = {Journal Article} } - L. A. Hug and E. A. Edwards, “Diversity of reductive dehalogenase genes from environmental samples and enrichment cultures identified with degenerate primer pcr screens,” Frontiers in microbiology, vol. 4, iss. 1, 2013.
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[Bibtex]@article{RN217_2013, author = {Hug, L. A. and Maphosa, F. and Leys, D. and Löffler, F. E. and Smidt, H. and Edwards, E. A. and Adrian, L.}, title = {Overview of organohalide-respiring bacteria and a proposal for a classification system for reductive dehalogenases}, journal = {Philosophical transactions of the Royal Society of London. Series B, Biological sciences}, volume = {368}, number = {1616}, pages = {20120322}, ISSN = {14712970 (ISSN)}, DOI = {10.1098/rstb.2012.0322}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84881297512&doi=10.1098%2frstb.2012.0322&partnerID=40&md5=d1e81b3d9d26170c49c3b86108ff7521}, year = {2013}, type = {Journal Article} } - P. B. Hyland, S. L. S. Mun, and R. Mahadevan, “Prediction of weak acid toxicity in saccharomyces cerevisiae using genome-scale metabolic models,” Industrial biotechnology, vol. 9, iss. 4, pp. 229-235, 2013.
[Bibtex]@article{RN404_2013, author = {Hyland, P. B. and Mun, S. L. S. and Mahadevan, R.}, title = {Prediction of weak acid toxicity in Saccharomyces cerevisiae using genome-scale metabolic models}, journal = {Industrial Biotechnology}, volume = {9}, number = {4}, pages = {229-235}, ISSN = {15509087 (ISSN)}, DOI = {10.1089/ind.2013.0004}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84881494538&doi=10.1089%2find.2013.0004&partnerID=40&md5=dbccdb1b7ac701063369147765265ba9}, year = {2013}, type = {Journal Article} } - S. Javaherian, N. Anesiadis, R. Mahadevan, and A. P. McGuigan, “Design principles for generating robust gene expression patterns in dynamic engineered tissues,” Integrative biology : quantitative biosciences from nano to macro, vol. 5, iss. 3, pp. 578-589, 2013.
[Bibtex]@article{RN495_2013, author = {Javaherian, S. and Anesiadis, N. and Mahadevan, R. and McGuigan, A. P.}, title = {Design principles for generating robust gene expression patterns in dynamic engineered tissues}, journal = {Integrative biology : quantitative biosciences from nano to macro}, volume = {5}, number = {3}, pages = {578-589}, ISSN = {17579694 (ISSN)}, DOI = {10.1039/c3ib20274g}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84874790549&doi=10.1039%2fc3ib20274g&partnerID=40&md5=ff965477fdbcde6a36ea06da93c0ed5e}, year = {2013}, type = {Journal Article} } - S. Javaherian, K. J. Li, and A. P. McGuigan, “A simple and rapid method for generating patterned co-cultures with stable interfaces,” Biotechniques, vol. 55, iss. 1, pp. 21-26, 2013.
[Bibtex]@article{RN494_2013, author = {Javaherian, S. and Li, K. J. and McGuigan, A. P.}, title = {A simple and rapid method for generating patterned co-cultures with stable interfaces}, journal = {BioTechniques}, volume = {55}, number = {1}, pages = {21-26}, ISSN = {07366205 (ISSN)}, DOI = {10.2144/000114051}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84880047902&doi=10.2144%2f000114051&partnerID=40&md5=1354b3db8621d68a6b2030f4df6cdaef}, year = {2013}, type = {Journal Article} } - M. Kube, T. N. Chernikova, Y. Al-Ramahi, A. Beloqui, N. Lopez-Cortez, M. E. Guazzaroni, H. J. Heipieper, S. Klages, O. R. Kotsyurbenko, I. Langer, T. Y. Nechitaylo, H. Lünsdorf, M. Fernández, S. Juárez, S. Ciordia, A. Singer, O. Kagan, O. Egorova, P. Alain Petit, P. Stogios, Y. Kim, A. Tchigvintsev, R. Flick, R. Denaro, M. Genovese, J. P. Albar, O. N. Reva, M. Martínez-Gomariz, H. Tran, M. Ferrer, A. Savchenko, A. F. Yakunin, M. M. Yakimov, O. V. Golyshina, R. Reinhardt, and P. N. Golyshin, “Genome sequence and functional genomic analysis of the oil-degrading bacterium oleispira antarctica,” Nature communications, vol. 4, p. 2156, 2013.
[Bibtex]@article{RN928_2013, author = {Kube, M. and Chernikova, T. N. and Al-Ramahi, Y. and Beloqui, A. and Lopez-Cortez, N. and Guazzaroni, M. E. and Heipieper, H. J. and Klages, S. and Kotsyurbenko, O. R. and Langer, I. and Nechitaylo, T. Y. and Lünsdorf, H. and Fernández, M. and Juárez, S. and Ciordia, S. and Singer, A. and Kagan, O. and Egorova, O. and Alain Petit, P. and Stogios, P. and Kim, Y. and Tchigvintsev, A. and Flick, R. and Denaro, R. and Genovese, M. and Albar, J. P. and Reva, O. N. and Martínez-Gomariz, M. and Tran, H. and Ferrer, M. and Savchenko, A. and Yakunin, A. F. and Yakimov, M. M. and Golyshina, O. V. and Reinhardt, R. and Golyshin, P. N.}, title = {Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica}, journal = {Nature Communications}, volume = {4}, pages = {2156}, ISSN = {20411723 (ISSN)}, DOI = {10.1038/ncomms3156}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84880845008&doi=10.1038%2fncomms3156&partnerID=40&md5=d9f02f78530c24f965cf45c0619b37eb}, year = {2013}, type = {Journal Article} } - S. Lemak, N. Beloglazova, B. Nocek, T. Skarina, R. Flick, G. Brown, A. Popovic, A. Joachimiak, A. Savchenko, and A. F. Yakunin, “Toroidal structure and dna cleavage by the crispr-associated [4fe-4s] cluster containing cas4 nuclease sso0001 from sulfolobus solfataricus,” Journal of the american chemical society, vol. 135, iss. 46, pp. 17476-17487, 2013.
[Bibtex]@article{RN796_2013, author = {Lemak, S. and Beloglazova, N. and Nocek, B. and Skarina, T. and Flick, R. and Brown, G. and Popovic, A. and Joachimiak, A. and Savchenko, A. and Yakunin, A. F.}, title = {Toroidal structure and DNA cleavage by the CRISPR-associated [4Fe-4S] cluster containing Cas4 nuclease SSO0001 from Sulfolobus solfataricus}, journal = {Journal of the American Chemical Society}, volume = {135}, number = {46}, pages = {17476-17487}, ISSN = {00027863 (ISSN)}, DOI = {10.1021/ja408729b}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84888318075&doi=10.1021%2fja408729b&partnerID=40&md5=0996e85e1f4a329603c3407f4bb9da77}, year = {2013}, type = {Journal Article} } - X. Liang, C. E. Devine, J. Nelson, B. Sherwood Lollar, S. Zinder, and E. A. Edwards, “Anaerobic conversion of chlorobenzene and benzene to ch4 and co2 in bioaugmented microcosms,” Environmental science and technology, vol. 47, iss. 5, pp. 2378-2385, 2013.
[Bibtex]@article{RN219_2013, author = {Liang, X. and Devine, C. E. and Nelson, J. and Sherwood Lollar, B. and Zinder, S. and Edwards, E. A.}, title = {Anaerobic conversion of chlorobenzene and benzene to CH4 and CO2 in bioaugmented microcosms}, journal = {Environmental Science and Technology}, volume = {47}, number = {5}, pages = {2378-2385}, ISSN = {0013936X (ISSN)}, DOI = {10.1021/es3043092}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84874609060&doi=10.1021%2fes3043092&partnerID=40&md5=6fe281b867c33cd04cad66fb55e99283}, year = {2013}, type = {Journal Article} } - M. Lienemann, J. A. Gandier, J. J. Joensuu, A. Iwanaga, Y. Takatsuji, T. Haruyama, E. Master, M. Tenkanen, and M. B. Lindera, “Structure-function relationships in hydrophobins: probing the role of charged side chains,” Applied and environmental microbiology, vol. 79, iss. 18, pp. 5533-5538, 2013.
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Acta, 1474, pp. 133- 146; Linder, M., Selber, K., Nakari-Setälä, T., Qiao, M., Kula, M.-R., Penttilä, M., The hydrophobins HFBI and HFBII from Trichoderma reesei showing efficient interactions with nonionic surfactants in aqueous two-phase systems (2001) Biomacromolecules, 2, pp. 511-517}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84884220390&doi=10.1128%2fAEM.01493-13&partnerID=40&md5=232e677ef4b3137b6c1d27055a006b91}, year = {2013}, type = {Journal Article} } - F. E. Löffler, J. Yan, K. M. Ritalahti, L. Adrian, E. A. Edwards, K. T. Konstantinidis, J. A. Müller, H. Fullerton, S. H. Zinder, and A. M. Spormann, “Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, dehalococcoidia classis nov., order dehalococcoidales ord. nov. and family dehalococcoidaceae fam. nov., within the phylum chloroflexi,” International journal of systematic and evolutionary microbiology, vol. 63, pp. 625-635, 2013.
[Bibtex]@article{RN220_2013, author = {Löffler, F. E. and Yan, J. and Ritalahti, K. M. and Adrian, L. and Edwards, E. A. and Konstantinidis, K. T. and Müller, J. A. and Fullerton, H. and Zinder, S. H. and Spormann, A. M.}, title = {Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi}, journal = {International Journal of Systematic and Evolutionary Microbiology}, volume = {63}, pages = {625-635}, ISSN = {14665026 (ISSN)}, DOI = {10.1099/ijs.0.034926-0}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84874041126&doi=10.1099%2fijs.0.034926-0&partnerID=40&md5=984681177484fa8ca1af04bbb2d16b03}, year = {2013}, type = {Journal Article} } - J. M. Luk, M. Pourbafrani, B. A. Saville, and H. L. Maclean, “Ethanol or bioelectricity? life cycle assessment of lignocellulosic bioenergy use in light-duty vehicles,” Environmental science and technology, vol. 47, iss. 18, pp. 10676-10684, 2013.
[Bibtex]@article{RN642_2013, author = {Luk, J. M. and Pourbafrani, M. and Saville, B. A. and Maclean, H. L.}, title = {Ethanol or bioelectricity? Life cycle assessment of lignocellulosic bioenergy use in light-duty vehicles}, journal = {Environmental Science and Technology}, volume = {47}, number = {18}, pages = {10676-10684}, ISSN = {0013936X (ISSN)}, DOI = {10.1021/es4006459}, year = {2013}, type = {Journal Article} } - M. Martínez-Martínez, M. Alcaide, A. Tchigvintsev, O. Reva, J. Polaina, R. Bargiela, M. E. Guazzaroni, Á. Chicote, A. Canet, F. Valero, E. R. Eguizabal, M. C. Guerrero, A. F. Yakunin, and M. Ferrer, “Biochemical diversity of carboxyl esterases and lipases from lake arreo (spain): a metagenomic approach,” Applied and environmental microbiology, vol. 79, iss. 12, pp. 3553-3562, 2013.
[Bibtex]@article{RN800_2013, author = {Martínez-Martínez, M. and Alcaide, M. and Tchigvintsev, A. and Reva, O. and Polaina, J. and Bargiela, R. and Guazzaroni, M. E. and Chicote, Á and Canet, A. and Valero, F. and Eguizabal, E. R. and Guerrero, M. C. and Yakunin, A. F. and Ferrer, M.}, title = {Biochemical diversity of carboxyl esterases and lipases from Lake Arreo (Spain): A metagenomic approach}, journal = {Applied and Environmental Microbiology}, volume = {79}, number = {12}, pages = {3553-3562}, ISSN = {00992240 (ISSN)}, DOI = {10.1128/AEM.00240-13}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84878605968&doi=10.1128%2fAEM.00240-13&partnerID=40&md5=282071e297ea7a2a9aa55139a28a53fd}, year = {2013}, type = {Journal Article} } - D. Mowla, H. N. Tran, and D. G. Allen, “A review of the properties of biosludge and its relevance to enhanced dewatering processes,” Biomass and bioenergy, vol. 58, pp. 365-378, 2013.
[Bibtex]@article{RN529_2013, author = {Mowla, D. and Tran, H. N. and Allen, D. G.}, title = {A review of the properties of biosludge and its relevance to enhanced dewatering processes}, journal = {Biomass and Bioenergy}, volume = {58}, pages = {365-378}, ISSN = {09619534 (ISSN)}, DOI = {10.1016/j.biombioe.2013.09.002}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84888848775&doi=10.1016%2fj.biombioe.2013.09.002&partnerID=40&md5=624b8ca8f6cb9b3df0ffd20a0a2cee7b}, year = {2013}, type = {Journal Article} } - A. S. Nizami, B. A. Saville, and H. L. Maclean, “Anaerobic digesters: perspectives and challenges,” in Bioenergy production by anaerobic digestion: using agricultural biomass and organic wastes, Taylor and francis, 2013, pp. 139-151.
[Bibtex]@incollection{RN644, author = {Nizami, A. S. and Saville, B. A. and Maclean, H. L.}, title = {Anaerobic digesters: Perspectives and challenges}, booktitle = {Bioenergy Production by Anaerobic Digestion: Using Agricultural Biomass and Organic Wastes}, publisher = {Taylor and Francis}, pages = {139-151}, ISBN = {9780203137697 (ISBN)}, DOI = {10.4324/9780203137697}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84918878881&doi=10.4324%2f9780203137697&partnerID=40&md5=8ab5c7ca13398581fdab54abdaeddeeb}, year = {2013}, type = {Book Section} } - M. Pourbafrani, J. McKechnie, H. L. Maclean, and B. A. Saville, “Life cycle greenhouse gas impacts of ethanol, biomethane and limonene production from citrus waste,” Environmental research letters, vol. 8, iss. 1, 2013.
[Bibtex]@article{RN645_2013, author = {Pourbafrani, M. and McKechnie, J. and Maclean, H. L. and Saville, B. A.}, title = {Life cycle greenhouse gas impacts of ethanol, biomethane and limonene production from citrus waste}, journal = {Environmental Research Letters}, volume = {8}, number = {1}, ISSN = {17489326 (ISSN)}, DOI = {10.1088/1748-9326/8/1/015007}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84876191146&doi=10.1088%2f1748-9326%2f8%2f1%2f015007&partnerID=40&md5=6b994a60131721507f69d407f444c52e}, year = {2013}, type = {Journal Article} } - F. Salimi and R. Mahadevan, “Characterizing metabolic interactions in a clostridial co-culture for consolidated bioprocessing,” Bmc biotechnology, vol. 13, 2013.
[Bibtex]@article{RN400_2013, author = {Salimi, F. and Mahadevan, R.}, title = {Characterizing metabolic interactions in a clostridial co-culture for consolidated bioprocessing}, journal = {BMC Biotechnology}, volume = {13}, ISSN = {14726750 (ISSN)}, DOI = {10.1186/1472-6750-13-95}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84886741528&doi=10.1186%2f1472-6750-13-95&partnerID=40&md5=4cdc6251fed0a379aab16b2292de2e0d}, year = {2013}, type = {Journal Article} } - P. J. Schnurr, G. S. Espie, and D. G. Allen, “Algae biofilm growth and the potential to stimulate lipid accumulation through nutrient starvation,” Bioresource technology, vol. 136, pp. 337-344, 2013.
[Bibtex]@article{RN531_2013, author = {Schnurr, P. J. and Espie, G. S. and Allen, D. G.}, title = {Algae biofilm growth and the potential to stimulate lipid accumulation through nutrient starvation}, journal = {Bioresource Technology}, volume = {136}, pages = {337-344}, ISSN = {09608524 (ISSN)}, DOI = {10.1016/j.biortech.2013.03.036}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84876327993&doi=10.1016%2fj.biortech.2013.03.036&partnerID=40&md5=793b4dd4e8e0f109add3a06bc38683b8}, year = {2013}, type = {Journal Article} } - M. Sherif, D. Waung, B. Korbeci, V. Mavisakalyan, R. Flick, G. Brown, M. Abou-Zaid, A. F. Yakunin, and E. R. Master, “Biochemical studies of the multicopper oxidase (small laccase) from streptomyces coelicolor using bioactive phytochemicals and site-directed mutagenesis,” Microbial biotechnology, vol. 6, iss. 5, pp. 588-597, 2013.
[Bibtex]@article{RN797_2013, author = {Sherif, M. and Waung, D. and Korbeci, B. and Mavisakalyan, V. and Flick, R. and Brown, G. and Abou-Zaid, M. and Yakunin, A. F. and Master, E. R.}, title = {Biochemical studies of the multicopper oxidase (small laccase) from Streptomyces coelicolor using bioactive phytochemicals and site-directed mutagenesis}, journal = {Microbial Biotechnology}, volume = {6}, number = {5}, pages = {588-597}, ISSN = {17517907 (ISSN)}, DOI = {10.1111/1751-7915.12068}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84882279061&doi=10.1111%2f1751-7915.12068&partnerID=40&md5=e9274d9c2f0a9f7061b6c73ab29e93fa}, year = {2013}, type = {Journal Article} } - A. U. Singer, S. Schulze, T. Skarina, X. Xu, H. Cui, L. Eschen-Lippold, M. Egler, T. Srikumar, B. Raught, J. Lee, D. Scheel, A. Savchenko, and U. Bonas, “A pathogen type iii effector with a novel e3 ubiquitin ligase architecture,” Plos pathogens, vol. 9, iss. 1, 2013.
[Bibtex]@article{RN931_2013, author = {Singer, A. U. and Schulze, S. and Skarina, T. and Xu, X. and Cui, H. and Eschen-Lippold, L. and Egler, M. and Srikumar, T. and Raught, B. and Lee, J. and Scheel, D. and Savchenko, A. and Bonas, U.}, title = {A pathogen type III effector with a novel E3 ubiquitin ligase architecture}, journal = {PLoS Pathogens}, volume = {9}, number = {1}, ISSN = {15537366 (ISSN)}, DOI = {10.1371/journal.ppat.1003121}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84875074459&doi=10.1371%2fjournal.ppat.1003121&partnerID=40&md5=82d819707ff313f69cbeca027a8e2adb}, year = {2013}, type = {Journal Article} } - B. Slater, C. Londono, and A. P. McGuigan, “An algorithm to quantify correlated collective cell migration behavior,” Biotechniques, vol. 54, iss. 2, pp. 87-92, 2013.
[Bibtex]@article{RN496_2013, author = {Slater, B. and Londono, C. and McGuigan, A. P.}, title = {An algorithm to quantify correlated collective cell migration behavior}, journal = {BioTechniques}, volume = {54}, number = {2}, pages = {87-92}, ISSN = {07366205 (ISSN)}, DOI = {10.2144/000113990}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84876485509&doi=10.2144%2f000113990&partnerID=40&md5=d684c9a02708b1fbca5ad5595d92e455}, year = {2013}, type = {Journal Article} } - P. J. Stogios, P. Spanogiannopoulos, E. Evdokimova, O. Egorova, T. Shakya, N. Todorovic, A. Capretta, G. D. Wright, and A. Savchenko, “Structure-guided optimization of protein kinase inhibitors reverses aminoglycoside antibiotic resistance,” Biochemical journal, vol. 454, iss. 2, pp. 191-200, 2013.
[Bibtex]@article{RN925_2013, author = {Stogios, P. J. and Spanogiannopoulos, P. and Evdokimova, E. and Egorova, O. and Shakya, T. and Todorovic, N. and Capretta, A. and Wright, G. D. and Savchenko, A.}, title = {Structure-guided optimization of protein kinase inhibitors reverses aminoglycoside antibiotic resistance}, journal = {Biochemical Journal}, volume = {454}, number = {2}, pages = {191-200}, ISSN = {02646021 (ISSN)}, DOI = {10.1042/BJ20130317}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84881537568&doi=10.1042%2fBJ20130317&partnerID=40&md5=6074984141948a4fd84d6593cf4d6ee8}, year = {2013}, type = {Journal Article} } - S. Tabtabaei, V. M. Ataya Pulido, and L. L. Diosady, “Destabilization of yellow mustard emulsion using organic solvents,” Jaocs, journal of the american oil chemists’ society, vol. 90, iss. 5, pp. 707-716, 2013.
[Bibtex]@article{RN687_2013, author = {Tabtabaei, S. and Ataya Pulido, V. M. and Diosady, L. L.}, title = {Destabilization of yellow mustard emulsion using organic solvents}, journal = {JAOCS, Journal of the American Oil Chemists' Society}, volume = {90}, number = {5}, pages = {707-716}, ISSN = {0003021X (ISSN)}, DOI = {10.1007/s11746-013-2202-7}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84880700657&doi=10.1007%2fs11746-013-2202-7&partnerID=40&md5=228eaf34b115818b0f616b97ac1a1b18}, year = {2013}, type = {Journal Article} } - S. Tabtabaei and L. L. Diosady, “Aqueous and enzymatic extraction processes for the production of food-grade proteins and industrial oil from dehulled yellow mustard flour,” Food research international, vol. 52, iss. 2, pp. 547-556, 2013.
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[Bibtex]@article{RN223_2013, author = {Tang, S. and Edwards, E. A.}, title = {Complete genome sequence of Bacteroidales strain CF from a chloroform-dechlorinating enrichment culture}, journal = {Genome Announcements}, volume = {1}, number = {6}, ISSN = {21698287 (ISSN)}, DOI = {10.1128/genomeA.01066-13}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84999750787&doi=10.1128%2fgenomeA.01066-13&partnerID=40&md5=07c5cdcc53c043824e3a599789013fc9}, year = {2013}, type = {Journal Article} } - S. Tang and E. A. Edwards, “Identification of dehalobacter reductive dehalogenases that catalyse dechlorination of chloroform, 1,1,1-trichloroethane and 1,1-dichloroethane,” Philosophical transactions of the royal society of london. series b, biological sciences, vol. 368, iss. 1616, p. 20120318, 2013.
[Bibtex]@article{RN215_2013, author = {Tang, S. and Edwards, E. A.}, title = {Identification of Dehalobacter reductive dehalogenases that catalyse dechlorination of chloroform, 1,1,1-trichloroethane and 1,1-dichloroethane}, journal = {Philosophical transactions of the Royal Society of London. Series B, Biological sciences}, volume = {368}, number = {1616}, pages = {20120318}, ISSN = {14712970 (ISSN)}, DOI = {10.1098/rstb.2012.0318}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84884185468&doi=10.1098%2frstb.2012.0318&partnerID=40&md5=0ccc33f473be5628eae7fa1c62b7bc59}, year = {2013}, type = {Journal Article} } - G. D. Tartakovsky, A. M. Tartakovsky, T. D. Scheibe, Y. Fang, R. Mahadevan, and D. R. Lovley, “Pore-scale simulation of microbial growth using a genome-scale metabolic model: implications for darcy-scale reactive transport,” Advances in water resources, vol. 59, pp. 256-270, 2013.
[Bibtex]@article{RN402_2013, author = {Tartakovsky, G. D. and Tartakovsky, A. M. and Scheibe, T. D. and Fang, Y. and Mahadevan, R. and Lovley, D. R.}, title = {Pore-scale simulation of microbial growth using a genome-scale metabolic model: Implications for Darcy-scale reactive transport}, journal = {Advances in Water Resources}, volume = {59}, pages = {256-270}, ISSN = {03091708 (ISSN)}, DOI = {10.1016/j.advwatres.2013.05.007}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84881525046&doi=10.1016%2fj.advwatres.2013.05.007&partnerID=40&md5=5a6f5bbfe1dfbaf12be58b4d0c154c2a}, year = {2013}, type = {Journal Article} } - A. Tchigvintsev, D. Tchigvintsev, R. Flick, A. Popovic, A. Dong, X. Xu, G. Brown, W. Lu, H. Wu, H. Cui, L. Dombrowski, J. C. Joo, N. Beloglazova, J. Min, A. Savchenko, A. A. Caudy, J. D. Rabinowitz, A. G. Murzin, and A. F. Yakunin, “Biochemical and structural studies of conserved maf proteins revealed nucleotide pyrophosphatases with a preference for modified nucleotides,” Chemistry and biology, vol. 20, iss. 11, pp. 1386-1398, 2013.
[Bibtex]@article{RN795_2013, author = {Tchigvintsev, A. and Tchigvintsev, D. and Flick, R. and Popovic, A. and Dong, A. and Xu, X. and Brown, G. and Lu, W. and Wu, H. and Cui, H. and Dombrowski, L. and Joo, J. C. and Beloglazova, N. and Min, J. and Savchenko, A. and Caudy, A. A. and Rabinowitz, J. D. and Murzin, A. G. and Yakunin, A. F.}, title = {Biochemical and structural studies of conserved Maf proteins revealed nucleotide pyrophosphatases with a preference for modified nucleotides}, journal = {Chemistry and Biology}, volume = {20}, number = {11}, pages = {1386-1398}, ISSN = {10745521 (ISSN)}, DOI = {10.1016/j.chembiol.2013.09.011}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84888296777&doi=10.1016%2fj.chembiol.2013.09.011&partnerID=40&md5=7240e157ed501e8f52825c2d0c0a4355}, year = {2013}, type = {Journal Article} } - K. L. Tkaczuk, A. I. Shumilin, M. Chruszcz, E. Evdokimova, A. Savchenko, and W. Minor, “Structural and functional insight into the universal stress protein family,” Evolutionary applications, vol. 6, iss. 3, pp. 434-449, 2013.
[Bibtex]@article{RN930_2013, author = {Tkaczuk, K. L. and Shumilin, A. I. and Chruszcz, M. and Evdokimova, E. and Savchenko, A. and Minor, W.}, title = {Structural and functional insight into the universal stress protein family}, journal = {Evolutionary Applications}, volume = {6}, number = {3}, pages = {434-449}, ISSN = {17524563 (ISSN)}, DOI = {10.1111/eva.12057}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84875676199&doi=10.1111%2feva.12057&partnerID=40&md5=86fe259905cbfb09558ef023092468cf}, year = {2013}, type = {Journal Article} } - T. V. Vuong, A. H. Vesterinen, M. Foumani, M. Juvonen, J. Seppälä, M. Tenkanen, and E. R. Master, “Xylo- and cello-oligosaccharide oxidation by gluco-oligosaccharide oxidase from sarocladium strictum and variants with reduced substrate inhibition,” Biotechnology for biofuels, vol. 6, iss. 1, 2013.
[Bibtex]@article{RN344_2013, author = {Vuong, T. V. and Vesterinen, A. H. and Foumani, M. and Juvonen, M. and Seppälä, J. and Tenkanen, M. and Master, E. R.}, title = {Xylo- and cello-oligosaccharide oxidation by gluco-oligosaccharide oxidase from Sarocladium strictum and variants with reduced substrate inhibition}, journal = {Biotechnology for Biofuels}, volume = {6}, number = {1}, ISSN = {17546834 (ISSN)}, DOI = {10.1186/1754-6834-6-148}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84885363941&doi=10.1186%2f1754-6834-6-148&partnerID=40&md5=0f9f8fc0597f4c93052fbc5fde007173}, year = {2013}, type = {Journal Article} } - Y. F. Xu, F. Létisse, F. Absalan, W. Lu, E. Kuznetsova, G. Brown, A. A. Caudy, A. F. Yakunin, J. R. Broach, and J. D. Rabinowitz, “Nucleotide degradation and ribose salvage in yeast,” Molecular systems biology, vol. 9, iss. 1, 2013.
[Bibtex]@article{RN803_2013, author = {Xu, Y. F. and Létisse, F. and Absalan, F. and Lu, W. and Kuznetsova, E. and Brown, G. and Caudy, A. A. and Yakunin, A. F. and Broach, J. R. and Rabinowitz, J. D.}, title = {Nucleotide degradation and ribose salvage in yeast}, journal = {Molecular Systems Biology}, volume = {9}, number = {1}, ISSN = {17444292 (ISSN)}, DOI = {10.1038/msb.2013.21}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84884188178&doi=10.1038%2fmsb.2013.21&partnerID=40&md5=b9a39d48fcd113065d399ac6f73c34ee}, year = {2013}, type = {Journal Article} } - J. Zhao, T. D. Scheibe, and R. Mahadevan, “Model-based analysis of mixed uranium(vi) reduction by biotic and abiotic pathways during in situ bioremediation,” Chemical geology, vol. 357, pp. 215-222, 2013.
[Bibtex]@article{RN401_2013, author = {Zhao, J. and Scheibe, T. D. and Mahadevan, R.}, title = {Model-based analysis of mixed uranium(VI) reduction by biotic and abiotic pathways during in situ bioremediation}, journal = {Chemical Geology}, volume = {357}, pages = {215-222}, ISSN = {00092541 (ISSN)}, DOI = {10.1016/j.chemgeo.2013.08.037}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84884722805&doi=10.1016%2fj.chemgeo.2013.08.037&partnerID=40&md5=caebac7d497f2468f2872c84e28fa19d}, year = {2013}, type = {Journal Article} } - H. Zheng, A. Beliavsky, A. Tchigvintsev, J. S. Brunzelle, G. Brown, R. Flick, E. Evdokimova, Z. Wawrzak, R. Mahadevan, W. F. Anderson, A. Savchenko, and A. F. Yakunin, “Structure and activity of the nad(p)+-dependent succinate semialdehyde dehydrogenase ynei from salmonella typhimurium,” Proteins: structure, function and bioinformatics, vol. 81, iss. 6, pp. 1031-1041, 2013.
[Bibtex]@article{RN405_2013, author = {Zheng, H. and Beliavsky, A. and Tchigvintsev, A. and Brunzelle, J. S. and Brown, G. and Flick, R. and Evdokimova, E. and Wawrzak, Z. and Mahadevan, R. and Anderson, W. F. and Savchenko, A. and Yakunin, A. F.}, title = {Structure and activity of the NAD(P)+-dependent succinate semialdehyde dehydrogenase YneI from Salmonella typhimurium}, journal = {Proteins: Structure, Function and Bioinformatics}, volume = {81}, number = {6}, pages = {1031-1041}, ISSN = {08873585 (ISSN)}, DOI = {10.1002/prot.24227}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84878154249&doi=10.1002%2fprot.24227&partnerID=40&md5=0e8b3ae3e95ee46d1b2932b184087ad2}, year = {2013}, type = {Journal Article} } - K. Zhuang, L. Yang, W. R. Cluett, and R. Mahadevan, “Dynamic strain scanning optimization: an efficient strain design strategy for balanced yield, titer, and productivity. dyssco strategy for strain design,” Bmc biotechnology, vol. 13, 2013.
[Bibtex]@article{RN408_2013, author = {Zhuang, K. and Yang, L. and Cluett, W. R. and Mahadevan, R.}, title = {Dynamic strain scanning optimization: An efficient strain design strategy for balanced yield, titer, and productivity. DySScO strategy for strain design}, journal = {BMC Biotechnology}, volume = {13}, ISSN = {14726750 (ISSN)}, DOI = {10.1186/1472-6750-13-8}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84873258066&doi=10.1186%2f1472-6750-13-8&partnerID=40&md5=7c404984f146e1ca3f64229e51772878}, year = {2013}, type = {Journal Article} }
2012
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J, 28, pp. 519-539; Zhao, J., Fang, Y., Scheibe, T.D., Lovley, D.R., Mahadevan, R., Modeling and sensitivity analysis of electron capacitance for geobacter sedimentary environment (2010) J. Contam. Hydrol, 112, pp. 30-44; Zhuang, K., Izallalen, M., Mouser, P., Richter, H., Risso, C., Mahadevan, R., Lovley, D.R., Genome-scale dynamic modeling of the competition between rhodoferax and geobacter in anoxic subsurface environments (2011) ISME J, 5, pp. 305-316; Zhuang, K., Ma, E., Mahadevan, R., (2012) The Design of Long-term Effective Uranium Bioremediation Strategy Using A Community Metabolic Model, , Biotechnol. Bioeng., submitted}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84865355487&doi=10.5194%2fbg-9-1033-2012&partnerID=40&md5=8722c51cb3d7ebc5c6068dcffdf5abef}, year = {2012}, type = {Journal Article} } - C. C. H. Chan, S. O. C. Mundle, T. Eckert, X. Liang, S. Tang, G. Lacrampe-Couloume, E. A. Edwards, and B. Sherwood Lollar, “Large carbon isotope fractionation during biodegradation of chloroform by dehalobacter cultures,” Environmental science and technology, vol. 46, iss. 18, pp. 10154-10160, 2012.
[Bibtex]@article{RN226_2012, author = {Chan, C. C. H. and Mundle, S. O. C. and Eckert, T. and Liang, X. and Tang, S. and Lacrampe-Couloume, G. and Edwards, E. A. and Sherwood Lollar, B.}, title = {Large carbon isotope fractionation during biodegradation of chloroform by Dehalobacter cultures}, journal = {Environmental Science and Technology}, volume = {46}, number = {18}, pages = {10154-10160}, ISSN = {0013936X (ISSN)}, DOI = {10.1021/es3010317}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84866425570&doi=10.1021%2fes3010317&partnerID=40&md5=57c2f747ca012a57b3f3889de9fc056e}, year = {2012}, type = {Journal Article} } - E. Edwards, “Bacteria for remediating groundwater,” Industrial bioprocessing, vol. 34, iss. 6, p. 6, 2012.
[Bibtex]@article{RN225_2012, author = {Edwards, E.}, title = {Bacteria for remediating groundwater}, journal = {Industrial Bioprocessing}, volume = {34}, number = {6}, pages = {6}, ISSN = {10567194 (ISSN)}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84891277699&partnerID=40&md5=2f102b5332c311d75225dcad83d4bc7f}, year = {2012}, type = {Journal Article} } - P. J. Facchini, J. Bohlmann, P. S. Covello, V. De Luca, R. Mahadevan, J. E. Page, D. K. Ro, C. W. Sensen, R. Storms, and V. J. J. Martin, “Synthetic biosystems for the production of high-value plant metabolites,” Trends in biotechnology, vol. 30, iss. 3, pp. 127-131, 2012.
[Bibtex]@article{RN417_2012, author = {Facchini, P. J. and Bohlmann, J. and Covello, P. S. and De Luca, V. and Mahadevan, R. and Page, J. E. and Ro, D. K. and Sensen, C. W. and Storms, R. and Martin, V. J. J.}, title = {Synthetic biosystems for the production of high-value plant metabolites}, journal = {Trends in Biotechnology}, volume = {30}, number = {3}, pages = {127-131}, ISSN = {01677799 (ISSN)}, DOI = {10.1016/j.tibtech.2011.10.001}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84858070612&doi=10.1016%2fj.tibtech.2011.10.001&partnerID=40&md5=4020a9ad4bf938b0943c73c64c8b2b32}, year = {2012}, type = {Journal Article} } - E. Fernandez-Fueyo, F. J. Ruiz-Dueñas, P. Ferreira, D. Floudas, D. S. Hibbett, P. Canessa, L. F. Larrondo, T. Y. James, D. Seelenfreund, S. Lobos, R. Polanco, M. Tello, Y. Honda, T. Watanabe, T. Watanabe, J. S. Ryu, C. P. Kubicek, M. Schmoll, J. Gaskell, K. E. Hammel, F. J. St John, A. Vanden Wymelenberg, G. Sabat, S. S. BonDurant, K. Syed, J. S. Yadav, H. Doddapaneni, V. Subramanian, J. L. Lavín, J. A. Oguiza, G. Perez, A. G. Pisabarro, L. Ramirez, F. Santoyo, E. Master, P. M. Coutinho, B. Henrissat, V. Lombard, J. K. Magnuson, U. Kües, C. Hori, K. Igarashi, M. Samejima, B. W. Held, K. W. Barry, K. M. LaButti, A. Lapidus, E. A. Lindquist, S. M. Lucas, R. Riley, A. A. Salamov, D. Hoffmeister, D. Schwenk, Y. Hadar, O. Yarden, R. P. De Vries, A. Wiebenga, J. Stenlid, D. Eastwood, I. V. Grigoriev, R. M. Berka, R. A. Blanchette, P. Kersten, A. T. Martinez, R. Vicuna, and D. Cullen, “Comparative genomics of ceriporiopsis subvermispora and phanerochaete chrysosporium provide insight into selective ligninolysis,” Proceedings of the national academy of sciences of the united states of america, vol. 109, iss. 21, p. 8352, 2012.
[Bibtex]@article{RN351_2012, author = {Fernandez-Fueyo, E. and Ruiz-Dueñas, F. J. and Ferreira, P. and Floudas, D. and Hibbett, D. S. and Canessa, P. and Larrondo, L. F. and James, T. Y. and Seelenfreund, D. and Lobos, S. and Polanco, R. and Tello, M. and Honda, Y. and Watanabe, T. and Watanabe, T. and Ryu, J. S. and Kubicek, C. P. and Schmoll, M. and Gaskell, J. and Hammel, K. E. and St John, F. J. and Vanden Wymelenberg, A. and Sabat, G. and BonDurant, S. S. and Syed, K. and Yadav, J. S. and Doddapaneni, H. and Subramanian, V. and Lavín, J. L. and Oguiza, J. A. and Perez, G. and Pisabarro, A. G. and Ramirez, L. and Santoyo, F. and Master, E. and Coutinho, P. M. and Henrissat, B. and Lombard, V. and Magnuson, J. K. and Kües, U. and Hori, C. and Igarashi, K. and Samejima, M. and Held, B. W. and Barry, K. W. and LaButti, K. M. and Lapidus, A. and Lindquist, E. A. and Lucas, S. M. and Riley, R. and Salamov, A. A. and Hoffmeister, D. and Schwenk, D. and Hadar, Y. and Yarden, O. and De Vries, R. P. and Wiebenga, A. and Stenlid, J. and Eastwood, D. and Grigoriev, I. V. and Berka, R. M. and Blanchette, R. A. and Kersten, P. and Martinez, A. T. and Vicuna, R. and Cullen, D.}, title = {Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis}, journal = {Proceedings of the National Academy of Sciences of the United States of America}, volume = {109}, number = {21}, pages = {8352}, ISSN = {00278424 (ISSN)}, DOI = {10.1073/pnas.1206295109}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84861419905&doi=10.1073%2fpnas.1206295109&partnerID=40&md5=5f77993e73b222157991e07efb8a8509}, year = {2012}, type = {Journal Article} } - E. Fernandez-Fueyo, F. J. Ruiz-Dueñas, P. Ferreira, D. Floudas, D. S. Hibbett, P. Canessa, L. F. Larrondo, T. Y. James, D. Seelenfreund, S. Lobos, R. Polanco, M. Tello, Y. Honda, T. Watanabe, T. Watanabe, R. J. San, C. P. Kubicek, M. Schmoll, J. Gaskell, K. E. Hammel, F. J. St John, A. V. Wymelenberg, G. Sabat, S. S. BonDurant, K. Syed, J. S. Yadav, H. Doddapaneni, V. Subramanian, J. L. Laviń, J. A. Oguiza, G. Perez, A. G. Pisabarro, L. Ramirez, F. Santoyo, E. Master, P. M. Coutinho, B. Henrissat, V. Lombard, J. K. Magnuson, U. Kuës, C. Hori, K. Igarashi, M. Samejima, B. W. Held, K. W. Barry, K. M. LaButti, A. Lapidus, E. A. Lindquist, S. M. Lucas, R. Riley, A. A. Salamov, D. Hoffmeister, D. Schwenk, Y. Hadar, O. Yarden, R. P. De Vries, A. Wiebenga, J. Stenlid, D. Eastwood, I. V. Grigoriev, R. M. Berka, R. A. Blanchette, P. Kersten, A. T. Martinez, R. Vicuna, and D. Cullen, “Comparative genomics of ceriporiopsis subvermispora and phanerochaete chrysosporium provide insight into selective ligninolysis,” Proceedings of the national academy of sciences of the united states of america, vol. 109, iss. 14, pp. 5458-5463, 2012.
[Bibtex]@article{RN353_2012, author = {Fernandez-Fueyo, E. and Ruiz-Dueñas, F. J. and Ferreira, P. and Floudas, D. and Hibbett, D. S. and Canessa, P. and Larrondo, L. F. and James, T. Y. and Seelenfreund, D. and Lobos, S. and Polanco, R. and Tello, M. and Honda, Y. and Watanabe, T. and Watanabe, T. and San, R. J. and Kubicek, C. P. and Schmoll, M. and Gaskell, J. and Hammel, K. E. and St John, F. J. and Wymelenberg, A. V. and Sabat, G. and BonDurant, S. S. and Syed, K. and Yadav, J. S. and Doddapaneni, H. and Subramanian, V. and Laviń, J. L. and Oguiza, J. A. and Perez, G. and Pisabarro, A. G. and Ramirez, L. and Santoyo, F. and Master, E. and Coutinho, P. M. and Henrissat, B. and Lombard, V. and Magnuson, J. K. and Kuës, U. and Hori, C. and Igarashi, K. and Samejima, M. and Held, B. W. and Barry, K. W. and LaButti, K. M. and Lapidus, A. and Lindquist, E. A. and Lucas, S. M. and Riley, R. and Salamov, A. A. and Hoffmeister, D. and Schwenk, D. and Hadar, Y. and Yarden, O. and De Vries, R. P. and Wiebenga, A. and Stenlid, J. and Eastwood, D. and Grigoriev, I. V. and Berka, R. M. and Blanchette, R. A. and Kersten, P. and Martinez, A. T. and Vicuna, R. and Cullen, D.}, title = {Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis}, journal = {Proceedings of the National Academy of Sciences of the United States of America}, volume = {109}, number = {14}, pages = {5458-5463}, ISSN = {00278424 (ISSN)}, DOI = {10.1073/pnas.1119912109}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84859466995&doi=10.1073%2fpnas.1119912109&partnerID=40&md5=df2b2c468cff2e588de011977385ddcc}, year = {2012}, type = {Journal Article} } - F. Y. García-Becerra, E. J. Acosta, and D. G. Allen, “Wood adhesives based on alkaline extracts from wastewater biosolids and mustard protein,” Jaocs, journal of the american oil chemists’ society, vol. 89, iss. 7, pp. 1315-1323, 2012.
[Bibtex]@article{RN533_2012, author = {García-Becerra, F. Y. and Acosta, E. J. and Allen, D. G.}, title = {Wood adhesives based on alkaline extracts from wastewater biosolids and mustard protein}, journal = {JAOCS, Journal of the American Oil Chemists' Society}, volume = {89}, number = {7}, pages = {1315-1323}, ISSN = {0003021X (ISSN)}, DOI = {10.1007/s11746-012-2024-z}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84863777763&doi=10.1007%2fs11746-012-2024-z&partnerID=40&md5=6d8c760fce4ba85dc99201ebcd192b90}, year = {2012}, type = {Journal Article} } - R. E. Goacher, E. A. Edwards, A. F. Yakunin, C. A. Mims, and E. R. Master, “Application of time-of-flight-secondary ion mass spectrometry for the detection of enzyme activity on solid wood substrates,” Analytical chemistry, vol. 84, iss. 10, pp. 4443-4451, 2012.
[Bibtex]@article{RN230_2012, author = {Goacher, R. E. and Edwards, E. A. and Yakunin, A. F. and Mims, C. A. and Master, E. R.}, title = {Application of time-of-flight-secondary ion mass spectrometry for the detection of enzyme activity on solid wood substrates}, journal = {Analytical Chemistry}, volume = {84}, number = {10}, pages = {4443-4451}, ISSN = {00032700 (ISSN)}, DOI = {10.1021/ac3005346}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84861178860&doi=10.1021%2fac3005346&partnerID=40&md5=ff98894f8a44f641658b15ecf2d469a6}, year = {2012}, type = {Journal Article} } - C. F. Gonzalez, A. Tchigvintsev, G. Brown, R. Flick, E. Evdokimova, X. Xu, J. Osipiuk, M. E. Cuff, S. Lynch, A. Joachimiak, A. Savchenko, and A. F. Yakunin, “Structure and activity of the pseudomonas aeruginosa hotdog-fold thioesterases pa5202 and pa2801,” Biochemical journal, vol. 444, iss. 3, pp. 445-455, 2012.
[Bibtex]@article{RN805_2012, author = {Gonzalez, C. F. and Tchigvintsev, A. and Brown, G. and Flick, R. and Evdokimova, E. and Xu, X. and Osipiuk, J. and Cuff, M. E. and Lynch, S. and Joachimiak, A. and Savchenko, A. and Yakunin, A. F.}, title = {Structure and activity of the Pseudomonas aeruginosa hotdog-fold thioesterases PA5202 and PA2801}, journal = {Biochemical Journal}, volume = {444}, number = {3}, pages = {445-455}, ISSN = {02646021 (ISSN)}, DOI = {10.1042/BJ20112032}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84862239276&doi=10.1042%2fBJ20112032&partnerID=40&md5=d8e555c37dd2c881eeba86b5bad0c7bd}, year = {2012}, type = {Journal Article} } - A. M. Goral, K. L. Tkaczuk, M. Chruszcz, O. Kagan, A. Savchenko, and W. Minor, “Crystal structure of a putative isochorismatase hydrolase from oleispira antarctica,” Journal of structural and functional genomics, vol. 13, iss. 1, pp. 27-36, 2012.
[Bibtex]@article{RN937_2012, author = {Goral, A. M. and Tkaczuk, K. L. and Chruszcz, M. and Kagan, O. and Savchenko, A. and Minor, W.}, title = {Crystal structure of a putative isochorismatase hydrolase from Oleispira antarctica}, journal = {Journal of Structural and Functional Genomics}, volume = {13}, number = {1}, pages = {27-36}, ISSN = {1345711X (ISSN)}, DOI = {10.1007/s10969-012-9127-5}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84858709594&doi=10.1007%2fs10969-012-9127-5&partnerID=40&md5=a7415475e4dab5120380c4f30c77e026}, year = {2012}, type = {Journal Article} } - A. S. Halavaty, Y. Kim, G. Minasov, L. Shuvalova, I. Dubrovska, J. Winsor, M. Zhou, O. Onopriyenko, T. Skarina, L. Papazisi, K. Kwon, S. N. Peterson, A. Joachimiak, A. Savchenko, and W. F. Anderson, “Structural characterization and comparison of three acyl-carrier-protein synthases from pathogenic bacteria,” Acta crystallographica section d: biological crystallography, vol. 68, iss. 10, pp. 1359-1370, 2012.
[Bibtex]@article{RN932_2012, author = {Halavaty, A. S. and Kim, Y. and Minasov, G. and Shuvalova, L. and Dubrovska, I. and Winsor, J. and Zhou, M. and Onopriyenko, O. and Skarina, T. and Papazisi, L. and Kwon, K. and Peterson, S. N. and Joachimiak, A. and Savchenko, A. and Anderson, W. F.}, title = {Structural characterization and comparison of three acyl-carrier-protein synthases from pathogenic bacteria}, journal = {Acta Crystallographica Section D: Biological Crystallography}, volume = {68}, number = {10}, pages = {1359-1370}, ISSN = {09074449 (ISSN)}, DOI = {10.1107/S0907444912029101}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84866706479&doi=10.1107%2fS0907444912029101&partnerID=40&md5=1f51c45ea361b414f1508f7abf1c34ed}, year = {2012}, type = {Journal Article} } - J. Hou, K. Wojciechowska, H. Zheng, M. Chruszcz, D. R. Cooper, M. Cymborowski, T. Skarina, E. Gordon, H. Luo, A. Savchenko, and W. Minor, “Structure of a short-chain dehydrogenase/reductase from bacillus anthracis,” Acta crystallographica section f: structural biology and crystallization communications, vol. 68, iss. 6, pp. 632-637, 2012.
[Bibtex]@article{RN936_2012, author = {Hou, J. and Wojciechowska, K. and Zheng, H. and Chruszcz, M. and Cooper, D. R. and Cymborowski, M. and Skarina, T. and Gordon, E. and Luo, H. and Savchenko, A. and Minor, W.}, title = {Structure of a short-chain dehydrogenase/reductase from Bacillus anthracis}, journal = {Acta Crystallographica Section F: Structural Biology and Crystallization Communications}, volume = {68}, number = {6}, pages = {632-637}, ISSN = {17443091 (ISSN)}, DOI = {10.1107/S1744309112017939}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84862239275&doi=10.1107%2fS1744309112017939&partnerID=40&md5=1520480b604fc48e6363c6f7ac2dce4d}, year = {2012}, type = {Journal Article} } - L. A. Hug, R. G. Beiko, A. R. Rowe, R. E. Richardson, and E. A. Edwards, “Comparative metagenomics of three dehalococcoides-containing enrichment cultures: the role of the non-dechlorinating community,” Bmc genomics, vol. 13, iss. 1, 2012.
[Bibtex]@article{RN228_2012, author = {Hug, L. A. and Beiko, R. G. and Rowe, A. R. and Richardson, R. E. and Edwards, E. A.}, title = {Comparative metagenomics of three Dehalococcoides-containing enrichment cultures: The role of the non-dechlorinating community}, journal = {BMC Genomics}, volume = {13}, number = {1}, ISSN = {14712164 (ISSN)}, DOI = {10.1186/1471-2164-13-327}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84867609258&doi=10.1186%2f1471-2164-13-327&partnerID=40&md5=f2105844c80abd4fb1aadccd3843dd7f}, year = {2012}, type = {Journal Article} } - J. M. Jones, S. Ferguson, E. Edwards, T. Walton, N. McCurdy, and D. Howell, “Experiences of care delivery: endometrial cancer survivors at end of treatment,” Gynecologic oncology, vol. 124, iss. 3, pp. 458-464, 2012.
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[Bibtex]@article{RN689_2012, author = {Jung, Y. T. and Diosady, L. L.}, title = {Application of a ternary phase diagram to the phase separation of oil-in-water emulsions using isopropyl alcohol}, journal = {JAOCS, Journal of the American Oil Chemists' Society}, volume = {89}, number = {12}, pages = {2127-2134}, ISSN = {0003021X (ISSN)}, DOI = {10.1007/s11746-012-2127-6}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84870066635&doi=10.1007%2fs11746-012-2127-6&partnerID=40&md5=4ffc123d4487d68ecfc824eaa49ee59c}, year = {2012}, type = {Journal Article} } - T. Khazaei, A. McGuigan, and R. Mahadevan, “Ensemble modeling of cancer metabolism,” Frontiers in physiology, vol. 3 MAY, 2012.
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[Bibtex]@incollection{RN693, author = {Li, Y. O. and Diosady, L. L. and Bohac, L. and Wesley, A. S. and Mannar, M. G. V.}, title = {Double fortification of salt with iron and iodine as an effective tool in simultaneously alleviating two micronutrient deficiencies}, booktitle = {Micronutrients: Sources, Properties and Health Effects}, publisher = {Nova Science Publishers, Inc.}, pages = {95-116}, ISBN = {9781621008347 (ISBN)}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84895412217&partnerID=40&md5=3f89379d56b20b86b84c43629c6b7cf4}, year = {2012}, type = {Book Section} } - J. MacDonald and E. R. Master, “Time-dependent profiles of transcripts encoding lignocellulose-modifying enzymes of the white rot fungus phanerochaete carnosa grown on multiple wood substrates,” Applied and environmental microbiology, vol. 78, iss. 5, pp. 1596-1600, 2012.
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[Bibtex]@article{RN350_2012, author = {Mahajan, S. and Jeremic, D. and Goacher, R. E. and Master, E. R.}, title = {Mode of coniferous wood decay by the white rot fungus Phanerochaete carnosa as elucidated by FTIR and ToF-SIMS}, journal = {Applied Microbiology and Biotechnology}, volume = {94}, number = {5}, pages = {1303-1311}, ISSN = {01757598 (ISSN)}, DOI = {10.1007/s00253-011-3830-1}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84863851064&doi=10.1007%2fs00253-011-3830-1&partnerID=40&md5=eec2999b306fea74081a304e595f0091}, year = {2012}, type = {Journal Article} }